2024-11-15 19:42:15, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_029494347 6594 bp mRNA linear VRT 16-JUN-2019 DEFINITION PREDICTED: Echeneis naucrates titin-like (LOC115036223), mRNA. ACCESSION XM_029494347 VERSION XM_029494347.1 DBLINK BioProject: PRJNA548465 KEYWORDS RefSeq; includes ab initio. SOURCE Echeneis naucrates (live sharksucker) ORGANISM Echeneis naucrates Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042532.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Echeneis naucrates Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 44% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..6594 /organism="Echeneis naucrates" /mol_type="mRNA" /db_xref="taxon:173247" /chromosome="22" gene 1..6594 /gene="LOC115036223" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:115036223" CDS 1..6594 /gene="LOC115036223" /codon_start=1 /product="titin-like" /protein_id="XP_029350207.1" /db_xref="GeneID:115036223" /translation="
MGDAQSAQREESGKAEDTEDKPFKNNKQISEINGKADSATAQVNAHCEDEMAAEDEDISKTATSLKGEVENVEMNGKEAANEADAHEDVPLEMTEMDVKQNDINEGFRRFFRNIGLKLTVKKGTAENAEMAADEMNQEEFVEVATEETKSEEHTDLKTAPETYDNDSTTCPTLTDATSEDVLQNAEEKTTDAKEVAESDIVDASPAHDDEKVQQDAALDEDQQPTSESEVVVSPIKRFFTTGIFSGLQKKKKLTEDEISEKELMEIERKHTVEEAEGCVNAQQEKEEISLGVEADPDETGQKDNKLKEEILPAASAQATDDAVSITVNEPEILSYQEKVQASPLKRLLSGSNLKKLSKKQKGRRSSDSRLSDFGDQFSDQLLSFKEPTEHQKEESPAAGEEGAWASFRKLVTPKKHPKTSAETQIPGSEEQTKPSDREQISSYSTEEGKKRKDSSVSWDAVLCGSGRRRSRSRKTSDSEDETPPAENDNKKHQSPPESSNEVDESSHKKSGSPSEADGGSTWKSFKKLVTPKRKLKDEEENRDTAQSDSEVPRDDSSFSIKKLLPGRKKSKSSEKQDQTSSDEADKDVASADEDSETPAVVPLSEFDAVETGVHIQTQAAVESHVPKEAEYELQHDLQDHTAEPLVPFDNLPTEIKKAQDEQDVLENEGSTTPTSNEEAEDLTEIISKHQQLSDIPEEGIITETMATPASAAEETARDDTLAEDLIEITSEAITAPEPVDVTLTDETEMISAVSQLSESSKTSGNTTPVPEEQDVKQTETLLHQVVETISTSPKEGLLCSDEINPERIVGSVSHQVLEMFLKEEPAILEIHRSSDATAINIGLNVEELDAANKHAVKPQRESVSEVNQSVSKESVPEVPSVRLDTAEIGVDEVHEVSVSHPEESIKELDSTDDSQTTEAVFLEALPEDEEIVADEGSVVGLHQEEIVADKGSVVQICQEEIVAEEGSVVQIPQEEEIVADEGSVVGLHQEEIVADKGSVVQICQEEIVAEEGSVVQLPQEEEIVAEEGSVVQLPQEEEIVAEEGSVVQIPQEEEIVADEGSVVRICQEEIVAEEGSVVQLPQEEEIVAEEGSVVQIPQEEEIVAEEGSVVQIPQEEEIVADEGSVVQIPQEEEIVADEGSVVGLHQEEEIVADEVSVVGLHQEEIVADEGSVVQLPQEEKPLEMDSHKAESAATQEGESKDGGVEQEVQTLTQNEDQVLQNITDQVEVEDKDKLPVEELQEAAMLNSEGGGVQLHEREIISEDSPATETHESKEETGHLTEDNVEAEREDEPQADDTEAEHVEEADVLETVRASLLDSEEGGAHLIATETGTPKEESVQLPEGEVPSKDIPTQSGTDETKEATENVSEISAEPENKELKTIALNTDNHQVAEVLQTMQEPTPASEEGGVQLLDKDEISETTAEVETVPDELKVETESLVDDDKPVDALETEHAPEIEAEAAQVTNLVSEEDGVQPPEKTDISEAIPEAETLDPTREPESNAEPEEDVPEVSLSRVNDVETEAEAEVKESMGTESGEEGRAEKPEKQISAEGDPEPDSINATASVTEEIQAELSRALEHNEEKPREITPQEDRAVQEDNATETVGELQTLAAVNGETADVQVRENVFSEMTPPTCVNNAEVTHEPEHEVHLSTVHVSIEGELPAAEVKNAVFEDALVSQVVTCYLKEASAAIPDASTAKTSENHKALIDTETSVQEFEETVMSAAPQDDDEVTESAEEGREVPTAQIEDSSSIQVQVVDVDVKSAQTIVDRVLQVGVTETKEVIDVCQETFEEVDHLSATSQTEELINEEKVTVREVIQHVKEKLPAAESLNVAMTEEAAAAAQQEVEDLTQTFVIPGSSDIICNPKEDLEETKPQLETSEADFKTEEVKLPSEELDRKKISEEAQISQMTQSQIVTHSNTGLVVPQNAGIISSVGSVDSPSSISLEFKINIQFGQAKAAVPPQPAEEKDELVKKTDVSQVEPEKEIIPPQSVDSQRQTEPTEASGQATEIRETVHSATAEKMVVMNQPILLDMGVQAIETVEPVEEIKSTERVTLNVQATETIQPVRQTEKREVFLSQPVLSEAVQETKPKEPVKPTKEENEDVWLDAEEEIYSQKETESSVERAEEPRKAESDQEEKTATPRGETAPAAKTEDEESQEEILKADATCEIESEGEDFAFALEQPETASASVSKLEED"
misc_feature <742..1788 /gene="LOC115036223" /note="DNA topoisomerase 2-like protein; Provisional; Region: PTZ00108" /db_xref="CDD:240271" misc_feature <2857..3384 /gene="LOC115036223" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature <3127..3927 /gene="LOC115036223" /note="K+-dependent Na+/Ca+ exchanger; Region: 2A1904; TIGR00927" /db_xref="CDD:273344" misc_feature <4084..4692 /gene="LOC115036223" /note="Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478" /db_xref="CDD:469786" ORIGIN
atgggagacgctcagtctgcgcagcgggaggagagcggaaaagcggaggacactgaagacaagccattcaaaaataacaagcaaatctctgagatcaatggaaaagcagacagcgccacagcacaagtaaacgctcactgcgaggatgagatggctgcagaggacgaagacatttcaaaaacagcaacgtcacttaaaggggaagtggaaaatgttgaaatgaatggaaaggaagcagcaaatgaagccgatgctcatgaagacgtccctctggaaatgactgaaatggatgtgaaacagaatgatatcaatgaaggttttaggaggtttttcaggaacattggtctgaagctgacagtgaaaaagggcacggctgaaaacgctgaaatggcagcagatgagatgaaccaggaagaatttgtggaagtcgccacagaagaaaccaaaagtgaagagcatacggacctgaaaacagcgccggagacttatgacaacgattccacaacatgtcccaccctgacggatgcaacatcggaagacgttctacaaaatgcagaggagaaaacaacagacgccaaagaggtggctgaatctgatatcgtagatgcttcacctgcacatgacgatgaaaaggtgcaacaggatgccgcactcgatgaagaccaacagccaacatccgaatcagaggttgttgtgtctccaattaaaaggtttttcacaactggaatcttctctggactgcagaagaaaaagaagctcacggaagacgagataagtgagaaagagctgatggagatagagcgaaagcacacagtggaagaagcagagggatgtgtaaatgcacaacaagaaaaggaggagatcagtttgggtgttgaggcagatccagatgagacgggacagaaggacaacaaacttaaagaggagattcttcctgcagcatcagctcaggcgacagacgatgcagtaagcatcaccgtcaacgagcctgaaattctcagttatcaagagaaagttcaagccagccctctgaaaaggctcctgtcggggtctaatttaaagaaactctccaaaaagcagaaaggcaggagatcaagtgacagtaggctgtcagactttggagatcagttttcagatcagctcctgtcatttaaggagccaaccgagcatcagaaggaggagagccctgcagcaggagaggagggagcgtgggcttctttcagaaagcttgtgactccaaaaaagcacccgaagacgtccgctgagacacaaatcccaggctcagaggagcaaacgaaaccaagtgacagggagcaaatatccagttacagcacagaagaaggcaaaaaacgaaaagactcttctgtgtcgtgggacgccgttctgtgcggatctgggaggagaaggagtcgaagtaggaagacatcagactctgaggatgaaacgcctccagctgaaaatgacaacaagaagcatcagtcgccaccagaaagttccaacgaggtcgatgaaagttcccacaaaaaatcaggaagtccttcagaggctgacggaggatctacgtggaaatcctttaaaaaactggtcaccccaaaaaggaagctcaaggacgaggaggaaaacagagatactgcacagtctgacagtgaggttcctcgggatgattcctcgttctcaataaagaaacttctcccagggagaaaaaagagcaagtcctctgaaaagcaggaccaaacatcttcagatgaggctgataaggatgtagcttcagccgatgaagattcagagacacccgctgtggtcccgctgtctgagtttgatgcagttgaaaccggagttcacatacaaacgcaggctgcggtagaaagccacgtcccgaaggaagcagagtatgaactgcagcacgacctccaggatcatacggccgaacctctcgtgccttttgacaacctgccaactgagataaagaaagcccaagacgagcaggatgttttagaaaatgagggatctaccactcctacttcaaatgaagaagcagaagaccttacagaaataatcagtaaacatcaacagctcagtgatattccagaggagggcataattacagagaccatggccactccggcttcagccgccgaagagacagcacgagacgacacactcgcagaggatctgatagaaatcacgtctgaggccataactgctccagagcctgtggacgttaccctgacagacgaaactgagatgatctctgcagtttctcagctatcagagtcttcaaaaacatctggcaacacaaccccagtcccagaagaacaggatgtcaaacagacagagacgctcctgcatcaggtggttgaaaccatctccacgagcccaaaggaaggcctgctgtgctcagatgagattaaccccgaaagaatagttggatccgtctcacatcaagtgctcgaaatgtttctaaaagaggagccagcaattctggaaatacacaggagctctgatgcaactgccattaacattggcctgaatgttgaagagctggacgcagcgaataaacatgcagtaaaaccccaaagagagagtgtatctgaagtcaaccaaagtgtttccaaagaaagtgtacctgaagttccttctgtgagattggacactgctgaaattggtgtagatgaagttcatgaggtcagtgtttcacatccagaagaaagtataaaagaattagacagcacggatgacagccagacgactgaagctgtgtttttagaagctttacctgaagatgaagagattgttgcagacgaaggttctgtagtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagacgaaggttctgtggtcggactccatcaagaagagattgttgcagacaaaggttctgtggtccaaatctgtcaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagacgaaggttctgtggtccgaatctgtcaagaagagattgttgcagaggaaggttctgtggtccagctccctcaagaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagaggaaggttctgtggtccaaatccctcaagaagaagagattgttgcagatgaaggttctgtggtccaaatccctcaagaagaagagattgttgcagatgaaggttctgtggttggactccatcaagaagaagagattgttgcagacgaagtttctgtggtcggactccatcaagaagagattgttgcagatgaaggttctgtggtccagctccctcaagaagaaaagcctttagaaatggactctcacaaagcagaatcagctgctacacaggaaggtgaaagtaaagatggaggtgtagagcaggaagtccaaactctgacacaaaacgaagatcaagtcttacaaaacatcacagatcaagttgaagtggaggataaagataaactacctgtggaggagttacaagaagctgccatgttaaattcagaggggggaggagtccaactgcatgaaagggaaataatatccgaagacagtcctgcaactgaaacacatgaatccaaagaggaaacagggcatctcactgaagataatgttgaggcagagagggaagatgaaccccaagcagatgatactgaagctgagcacgttgaagaggcagacgttttagaaacggttcgggcatccctgttagattcagaggaaggcggtgctcatctgattgctacagaaacaggaacacccaaagaagaaagtgttcaactgcctgaaggggaagtaccatcgaaggatattcccacacaaagtgggacagatgaaacaaaagaagcaacagagaatgtctctgaaattagtgccgagccagaaaacaaagaactgaagacaatcgctctaaataccgacaatcatcaagttgcagaagttttacaaactatgcaagaacccacaccagcttcagaggagggtggtgtgcaattgcttgacaaagacgagatatcagagaccacagcagaggtagaaactgttccggatgaactcaaagtggaaactgaatctctcgttgatgacgataagccagttgatgctttagaaactgaacatgctccagaaatagaagcagaagctgcacaagtaacaaacttagtctcagaagaagacggtgtccaaccacctgaaaaaacagacatatcggaggcaattccagaggcggaaactttagatccaacacgggaacctgaaagcaacgcagagccagaagaagatgtgccagaagtttcactgtctcgtgtaaatgatgttgaaactgaagcagaggctgaagtgaaggaatctatggggacagaaagtggtgaagaggggcgtgctgagaaacctgagaagcaaatatcagctgaaggtgatcctgaaccagactctataaatgccactgcctcagttacagaggaaatacaggcagaactgagccgggctttagagcataatgaggagaagccaagagagatcacgccacaagaagatcgggctgtgcaggaagacaacgccactgaaactgtaggtgagctacaaacattagcagctgttaacggggaaacagctgatgttcaggtcagagaaaatgtcttttctgaaatgaccccgccgacttgtgtaaacaatgctgaagttacacacgaacctgagcatgaggtgcatctaagcacagttcacgtcagtattgaaggggaacttccagcagccgaggtgaagaacgctgtgtttgaggatgccttagtcagccaggtggtcacatgctatctgaaagaggcctcagctgccataccggacgcttcaacggcgaagacatcagaaaatcacaaagctttgatagacacggaaacaagtgtgcaagagtttgaggagacggtcatgtctgcggcaccgcaggatgatgatgaagtgactgagagcgcagaggaaggcagagaggtcccaacagcacagattgaggacagtagcagcattcaggtgcaggtggttgacgtcgatgtgaaatcagcccagacgattgttgaccgagtgcttcaggtcggggtgacagagaccaaagaagttatagatgtttgccaggaaacatttgaggaagtggaccatctctctgccacatcacagactgaagaattaattaacgaggaaaaggtgactgtccgagaagtcattcaacatgtgaaggaaaaattaccagcagctgaatcgctgaatgtcgccatgacagaagaggccgcggctgctgcacagcaagaggtggaggatctcacacaaacattcgttattcctggaagttcagacataatctgtaatccgaaggaggatttggaggaaactaaaccccaactggaaacctctgaagcagatttcaaaactgaagaggtgaaattaccatcagaggaattagacagaaagaaaattagtgaggaagcacaaatatcacagatgacccagagccagattgtaacccacagcaacactggattagtagtcccacaaaacgccggaataatttcctctgtaggaagtgtggattctccctctagtatttccttagaattcaaaataaacatacagtttgggcaagcaaaggcagcagttcctccacagcctgcagaagaaaaagatgaactggtaaagaagacggacgtgtctcaagttgaacctgaaaaggaaataattcccccacaaagtgtcgacagccagagacagacagagccgactgaggcgtctggtcaggcaacagaaatcagagaaacagtgcactcagccacagcagaaaaaatggtggtcatgaatcaaccgatactgctggatatgggcgtgcaggccatagaaacagtagaaccagtggaggaaatcaaatccacagagagagtgaccctcaacgtccaggcgacagagacaatacagcctgtgaggcaaacagagaagagagaggtgttcctgagccagccggtgctgtctgaagctgtccaagaaacgaaaccaaaggaacccgtgaagccaaccaaggaggaaaatgaagatgtgtggctggatgccgaggaagaaatttactctcaaaaggaaacagagtcgtcggttgaacgggcagaggaacctcgaaaggcagaaagtgaccaggaggaaaagacggcgacacctcgaggtgaaacagctcctgctgccaagactgaggacgaggaaagtcaagaagaaatcctcaaagctgacgcaacgtgcgaaattgagagtgaaggtgaagattttgcttttgcactcgagcaaccggaaactgcaagcgcaagcgtcagtaagctcgaggaggattaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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