2025-04-22 02:32:40, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_048427410 1580 bp mRNA linear ROD 28-MAY-2022 DEFINITION PREDICTED: Myodes glareolus alkaline ceramidase 1 (Acer1), transcript variant X1, mRNA. ACCESSION XM_048427410 VERSION XM_048427410.1 DBLINK BioProject: PRJNA842339 KEYWORDS RefSeq. SOURCE Myodes glareolus (Bank vole) ORGANISM Myodes glareolus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Myodes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025965346) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Myodes glareolus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1580 /organism="Myodes glareolus" /mol_type="mRNA" /db_xref="taxon:447135" /chromosome="Unknown" gene 1..1580 /gene="Acer1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:125395759" CDS 77..871 /gene="Acer1" /codon_start=1 /product="alkaline ceramidase 1 isoform X1" /protein_id="XP_048283367.1" /db_xref="GeneID:125395759" /translation="
MSSIFAYQSSEVDWCESNFQHSELVAEFYNTFSNVFFLIFGPIIMFLMHPYAQKRTWAIYGVSVLFMVIGLFSMYFHMTLSFLGQLLDEISILWLLASGYSVWMPRCYFPKFIKGNRYYFSCLVVMTTIISTFLTFVKPSINAYALNSIAIHILYIVYKEYNKTSNGDLRHLIEMSVILWAAALTSWISDRVLCSFWQRIHFSYMHSIWHVLISITFPYGIVTMALLDAKYEMPGQTLKVHYWPRDSWFIGLPYVEIQDNDKNC"
misc_feature 92..844 /gene="Acer1" /note="Region: Ceramidase; pfam05875" /db_xref="CDD:461766" ORIGIN
ggcactcgtaagctcactcactctgctggcgcgcctctgccaggcacaagtcgcgtgcactgattccagagcaaagatgtccagcatctttgcctatcagagctctgaggtggattggtgcgagagtaatttccagcactcggaactggtggctgagttctacaatacgttcagcaatgtgttcttcctcatctttggacctatcataatgttcctcatgcatccttacgcccagaaacggacctgggccatctatggcgtctcggtcctcttcatggttataggtttgttctccatgtatttccacatgacactcagctttttggggcagctgctggatgagatttccatcctgtggttgttggccagtggctacagcgtgtggatgccccgttgctacttcccgaagttcatcaaaggaaacaggtactacttcagctgccttgtagttatgaccactataatcagcaccttcttgacgtttgtgaagccctcgatcaatgcatatgcgctcaacagcatcgccatacacattctctacatagtgtacaaggagtacaataagaccagcaatggggaccttcggcatctgattgagatgtctgtgatcttatgggctgctgcgctgaccagctggataagcgaccgtgtgctttgcagtttctggcagcggattcacttctcctacatgcacagcatttggcatgtcctcataagcatcaccttcccttacggtatcgtgaccatggcccttttggatgcaaagtacgagatgccaggtcaaaccctcaaagtccactactggccccgggatagttggttcattgggctgccctatgtggagatccaggacaacgacaaaaactgctgagccttggtggattctccactctccgaccagccactcagatgtctgcgctctgaggatagaggaccaggacttcagttaggacgcttgtcacttctcctttccctcattcacactccttgtcctgctgtggccacaagatggactttcttgtggctcagagcactaatttggtgactgaggggcagggactgcctggtgtgctgcatgactggcctgtgtcctctttcagcctttggaaccgcagcttctccacagccattgatgcggtgatgggtgggtagggtaagtggttgatacagcacctgcttgaagcacgacgcttgttctctggcatctcacacatctggaactatttatgagtgttatagattcaatgtgggcatgaccgtgttctgggaaggtggggagtatccagaaaacattctaggctccaccgctaggtgcagagatatgtactctttgaaccattcacacccaggccatggaggcacacaagaaccatgggagagaacagagggccaacctgagtgacatcacggagcgggatgtgagaggggagcatggtggccattctaggcacttagaaggaaggctactgagcacaggtggtttccacggtgactaacagtacggaaatagacatgcctacatctgactttctgctccacagtattcagcctgcatagtcatgagggtgtggcctttccta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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