2024-11-15 19:31:29, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_048891360 4476 bp mRNA linear INV 18-MAY-2023 DEFINITION PREDICTED: Ostrea edulis metallo-beta-lactamase domain-containing protein 1-like (LOC125659624), transcript variant X2, mRNA. ACCESSION XM_048891360 VERSION XM_048891360.2 DBLINK BioProject: PRJNA970818 KEYWORDS RefSeq. SOURCE Ostrea edulis ORGANISM Ostrea edulis Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_079172) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 18, 2023 this sequence version replaced XM_048891360.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_947568905.1-RS_2023_05 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 05/10/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4476 /organism="Ostrea edulis" /mol_type="mRNA" /db_xref="taxon:37623" /chromosome="9" gene 1..4476 /gene="LOC125659624" /note="metallo-beta-lactamase domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85 long SRA reads, 5 Proteins" /db_xref="GeneID:125659624" CDS 147..845 /gene="LOC125659624" /codon_start=1 /product="metallo-beta-lactamase domain-containing protein 1-like" /protein_id="XP_048747317.1" /db_xref="GeneID:125659624" /translation="
MPYEVIVLKEGYSKAEGPGQQRACGSISLIKGPKNIIVDTGNPWDRDNILNGLKQNGLSPENIQYCVCTHGHSDHVGNLNLFCNAVHILSYDICIGDQYQMHDFKMGIPYEIDDDVEVVPTPGHTGTDISVIVSNTDLGTVAVTGDLFECLEDLEEPSLWQDNSENPEIQEQQRIEVLRKADYIVPGHGKMFKVPDEYKRSSMKVVMFREEVYEVGGQKTTLCEYVEIEDSQ"
misc_feature 156..725 /gene="LOC125659624" /note="uncharacterized human metallo-beta-lactamase domain-containing protein 1 and related proteins; MBL-fold metallo hydrolase domain; Region: MBLAC1-like_MBL-fold; cd07711" /db_xref="CDD:293797" misc_feature order(354..356,360..362,366..371,516..521,582..584, 708..710) /gene="LOC125659624" /note="active site" /db_xref="CDD:293797" polyA_site 4476 /gene="LOC125659624" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccccttatacccatacttatcagttagaataaacgaatacaatagacccgaatttaaatgatatataatacgaagtaatgttgcatgaatatactgtatttattgtttttggttgcaacccctttgagccttagcgtgacaacaccatgccctatgaagtaattgttttaaaagaaggctacagtaaagcagaaggcccaggtcaacaaagggcatgtggaagcattagtttgattaaagggcctaaaaacatcattgttgacactggaaacccttgggacagagacaacattctgaatggtcttaaacagaatggactttctccagaaaatatacaatattgtgtgtgtactcatggccattccgatcatgttggaaacctgaacctcttctgtaatgctgttcacattctgtcctatgatatatgtattggggatcaataccaaatgcacgatttcaaaatgggaattccttatgagatagatgatgatgtggaggtggttcccacccccggacacacaggtacggacatctccgttattgtcagcaacacggatctaggaactgtggcagtaacaggtgatttatttgaatgcttggaggacctcgaagagcccagtctttggcaggacaacagtgaaaatcctgaaattcaagaacagcaaaggatagaggttctacgcaaagctgactacatcgttcctggacatgggaaaatgttcaaggttcctgatgagtacaaaagatcgtccatgaaggtagtgatgtttcgtgaagaagtttacgaagttgggggccaaaaaaccactctctgtgaatatgtggagatcgaagacagccagtaattggacatttgatatggaagttaagatttctacatcctctgttgtttattacacattcctttatacaatagtactattatttagaatgtgatagtttcatcaatttttgtgggtatcaaattttgcagatttgtcaacaatatcatggaaagctaccctatgctttctttttgagcaaaagttgtacatgtgctttcaattgatgatctcttgatttcctgatctggtacatctatagatagattaccataggattataatattcctcttttacttatattccaatatttcaattgtgttatattacatccttaaacttacatttgtctgaatgtgtacacttgtctgaatgtgtacacatgtctgaatgtgtacacttgtctgaatgtacacatgtctgaatgtgtaattaaggaggtatgttacaccagagaaatttgatatggattaaaagtgcaggatatgtacatgtatatacaacaatattttgaaattgaaaactttcaaatttacagttcagcagtcaacatgctaacctactgagctattcagcttaggcaatgaatttagaaatgaattgacaaatattgctaatatttatattttcatccatgttttaaagggacatggacacaatttaagctgaaaattttaaaatttttatttttccatttttaatgtttagaatgcttaactaaggtacagtatttctaatggtcagcaaaaatttgaacgtcagttgtcgaggtacatgggagatacagagctcaaaattctgttatgcatgtaaacaaggctcgtgccatgtttttgtttacatagatgtaggttaaatatactagtaaaagtttcgtttaaagcaaattttttcaatttacaagtttattctgaacagaattgaatagtttctagtgtttggcatgcacttctcattttgttttaaacatgctattttctattaagcaatctatatgtaaacaaacacatggcacgagccttgtttacataacaaagaattgtgagtgctgtatctcacttataattcaacaactgcatgagtggcatagctaggtttgaaatatttgtaagcagggggtctggggggctgccgccccccaagaagccgaggacaattttcgtaatatgtaacaaaaatttaacgaaaatatttgtaagcacgtgcatccagtgctacagtgtagctacgccactgaactgatatattcaaattttgtttgaacattagattttttaaagaaaaaagatattctgaattattaaaacttttttgcattggaatttatagatcagctgtgttaattaaattggctatgtcccttataatgtgtactattcaaagacgaaaataatacaatggtttaattcaaaagtttcttgatccacatgcctgcatgaaattgtccaatgtctgcataaaaggaatgttgtctttattttttaaccattgcacgagtaacaaatttgattcattaggtgttttatagatacaactcttctttattacatatttaaatgcagagtttgaaaccaatgtgttgttgttatgagattcctcattttttagctcttctgagccaaaggctcaaagagcctaatgctatggccatttgtgcggtgtgcgtaaactttttagaaaaagggctataactcaagaaccccttggccaattttttttcaaatttgttacagggtatcattggcccaagggctttcatacatactaaatagagggatgtgaccctttaacaaggggagataatcaggaaaatacaaacaaaagtagtggttgctaaaaaatcttcttctcaagaaccacagggcagattatcaccaaacttacacataaggatgaggatatgttgtagattaaaaattgttcaaggcattaccctggggcaaagggcgtggtctcaaggtcacttcaaagttgacctaaattaaaaaaatttttaaattccttaaatcttagatattttagtcattataaggactaggatcatcaaattttgatagttgatgcatcttaggaccttgtgtcaagttgtctcaaaagtaggtcacggtgacctactttttgaattttgcaggtatttattttaaaattaattttgatgcatatcttggacactttgaagcctatgatcatcaaaacttgtcagttggtggatcatgggaccttgaaatgtgtcaactgaaaaataggtcaccgtgacctactttctgaattttatggcttatcatttatagatatattttaagttgttatttcaaatactgagaggtttagaatcatcaaatcttgtaagttgatgcatcttgaggccttgaaacatatttataaaaaagtaggtcacagtgacctattttttgaattttgcagatattcaaatttcacattttcaattttagatgcatattttgggcactgtaaaacctaggatcatcaaactttgtcagttgatgcgtcttcagtcttcggtttgtgtcgaccaaaaagtaggtcaccgtgacctacttatggtatttgacagctaaattactatatttcagacactatttgaactacaatcatcaaactttgtcagttgatgtatcttgagtctacggagtgtgtcgaccaaaaagtaggtcaccttgacctacttttgaaatttgacggctatatttatatatttcagatactatttgatctacagtcatcaaactttgtcagttgatgggtcttgcatgttcgaagggtttcgaccaaaaagtaggtcaacttgacctgcttttggaattggacacctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgcgtcttgcatgtccaaagggtgttgaccaaaaagtaggtcaccctgacctacttttggaattggacggctatatttatataattcagatactatttgacctacagtcatcaaactttgtcagttgttgggtcttacatgtttgaagggtgttgatgaaaaagtaggtcaccttgacctactttttgaatttgacggctatatttatatatttcagatactatttgacctacagtcatcaaactttgtcagttgatgggtcttgcatgttcggagttcgctgaccaaaaagtaggtcaccatgacctacgattggaatttgacagctatatttcaatattcagatactaattggcttaagatcattaaactttgtcagttgatatttcttgggttctcaaaatgtgtaaaccaaaaagtaggtcacattgacctactttttttgaattcttaggatttaactaaagatttagaatactaagaggctaagaatagaaatggtggggttgtacaatttatcagaagagcgattctaggcccttgggcctcttgttctgtatcacatgcacattttatgttgtatttcctggtatcactagttttttcttgctacacataccgggtgatgattggatgtgtttttgacttttgaaaatttaaccttctaattttgcacttttgttgcatgtcaaccaaggtgaaccatttttaacactgtgtatgtacattgtacaatgtatgtgtaataaatacaaactcagtaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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