GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 16:52:19, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_047490051            8304 bp    mRNA    linear   INV 06-APR-2022
DEFINITION  PREDICTED: Vespa velutina mucin-19-like (LOC124947633), mRNA.
ACCESSION   XM_047490051
VERSION     XM_047490051.1
DBLINK      BioProject: PRJNA822380
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Vespa velutina
  ORGANISM  Vespa velutina
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Vespoidea; Vespidae; Vespinae; Vespa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_062190) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Vespa velutina Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..8304
                     /organism="Vespa velutina"
                     /mol_type="mRNA"
                     /db_xref="taxon:202808"
                     /chromosome="3"
     gene            1..8304
                     /gene="LOC124947633"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 112 Proteins, and 10% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:124947633"
     CDS             1..8304
                     /gene="LOC124947633"
                     /codon_start=1
                     /product="mucin-19-like"
                     /protein_id="XP_047346007.1"
                     /db_xref="GeneID:124947633"
                     /translation="
MKVSATSLLFIVVSTTALSIPAGNRQSQKIGSISNQINNIRPSQGINAEINANANGGLKTGANSNINAGNRQGQGIGSISSSKNNIRANQGINVNINANVKGGSKTGANFNTNAQIQAQSKGKSNIGANLGIHAGIGQQWNIPSNSKHSQHNNNNNYYNEYPYYFPRIIEFPRIPKLPNILYPFWSTKTTSTTTEKPCHDGSSMTSTTAQPTKASTSKPSPSTKSSSSAPTTQPHSNSSPAGSGAGIGGGVAGGISGSGSGSGINVQGGAAGGVGTGTGSGKGGIGVSIGVSIGVGGGGKWSSTSSPRTSTSEKPSKAPSSSASPSSENIPCEESSVAPSSSAHPSSTSSKKPSEAPSSSASPSPSSSEKPSESPSSSASPSSSSSGQPSEAPSSSASPSPSNTEQSSEAPSSSASPISESTPCEESSGAPSSSASPSSSSSEQPSEAPSSSASPSSSSTEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSPSSSEQSSEAPSSSASPISESTPCEESSVAPSSSASPSSSSSEQPSEAPSSSASPSSSSTEQPSEAPSSSASPSSSSYGQTSEAPSSSASPSSSSTEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSPSSSEQPSEPPSSSASPSSSSSGQPSESPSSSTSQSPSSSEQSSEAPSSSASPISESTPCEESSVAPSSSASPSSSSSGQPSEAPSSSASPSSSSYGQTSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSVSPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSTASPSSSSSGQPSEAPSSSSSPSSSSYGQTSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSTYSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSTSSSGQPSEDPSSSASPSSTSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPTSESTPCEESSVAPSSSASPSPSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSGQPSEAPSSSASPSSSSYGQTSEAPSSSASSSPSSSEQPSETPSSSASPSPSSSEQPSETPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSGQPSEAPSSSASPSSSSSEQPSEVPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPISESTPCEESSVAPSSSASPSSSSSEQSSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSGQPSEAPSSSASPSSSSYGQTSEAPSSSAAPSPSSTEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPNSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPISESTPCDESSVAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSGQPSEATSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSGSPSSSSSGQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQSSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPNSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPISESTPCDESSVAPNSSASPSSSSSEQPSAAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSGQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSGSPSSSSSGQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQSSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPNSSSSEQPSEAPSSSASPSSSSSGQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPISESTPCEDSSVAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSSEQPSEAPSSSASPSSSSYGQTSEAPSSSASPSPSSSEQPSEAPSSSASPSSSSSEQPSDAPSSSSSPSSSSSGQPSEDPSSSASPSSSSSEQTSEAPSSSASPSSSSSEQPSEAPSSSASTSSSSSEQPSEAPSSSASPNSSSSEQPSEAPSSSASPSSSSSGQPSEAPSSSASPSSSSYGQPSEDPSSSASPSSSSSEQSSEAPSSSASPSSSSSGQPSEAPSSSTSPSSSSYGQTSEAPSSSASSSPSSSEQPSEAPSSSASPGSSSSVQPSDASSSSASPSSETTPCEESSLATSSSASPSSSSSIHPSGGPSSSSLPSSGSNPWISSTRFPHHFTDSVGRQCYCY"
ORIGIN      
atgaaggtatccgcgacctctctactcttcattgtggtttctaccacggccctctcgataccggcaggtaatcgacagagtcaaaaaataggatcaatatcaaatcaaataaacaatatcagacctagccaaggaataaatgcagaaataaatgcaaatgcaaacggaggattaaaaacaggagctaattccaatataaatgcaggtaatcgacagggtcaaggaataggatcaatatcaagttcaaaaaacaatatcagagctaaccaaggaataaatgtaaacataaatgcaaatgtaaaaggaggatcaaaaacaggagctaatttcaatacaaatgcacaaatacaagcacaatcgaaaggaaaatcaaatataggagctaatttaggtatacatgcaggaataggtcaacaatggaatattccgtcaaattccaaacattcccaacataataataataacaattattataacgaatatccatattactttcctcgtataatcgaatttcctagaatacctaaacttccaaatatactttaccctttttggtctacgaaaactacatccactacaactgaaaaaccatgccacgatggatcaagtatgacttccactactgcacaaccaacaaaagcatcaacgagtaaaccatcaccaagtactaaatcttcttcttcggcgccaacaacccaaccacatagcaactcttcaccagcaggatcaggtgcaggaataggcggaggagtagcaggtggaataagtggatcaggatcaggttcaggaataaacgtccaaggaggtgcagcaggtggtgttggaaccggtacaggatcgggtaaaggaggcataggagtaagcattggagtaagtataggagtaggaggaggaggaaaatggagcagcacaagttcgccaagaacttccacctctgaaaaaccaagtaaagcaccgagcagttcggcatcaccaagttccgaaaatattccttgcgaagaatctagcgtagcaccaagcagctctgcccacccaagttccaccagctctaaaaaaccaagtgaagcaccgagcagctctgcctcgccaagtccttccagctctgaaaaacccagtgaatctcccagcagttccgcctcaccaagttcttccagctctggacaaccaagcgaagctccaagcagctctgcctcaccaagtccatccaatactgaacaatccagcgaagcaccgagcagttcggcatcaccaatttctgaatctactccttgcgaagagtctagcggagcacctagcagctctgcctcacctagttcttccagttctgaacaacctagtgaagctccaagcagctctgcctcaccaagttcatccagcactgaacaaccaagtgaagctcccagcagctctgcctcaccaagttcttctagctctgaacaaccaagtgaagctccaagcagctctgcctcaccaagtccatccagttctgaacaatccagcgaagcaccgagcagttcggcatcaccaatttctgaatctactccttgcgaagagtctagtgtagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagctctgcctcaccaagttcatccagcactgaacaaccaagtgaagctcccagcagctctgcctcaccaagttcttccagctatggacaaacaagcgaagctccaagcagctctgcctcaccaagttcatccagcactgaacaaccaagtgaagctcccagcagctctgcctcgccaagttcttctagctctgaacaaccaagtgaagcaccgagcagctctgcctcgccaagtccttccagctctgaacaacccagcgaacctcccagcagttccgcctcgccaagttcttccagctctggacaaccaagtgaatctccaagcagctctacctcacaaagtccatccagttctgaacaatctagcgaagcacccagtagttcggcatcaccaatttctgaatccactccttgcgaagagtctagtgtagcaccaagcagctctgcctcacctagttcttccagctcaggacaaccaagcgaagcaccaagcagctctgcttcaccaagttcttccagctatggacaaacaagcgaagctccaagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctcccagcagctcggcctcaccaagttcttccagctctgaacaacccagtgaagctcccagcagctctgtctcaccaagttcttccagttctgaacaaccaagtgaagctcccagcagctctgcctcgccaagttcttccagttctgaacaaccaagtgaagctcccagcagctctgcctcgccaagttcttccagttctgaacaacccagtgaagctccaagcagcactgcctcaccaagttcttccagctcaggacaaccaagcgaagcaccaagcagctcttcctcaccaagttcttccagctatggacaaacaagcgaagctccaagcagctctgcctcaccaagttcttccagctctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagttctgcctcgccaagtacttacagctctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagttctgcctcgccaagtacttccagctctggacaaccaagcgaagacccaagcagctctgcctcaccaagttctaccagctctgaacaacccagtgaagctcccagcagctcagcctcaccaagttcttccagttctgaacaacccagcgaagcaccgagcagttcggcatcaccaacttctgaatctactccttgtgaagagtctagcgtagcaccaagcagctctgcttcgccaagtccgtccagttctgaacaaccaagtgaagccccaagcagctctgcctcacctagttcttccagctctgaacaacccagtgaagctcccagcagctccgcctcaccaagttcttccagttctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagctctggacaaccaagcgaagcaccaagcagctctgcctcaccaagttcttccagctatggacaaacaagcgaagctccaagcagctctgcctcgtcaagtccttccagttctgaacaacccagtgaaactccaagcagctctgcctcaccaagtccttccagttctgaacaacccagtgaaactccaagcagctctgcctcaccaagttcatccagctctgaacaaccaagtgaagctcccagcagctctgcctcgccaagttcttctagctctgaacaaccaagtgaagctccaagtagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctcccagcagctccgcttcaccaagttcttccagctctggacaaccaagcgaagcaccaagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagttccaagcagctctgcctcaccaagttcttccagctctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagctctgcctcaccaagttcttccagctctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagcgaagcaccgagcagttcggcatcaccaatttctgaatctactccttgtgaagagtctagcgtagcaccaagcagctctgcctctcctagttcttccagttctgaacaatccagtgaagctccaagcagctctgcctcaccaagttcatccagctctgaacaaccaagtgaagcacccagcagctccgcctcaccaagttcttccagttctgaacaacccagtgaagctcccagcagctccgcctcaccaagttcttccagctctggacaaccaagcgaagcaccaagcagctctgcctcaccaagttcttccagctatggacaaacaagcgaagctccaagcagctctgccgcgccaagtccatccagtactgaacaacccagtgaagctccaagcagctctgcctcaccaagttcttccagctctgaacaacccagtgaagctcccagcagttctgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagctctgcctcaccaaattcttctagctctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagcgaagcaccgagcagttcggcatcaccaatttctgaatctactccttgcgacgagtctagcgtagcaccaagcagctctgcctcacctagttcttccagttctgaacaacccagtgaagccccaagtagctctgcctcgccaagttcttccagctctgaacaacccagtgaagctcccagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctcccagcagctccgcttcaccaagttcttccagctctggacaaccaagcgaagcaacaagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagctctgcctcaccaagttcttccagctctgaacaacccagtgaagctcccagcagctccgcctcaccaagttcttccagttctgaacaacccagtgaagctccaagcagctctgcctcaccaagttcatccagttctgaacaacccagtgaagctccaagcagctctgcctcaccaagttcttccagttctgaacaacccagtgaagctcccagcag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//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]