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2024-11-15 16:27:54, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_045744455            3406 bp    mRNA    linear   INV 10-JAN-2022
DEFINITION  PREDICTED: Procambarus clarkii traB domain-containing protein-like
            (LOC123759413), transcript variant X8, mRNA.
ACCESSION   XM_045744455
VERSION     XM_045744455.1
DBLINK      BioProject: PRJNA793253
KEYWORDS    RefSeq.
SOURCE      Procambarus clarkii (red swamp crayfish)
  ORGANISM  Procambarus clarkii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059593) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Procambarus clarkii Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3406
                     /organism="Procambarus clarkii"
                     /mol_type="mRNA"
                     /strain="Jiangsu"
                     /host="Homo sapiens"
                     /db_xref="taxon:6728"
                     /geo_loc_name="China:Nanjing, Hongze Lake"
                     /lat_lon="31.14 N 118.22 E"
                     /collection_date="2018-05-09"
                     /linkage_group="LG23"
     gene            1..3406
                     /gene="LOC123759413"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 31 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:123759413"
     CDS             277..3240
                     /gene="LOC123759413"
                     /codon_start=1
                     /product="filaggrin-like isoform X5"
                     /protein_id="XP_045600411.1"
                     /db_xref="GeneID:123759413"
                     /translation="
MDTAADSSRESALQSPDSAIGVTPTLTPEQEFQNTIPEKLSERPIQFIEDTQTSIQVEQNSELVESGAEREKDDQRTQDLEQQQLEESGGVGEIWYSPGTPVEIYSLPSTSFSSIVVENENVESNKRKEGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRRSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSKGSHDVSRGSKGSHDLSWRSKGSHDLSRRSEGSHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDESRRGEGGHDVSRGSEGSHDVSRGSEGSHDVSQGSEGSHDVSRGSKGRHDVSQGSEGSHDVSQGSEGSHDLSRGSKGSHDVSRGSEGSHDVSRGSKGSDDASRGSKGSHDVSRGSEGSHGVSRGSKGSHGVSRGSEGCHGVSRGSEGCHDVSRGSEGCHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSSEVSRGSSEVSQGSSEVSQGSSEVSQGSSEVSQGSSEVSQGSSEVSQGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPR"
     misc_feature    <805..>1716
                     /gene="LOC123759413"
                     /note="serine-rich protein; Region: ser_rich_anae_1;
                     NF033849"
                     /db_xref="CDD:468206"
     misc_feature    <1465..>2250
                     /gene="LOC123759413"
                     /note="serine-rich protein; Region: ser_rich_anae_1;
                     NF033849"
                     /db_xref="CDD:468206"
     misc_feature    <2257..>3234
                     /gene="LOC123759413"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    <3028..>3234
                     /gene="LOC123759413"
                     /note="ORF080 virion core protein; Provisional; Region:
                     PHA02682"
                     /db_xref="CDD:177464"
ORIGIN      
aacacaatcagaactgtcagtttattgtacacgttacatgggatgaaatccgaccacaaaaacaaaacaaggacaatactgtacaaatactttagataatccgcgtaaattttgtgcgttaatccctatagccgggagccccgggactatcagtgtgttgttgagggccgcggtggatgggtcacgccccacgcttcttctcctttatcctccattctgctgcatgacaatttagtggctagatgacgtcattgggcgacttccacaattgaagtcatggatacagctgcagactcctccagggagtcggccctacagtcgccagactctgccattggtgtaacgcctaccttgacacctgaacaagagttccagaacactattcctgagaagctctctgaaaggcctatacaattcatagaagatacacaaacatcaatacaggtagagcagaatagtgaactcgttgaatctggggcagagagagaaaaagatgatcagagaacacaagatctggagcaacagcagttagaagagagtggtggagttggagagatctggtattcgcctggaactccagtggaaatttatagtctaccatcaacgtccttttcatcaattgttgttgaaaatgagaatgtggaaagtaacaaaaggaaagaaggccatgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgaaggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgggggagcaaaggcagccatgatgtgtcccgagggagcaaaggcagccacgatttgtcctggaggagcaaaggcagccacgatttgtcccggaggagcgaaggcagccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgagggagcgaaggcggccacgatgtgtctcgggggagcgaaggcggccacgatgtgtcccgagggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgagtcccgaaggggcgaaggcggccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccaagggagcgaaggcagccacgatgtgtcccgagggagcaaaggcaggcacgatgtgtcccaagggagcgaaggcagccacgatgtgtcccaagggagcgaaggcagccacgatttgtcccgggggagcaaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcaaaggcagcgacgatgcgtcccgagggagcaaaggcagccacgatgtgtcccgagggagcgaaggcagccacggtgtgtcccgggggagcaaaggcagccacggtgtgtcccgggggagcgaaggctgccacggtgtgtcccgggggagcgaaggctgccacgatgtgtcccgggggagcgaaggctgccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagctctgaggtgtcccgggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccagggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtaaagcaacaccaaattagtgtggataaaatggaagttgacaatattgcaaggttatccacttcgctaagtcggttacggataagctatattccaccattaattactctctctcgagaagttgtagaaaatttcagcgttgctcagatgacgagcatgacccaagaaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]