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2025-04-22 02:14:46, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XM_025457194            1985 bp    mRNA    linear   MAM 15-JUL-2022
DEFINITION  PREDICTED: Canis lupus dingo alkaline ceramidase 1 (ACER1),
            transcript variant X3, mRNA.
ACCESSION   XM_025457194
VERSION     XM_025457194.3
DBLINK      BioProject: PRJNA477859
KEYWORDS    RefSeq.
SOURCE      Canis lupus dingo (dingo)
  ORGANISM  Canis lupus dingo
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_064262) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 15, 2022 this sequence version replaced XM_025457194.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Canis lupus dingo Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Canis lupus dingo"
                     /mol_type="mRNA"
                     /isolate="Sandy"
                     /sub_species="dingo"
                     /db_xref="taxon:286419"
                     /chromosome="20"
                     /sex="female"
                     /tissue_type="muscle"
     gene            1..1985
                     /gene="ACER1"
                     /note="alkaline ceramidase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon."
                     /db_xref="GeneID:112666366"
     CDS             185..892
                     /gene="ACER1"
                     /codon_start=1
                     /product="alkaline ceramidase 1 isoform X3"
                     /protein_id="XP_025312979.1"
                     /db_xref="GeneID:112666366"
                     /translation="
MQKFSNVTFFIFGPLMMFLMHPYAQKRSRYVYIICILFMVIGLFSMYFHMTLSFLGQLLDEIAILWLLASSYSIWMPRCYFPTFLGENRPHFICFVIITTVISTFLSFLRPVINAYALNSIAVHILYIVFQEYKKTSNKELRHIMEVSVILWAFALTSWISDRLLCSFWQQINFFYLHSIWHVLISITFPYGMVTMALVDARYEMPGHTLKVRYWPRDTWPVGLPYVEVSDNKNC"
     misc_feature    194..868
                     /gene="ACER1"
                     /note="Region: Ceramidase; pfam05875"
                     /db_xref="CDD:461766"
     polyA_site      1985
                     /gene="ACER1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
atgacatcatctttcagatggccaagggaatatgtgcttgcatagtcctggattttgaaaatttctcagtttcaatatctaatacagtcaatcttgataaatatagctcacatttgagaaagaaaaaagtaatagattcattgacatttctatcttgtttctaaaaggaaaagagggtgaatgtatgcagaagttcagcaatgtcaccttcttcatctttgggcctctcatgatgtttctgatgcacccctatgcccagaaacgctcccgctatgtttacatcatctgcatcctcttcatggtcataggcctgttctccatgtacttccacatgacgcttagcttcctgggccagctgctggatgagatcgctatcctgtggctgctggccagtagctacagcatatggatgccccgctgctactttcccactttcctaggagagaacaggccccatttcatctgcttcgtcatcatcaccactgtgatcagcaccttcctgtccttcctgaggcccgtgatcaacgcatatgccctcaacagcatcgctgtgcacatcctctacatcgtgttccaggaatataagaagaccagcaataaggagcttcggcatataatggaggtctccgtaattttatgggcttttgcattgaccagctggatcagtgaccgcttgctttgcagtttctggcaacagatcaatttcttttacctgcatagcatctggcatgtgctcatcagcatcacctttccttatggcatggttaccatggccttggtggatgccaggtatgagatgccaggtcacaccctcaaagtccgctactggcctcgggacacttggcccgtggggctgccctatgtggaagtcagtgacaacaagaactgctgacgtctgctagttccttgactacccaagcacctgccaactcgcctgcatcttggggagggagccctgcatcaggaatctgagaggcactcacggttctttccttcagctccctttccccatcctccttgtcctgcatggccccaccccaagacaagtgatgacttcctgagccttctgtgcagcaatctgatgaccctgggggagcagcctggcatagctccccatccacgacctgtccttattctctttcacttcttcctttgtgttcactttgtgaggctggatcaccaggtgctgtgaggacctggcaaccactggcaaggacttcaggctgaggcttggtgcccaggcatttcataaatagtggcagtcactaccagaccctttggacctgtctttggccatgcaatgtccctgggacttggggggcatcccagagaacagacacctcattctgcactcactcatgtgtgtggagaccttgcagggtctaaggcggccacctcactggtaggcagtgaagcaacttggaggcccagactgggtaatctggctgtcgttggggcatgagcatcagaaggggagcaggggtgagctcttaaagtgagaggaggacaagaggatgattaaaaacaacaacaacaacgggatccctgggtggtgcagcggtttggcgcctgcctttggcccggggcgcgatcctggagacccgggatcgaatcccacgtcgggctccctgcatggagcctgcttctccctctgcctgtgtctctgcctctctctctttctctctgtgtgactatcataaataaataaaaaaaattaaaacaacaacaacaacaacacaataacaacacctcaacaagaacaagaagaggatgatttccatggtggttaagagcacagggcttggggttaagcagatgtaagctcgaatcctgctccaccattccgcagctgtataatctgggggaagtgattgttctctcctttgaagctcaagcacctgtaataagtctgtgatgtgaaaatgtttctcccgtcatgggatttttgcttggataaaatatgtataaaaagcatttatcatgga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]