GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 16:40:21, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_022029267            2451 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Lobosporangium transversale hypothetical protein
            (BCR41DRAFT_402015), partial mRNA.
ACCESSION   XM_022029267
VERSION     XM_022029267.1
DBLINK      BioProject: PRJNA396744
            BioSample: SAMN05421885
KEYWORDS    RefSeq.
SOURCE      Lobosporangium transversale
  ORGANISM  Lobosporangium transversale
            Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota;
            Mortierellomycotina; Mortierellomycetes; Mortierellales;
            Mortierellaceae; Lobosporangium.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Mondo,S.J., Dannebaum,R.O., Kuo,R.C., Labutti,K., Haridas,S.,
            Kuo,A., Salamov,A., Ahrendt,S.R., Lipzen,A., Sullivan,W.,
            Andreopoulos,W.B., Clum,A., Lindquist,E., Daum,C.,
            Ramamoorthy,G.K., Gryganskyi,A., Culley,D., Magnuson,J.K.,
            James,T.Y., O'Malley,M.A., Stajich,J.E., Spatafora,J.W., Visel,A.
            and Grigoriev,I.V.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Pervasive Adenine N6-methylation of Active Genes in Fungi
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2451)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2451)
  AUTHORS   Mondo,S.J., Dannebaum,R.O., Kuo,R.C., Labutti,K., Haridas,S.,
            Kuo,A., Salamov,A., Ahrendt,S.R., Lipzen,A., Sullivan,W.,
            Andreopoulos,W.B., Clum,A., Lindquist,E., Daum,C.,
            Ramamoorthy,G.K., Gryganskyi,A., Culley,D., Magnuson,J.K.,
            James,T.Y., O'Malley,M.A., Stajich,J.E., Spatafora,J.W., Visel,A.,
            Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2016) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_019029051).
            
            ##Metadata-START##
            Organism Display Name :: Lobosporangium transversale NRRL 3116 v1.0
            GOLD Stamp ID         :: Gp0046759
            ##Metadata-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Lobosporangium transversale"
                     /mol_type="mRNA"
                     /strain="NRRL 3116"
                     /type_material="type material of Echinosporangium
                     transversale"
                     /db_xref="taxon:64571"
                     /chromosome="Unknown"
     gene            <1..>2451
                     /locus_tag="BCR41DRAFT_402015"
                     /db_xref="GeneID:33571110"
     CDS             <1..2451
                     /locus_tag="BCR41DRAFT_402015"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_021875676.1"
                     /db_xref="GeneID:33571110"
                     /db_xref="JGIDB:Lobtra1_402015"
                     /translation="
SAALFTLSKQCSATSAAVFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQLFSPCQNCAQRLRLLSKQLCSSFHLVKIVPRDFGCCQNSSAALFTLSKQCSATSAAVFTLSKLCPETSAVVKTALQLFSPCQNCAQRLRLLSKQLCSSFHLVKTVLSHFGSCFHLVKIVPRDFGCCQNSSAALFTLSKQCSATSAAVFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQLVSPCQNCAQRLRLLSKQLCSSFHLVKTVLSHFGSCFHLVKIVPRDFGCCQNSSAALSTLSKQCSATSAAVFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQRFSPCQNCAQRLRLLSKQLCSSFHLVKIVPRDFGCCQNSSAALSTLSKQCSATSAAVFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQLFSPCQNCAQRLRLLSKQLCSSFHLVKTVLSHFGSWFHLVKIVPRDFGCCQNSSAALFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQRFSPCQNCAQRLRLLSKQLCSSFHLVKTVLSHFGSWFHLVKIVPRDFGCSQNSSAALSTLSKQCSATSAAGFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQRFSPCQNCAQRLRLLSKQLCSSFHLVKTVLSHFGSCFHLVKIVPRDFGCCQNSSAALFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQLVSPCQNCAQRLRLLSKQLCSSFHLVKIVPRDFGCCQNSSAALFTLSKQCSATSAAGFTLSKLCPETSAVVKTALQLFSPCQNSAQPLRQLFSPCQNCAQRLLRVKD"
ORIGIN      
tctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctggtttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctctttccaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagcggttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctctttccaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctctttccaccttgtcaaaacagtgctcagccacttcggcagctggtttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagcggttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctggtttcaccttgtcaaaattgtgcccagagacttcggctgtagtcaaaacagctctgcagctctttccaccttgtcaaaacagtgctcagccacttcggcagctggtttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagcggttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctggtttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctggtttcaccttgtcaaaattgtgcccagagacttcggctgttgtcaaaacagctctgcagctcttttcaccttgtcaaaacagtgctcagccacttcggcagctgttttcaccttgtcaaaattgtgcccagagacttcttcgtgtcaaggactga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]