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2024-11-15 16:51:25, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_027276679            2534 bp    mRNA    linear   VRT 05-DEC-2018
DEFINITION  PREDICTED: Larimichthys crocea 3-oxo-5-alpha-steroid
            4-dehydrogenase 2 (LOC104939523), transcript variant X1, mRNA.
ACCESSION   XM_027276679
VERSION     XM_027276679.1
DBLINK      BioProject: PRJNA354443
KEYWORDS    RefSeq.
SOURCE      Larimichthys crocea (large yellow croaker)
  ORGANISM  Larimichthys crocea
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020856961.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Larimichthys crocea Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Larimichthys crocea"
                     /mol_type="mRNA"
                     /isolate="SSNF"
                     /db_xref="taxon:215358"
                     /chromosome="Unknown"
                     /tissue_type="blood"
                     /geo_loc_name="China: Southeast region"
                     /collection_date="Aug-2011"
     gene            1..2534
                     /gene="LOC104939523"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:104939523"
     CDS             775..1620
                     /gene="LOC104939523"
                     /codon_start=1
                     /product="3-oxo-5-alpha-steroid 4-dehydrogenase 2 isoform
                     X1"
                     /protein_id="XP_027132480.1"
                     /db_xref="GeneID:104939523"
                     /translation="
MECRTTVVSYLSWILIGGGMAYLLHQKRNHARYGRYVTVDPRCCSARLGWFLQELPAFLLPLLLLFTEESSGQWTRRMVLLCTFMLHYFHRSIIYAFLTRGRPVPLPIVFYAAIFCSLNGFLQGHHLLHCARPEDLRLTDTHTAAGLVLFVVGMSINIHSDHILRSLRKPGETVYRIPHGTTPEPDPHHTLIHPRTSTCIIVGGGLCFSGGMFEFVSGANFFGEIVEWCGYAVATWSLPTFAFAFFTICSIGPRACHHHRDYQQRFEDYPRSRKALIPFIL"
     misc_feature    1078..1617
                     /gene="LOC104939523"
                     /note="3-oxo-5-alpha-steroid 4-dehydrogenase; Region:
                     Steroid_dh; pfam02544"
                     /db_xref="CDD:460585"
ORIGIN      
ctgtctctctctctgtctctctctgtctgtctctctctgtctgtctgtctgtctctgtctctgtctgtctgtctctgtctctgtctccatctgtacactaaggtggaatagttacaagctttggacccaaacagaaccttgtcgtgtccatggttacagggtgcagcgttctgtcagcagatgttttcagcacggacctatgaggagctgcacacagctctctgcattgtctcactgtgacaagttggcactagctgcagttccaatcgtgaacagctgatcggtggagctttgctgatctggaggatcagctgtggagaaaaactgactgcaactttggaatcagcagaaaattctaactctgtttcaactgtttcaagtgttccccggtgtaatcagagggaagttacaatatttgatttaaagcaacctgctcgactcgtttctgcggtgacaccgtctgactcactgcatctgaacacggtgaagtaacttcctcttcctccttctgtcgctctgctgcttcagacccgggaacagtctacagacccgggaacagtctacagacccgggaacagtctacagacccgggaacagtctacagctgctgcagactgtctaaaacctggacgtagtctctgtgacgtccccgcagactgtctaaaacctggacgtagtctctgtgacgtcctcgcagactgtctaaacctggacgtagtctctgtgacatctcaggtactggttcttatttgtcgtacagggtgaagtggactgatggagtgccggaccacagtcgtttcttacctgagctggattctgattggtgggggcatggcctacctgctgcaccagaagcggaaccacgcacgttatggtcgctacgtgacggtggatcctcgctgctgttcggccagactgggctggttcctgcaggagctaccggccttcctgctgccgctgctgctgctgttcacagaggagtcgagcggacagtggaccaggaggatggtgctgctctgcaccttcatgctgcactacttccacaggagcatcatctacgccttcctgacccgaggacgacccgtcccgctgcccatcgtcttctacgccgccatcttctgctcgctcaacggcttcctgcagggccaccacctgctgcactgcgcccgccccgaggacctgcggctgacggacactcacacggctgcaggtcttgttctgtttgtggtcgggatgagcatcaacatccacagtgatcacatcctgcgcagtctgaggaaacctggagagaccgtctacaggatcccccacggtaccacaccagaaccggatccacaccacaccctgatccaccccagaacctccacgtgtataattgttggcggtggtctttgtttttcagggggaatgtttgagtttgtttctggagcgaacttcttcggggagatcgtggagtggtgtggttatgctgtagctacctggtctttacccaccttcgccttcgccttcttcaccatctgctccatcgggcctagagcctgccaccaccacagagactaccagcagaggtttgaggactaccctcgctccaggaaagctctcattcctttcatactgtgaccatgaagagtgtctgctgcatgtattagcattagcataatctatgatagctgacatgacctctaataactttaacatctaacattagctctgaaagctaacattagctctgaaagctaacattagctctgatgactaacattagctctgaaagctaacattacctctgatagctaacattagctctgatgactaacattagctttgatgactaacattagctctgaaagctaacattagctctgatagctaacattagctctgatgactaacattagctctgatagttaacgttagctctgaaagctaacgttagctctgaaagctaacattagctctaatgactaacattagctctgatagttaacattagctctgttgaataacattagctccgaaagctaacattagctccgatagttaacattagctctgaaagctaacattagctctgatagctaacattagctctgatgactaacattagctctgaaagctaacattagctccgatagttaacattagctctgatagctaacaatagctctgaaagctaacattagctctgatagctaacattagctccgatagttaacattagctccgatagctaacattagctctgatagctaacaatagctctgaaagctaacattagctctgatagctaacattagctccgatagttaacattagctccgaaagctaacattagctctgatagctaacattagctctgatagctaacaatagctctgaaagctaacattagctcatgttaatgccaacagacctcacctcatgacgttttccatcgaggttatgaaaggtgtttaggaaaggtggttatgaaaggtgtttaggaaaggtggttaggaaaggtgtttaggaaaggtggttaggaaaggtgttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]