2024-11-15 19:39:04, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_033379282 2589 bp mRNA linear INV 14-APR-2020 DEFINITION PREDICTED: Drosophila pseudoobscura trichohyalin (LOC26532712), mRNA. ACCESSION XM_033379282 VERSION XM_033379282.1 DBLINK BioProject: PRJNA622252 KEYWORDS RefSeq. SOURCE Drosophila pseudoobscura ORGANISM Drosophila pseudoobscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046681.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila pseudoobscura Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2589 /organism="Drosophila pseudoobscura" /mol_type="mRNA" /strain="MV2-25" /db_xref="taxon:7237" /chromosome="4" /sex="female" /tissue_type="whole body" /dev_stage="adult" gene 1..2589 /gene="LOC26532712" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:26532712" CDS 15..2393 /gene="LOC26532712" /codon_start=1 /product="trichohyalin" /protein_id="XP_033235173.1" /db_xref="GeneID:26532712" /translation="
MLNICIILLVFFNLTENLTRGSDFHENQESCFVSRELEDQCASVCYPTVKPLLKYMGICHQKDLQISGIQNQLQDQNEKVTKYKTQVEFLNKKLVDERSSSGLKNDLKETIDKVQNLRLELSGELKKLNRQKNNTVKDLNEEIDRLKLQLTSKELKEKNMEEKVEILKKKNSTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKDKTMEEKDELLKQKEKIMEEKDELLKKKDSTLKNLQEEIANVKIQLKRKDEQNEKTMIEKDEIIKQKDKTMEEKDELLKQKEKIMEEKDELLKKKDSTMKDLQEGIANVKIQLKSKDELLKQNEKTMIEKDELLKQKEKNMEEKDELLKKKEKNMEEKDELLKKKDNTLKNLQEEIANVKMQLKRKDEQNEKTMIEKDEIIKQKEKTMEEKDELLKQKKKIMEEKDELLKKKDSTMKDLQEEIANVKIQLKSKDELLEQNEKKIIEKNELLKQKEKNMEEMDELLKQKEKIMEEKDELLKKKDSTMKDLQEEIANVKIQLKSKDEILEQNEKTMIEKDELLKQKEKTMEDKDELLKQKEKKMEEKDELLKKKEKTMEEKDELLKKKDSTLKNLQKEIANVKMQLTSKDELLEQKEEQIKKKEQFIRHILDNADPKISETHTIDVPLAEPDERGWTIILQELEGSASLEKKLAQYKEKPFNNGNDSFFIGRKNLYFMTQASPHEILIQVKFVDGRSSSVQDIRFKMGNAEEDYTLRSVDDNLPNRKYSITEIKALMAIQVLMKRKMPFSSRDWKQLTIKFREIQ"
misc_feature <384..1934 /gene="LOC26532712" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 1983..>2354 /gene="LOC26532712" /note="Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085" /db_xref="CDD:412152" misc_feature 2238..2240 /gene="LOC26532712" /note="gamma-gamma dimer interface [polypeptide binding]; other site" /db_xref="CDD:238040" ORIGIN
tatattcccagaatatgttgaatatttgtattattctgttggttttttttaatttgacggagaatttgacacgtggttcagatttccatgaaaaccaagagtcgtgttttgtatcaagagaactggaagatcaatgcgcttccgtttgttatcccaccgtcaagccgttgcttaaatacatgggaatatgccatcagaaggatctacaaataagtggaattcagaaccaacttcaagaccaaaatgagaaggttaccaaatacaaaactcaagtagaatttctcaataaaaagttggtagatgagcgaagttcttctggcctcaagaatgacctaaaagaaaccatcgataaggtgcagaacctcagattggagctcagtggagagttgaaaaagttaaacagacagaaaaacaataccgtgaaggatctgaacgaagaaatcgacagattgaagttgcaactgacaagtaaggagctaaaggagaaaaatatggaagaaaaggttgaaatattaaaaaagaagaatagtaccttgaagaatctgcaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggataaaacgatggaagaaaaggatgaactcttaaaacagaaggagaaaattatggaagaaaaggatgaactattaaaaaagaaggatagtaccttgaagaatctgcaagaagaaatcgcgaatgtgaagatacaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggataaaacgatggaagaaaaggatgaactcttaaaacagaaggagaaaattatggaagaaaaagatgaactattaaaaaagaaggatagtaccatgaaggatctgcaagaaggaatcgcgaatgtgaagattcaactgaagagcaaggatgaacttttaaaacaaaacgagaaaacgatgatagaaaaggatgaactattaaaacaaaaggagaaaaatatggaagaaaaggatgaactcttaaaaaagaaggagaaaaatatggaagaaaaagatgaactattaaaaaagaaggacaataccttgaagaatctacaagaagaaatcgcgaatgtgaagatgcaactgaagagaaaggatgaacaaaacgagaaaacgatgatagaaaaggatgaaattataaaacaaaaggagaaaacgatggaagaaaaggatgaactcttaaaacagaagaagaaaattatggaagaaaaagatgaactattaaaaaagaaggatagtaccatgaaggatctgcaagaagaaatcgcaaatgtgaagattcaactgaagagcaaggatgaacttttagaacaaaacgagaaaaaaattatagaaaagaatgaactattaaaacaaaaggagaaaaatatggaagaaatggatgaactcttaaaacagaaggagaaaattatggaagaaaaggatgaactattaaaaaagaaggatagtaccatgaaggatctgcaagaagaaatcgcgaatgtgaagattcaactgaagagcaaggatgaaattttagaacaaaacgagaaaacaatgatagaaaaggatgaactattaaaacagaaggagaaaacgatggaagacaaggatgaactattaaaacagaaggagaaaaagatggaagaaaaggatgaactattaaaaaagaaggagaaaacgatggaagaaaaggatgaactcttaaaaaagaaagatagtaccttgaagaatctgcaaaaagaaatcgcgaatgtgaagatgcaactgacgagcaaggatgaattattagaacaaaaggaggaacaaattaaaaaaaaggagcagtttattaggcatattttggataatgcagacccaaaaatcagcgagactcatacaatcgatgttcctttggcagaaccagacgaaaggggttggacaattattttgcaagagcttgagggatcggctagtctagaaaagaagcttgctcaatataaagaaaagccgttcaacaatggaaatgattcatttttcatcggccgcaagaatctgtatttcatgacacaggcctcgccacacgaaattcttatccaagtaaaatttgtggatggcagaagttcttcggttcaagacattcgcttcaaaatgggcaacgcagaagaagactacacactcaggtcggtcgatgataatttaccaaacagaaagtactccattaccgaaataaaagcgcttatggcgattcaggttcttatgaaacgaaaaatgccattcagttctagggactggaagcaattgaccattaagttcagagagatccaataatagaagaaggaaccattatgcgcccttgatagagaagtatttttatatatttaaatacaatttttgaattcttcggtaattgatgaagctaccgtgaactaacgttaaaaaaatagtttaaaaaataaaagttaatgctggtttttctgttattttctggtattttttttggttcaataaatatggagaacaccaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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