2024-11-15 16:32:49, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_045744451 3457 bp mRNA linear INV 10-JAN-2022 DEFINITION PREDICTED: Procambarus clarkii traB domain-containing protein-like (LOC123759413), transcript variant X5, mRNA. ACCESSION XM_045744451 VERSION XM_045744451.1 DBLINK BioProject: PRJNA793253 KEYWORDS RefSeq. SOURCE Procambarus clarkii (red swamp crayfish) ORGANISM Procambarus clarkii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059593) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Procambarus clarkii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3457 /organism="Procambarus clarkii" /mol_type="mRNA" /strain="Jiangsu" /host="Homo sapiens" /db_xref="taxon:6728" /geo_loc_name="China:Nanjing, Hongze Lake" /lat_lon="31.14 N 118.22 E" /collection_date="2018-05-09" /linkage_group="LG23" gene 1..3457 /gene="LOC123759413" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:123759413" CDS 241..3291 /gene="LOC123759413" /codon_start=1 /product="ribosome-binding protein 1-like isoform X2" /protein_id="XP_045600407.1" /db_xref="GeneID:123759413" /translation="
MTSLGDFHNVSRAEVVTDVLNITEGEEALELASNDMSKSLDISQMSLESESMDSEVMDTAADSSRESALQSPDSAIGVTPTLTPEQEFQNTIPEKLSERPIQFIEDTQTSIQQLEESGGVGEIWYSPGTPVEIYSLPSTSFSSIVVENENVESNKRKEGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRRSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSKGSHDVSRGSKGSHDLSWRSKGSHDLSRRSEGSHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDVSRGSEGGHDESRRGEGGHDVSRGSEGSHDVSRGSEGSHDVSQGSEGSHDVSRGSKGRHDVSQGSEGSHDVSQGSEGSHDLSRGSKGSHDVSRGSEGSHDVSRGSKGSDDASRGSKGSHDVSRGSEGSHGVSRGSKGSHGVSRGSEGCHGVSRGSEGCHDVSRGSEGCHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSEGSHDVSRGSSEVSRGSSEVSQGSSEVSQGSSEVSQGSSEVSQGSSEVSQGSSEVSQGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGALRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPRCPRGAPR"
misc_feature <856..>1767 /gene="LOC123759413" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature <1516..>2301 /gene="LOC123759413" /note="serine-rich protein; Region: ser_rich_anae_1; NF033849" /db_xref="CDD:468206" misc_feature <2308..>3285 /gene="LOC123759413" /note="transcriptional regulator ICP4; Provisional; Region: PHA03307" /db_xref="CDD:223039" misc_feature <3079..>3285 /gene="LOC123759413" /note="ORF080 virion core protein; Provisional; Region: PHA02682" /db_xref="CDD:177464" ORIGIN
cacaatcagaactgtcagtttattgtacacgttacatgggatgaaatccgaccacaaaaacaaaacaaggacaatactgtacaaatactttagataatccgcgtaaattttgtgcgttaatccctatagccgggagccccgggactatcagtgtgttgttgagggccgcggtggatgggtcacgccccacgcttcttctcctttatcctccattctgctgcatgacaatttagtggctagatgacgtcattgggcgacttccacaatgtaagtcgggcagaggtggtgacagatgtcctgaatataacagagggcgaggaggcactagagttggctagcaatgacatgtcaaagtcacttgacatttcacaaatgtctttagaaagtgaatccatggatagtgaagtcatggatacagctgcagactcctccagggagtcggccctacagtcgccagactctgccattggtgtaacgcctaccttgacacctgaacaagagttccagaacactattcctgagaagctctctgaaaggcctatacaattcatagaagatacacaaacatcaatacagcagttagaagagagtggtggagttggagagatctggtattcgcctggaactccagtggaaatttatagtctaccatcaacgtccttttcatcaattgttgttgaaaatgagaatgtggaaagtaacaaaaggaaagaaggccatgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgaaggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgggggagcaaaggcagccatgatgtgtcccgagggagcaaaggcagccacgatttgtcctggaggagcaaaggcagccacgatttgtcccggaggagcgaaggcagccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgtgtcccgagggagcgaaggcggccacgatgtgtctcgggggagcgaaggcggccacgatgtgtcccgagggagcgaaggcggccacgatgtgtcccgggggagcgaaggcggccacgatgagtcccgaaggggcgaaggcggccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccaagggagcgaaggcagccacgatgtgtcccgagggagcaaaggcaggcacgatgtgtcccaagggagcgaaggcagccacgatgtgtcccaagggagcgaaggcagccacgatttgtcccgggggagcaaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcaaaggcagcgacgatgcgtcccgagggagcaaaggcagccacgatgtgtcccgagggagcgaaggcagccacggtgtgtcccgggggagcaaaggcagccacggtgtgtcccgggggagcgaaggctgccacggtgtgtcccgggggagcgaaggctgccacgatgtgtcccgggggagcgaaggctgccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgagggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagcgaaggcagccacgatgtgtcccgggggagctctgaggtgtcccgggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccagggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctctgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtgtcccaggggagctccgaggtaaagcaacaccaaattagtgtggataaaatggaagttgacaatattgcaaggttatccacttcgctaagtcggttacggataagctatattccaccattaattactctctctcgagaagttgtagaaaatttcagcgttgctcagatgacgagcatgacccaagaaat
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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