GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 22:06:41, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_020799488            6974 bp    mRNA    linear   VRT 10-APR-2017
DEFINITION  PREDICTED: Pogona vitticeps testis and ovary specific PAZ domain
            containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_020799488
VERSION     XM_020799488.1
DBLINK      BioProject: PRJNA382134
KEYWORDS    RefSeq.
SOURCE      Pogona vitticeps (central bearded dragon)
  ORGANISM  Pogona vitticeps
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata;
            Toxicofera; Iguania; Acrodonta; Agamidae; Amphibolurinae; Pogona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018150950.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Pogona vitticeps Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6974
                     /organism="Pogona vitticeps"
                     /mol_type="mRNA"
                     /isolation_source="Queensland, 58 km west of Eulo on
                     Adventure Way"
                     /specimen_voucher="1003387339"
                     /db_xref="taxon:103695"
                     /chromosome="Unknown"
                     /sex="male"
                     /geo_loc_name="Australia"
                     /lat_lon="28.098 S 144.465 E"
                     /identified_by="D OMeally"
     gene            1..6974
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:110082160"
     CDS             1101..6896
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="testis- and ovary-specific PAZ domain-containing
                     protein 1"
                     /protein_id="XP_020655147.1"
                     /db_xref="GeneID:110082160"
                     /translation="
MAVKYKHVVDINLEDKKFLMERKKLKDALGGHKQTASIVTSQNTLASQASKKRGSTPMKVELHRTNITIEKNCMNSLLEPEQITKNCVVATESLRKKLRHSLVKSEHYKEDVHKEDRSSVVELKSQKVTSSLQESSSCSLSEQEPQQKTWNLRKTAGPVFPEQKASKNQDKNKKTKRRGRHSIQHFSRLKCKGKKNCKSQLPIPENCSGNPVKARWSSVSHFSGNLETTKLSSRLDRTQRQANSSMLRLTELQEPERKTHDFSVALTITDFLESVEVTKQKSRCLLKCVENHEEIKKCRSGVEKEMHRMITRGFLKSKLCENNSKKLNWKPKMYVSEVPDRKKDVFANSVVTEQAADCFTEDVLVTRIGSDSKQQIGGKEEFLTSTELKKESRTSRKQTLEVSNIQLGKLSETVFGISQDCSIQNFLEQSAHHPVSKSDETENKDPVSLSFGKVSETNCALTNTKCPQLLDIKVAEKKSGVHQDEEVEWLSKHGGLPHRVERIPVVRLHDCCYIKALLKPTGIKTIQNYRDHFRSLHVVHDQGKVLPPSRGMGQNDSNSSSNVVQPGRYVPEKSILVKKEMCQNSNKLSEYQNGKRFRESKRCVDKKPTKKIRISKKLEKSIVQNVFTSTNIQGQCGLQIKEEPDTLGSSVLEIVKCDETTCLSSLDCIPDFQEQCPQTLQNQIVNLLNSEKMRETHLVTCNTSNFEKSAVLRRRKNVLELESTEPQTEFSSKVTDTNSLAELLVSGKISSCDSIVASGVERGKRSPTIKRASKTERNFQPYSCQRAVPISGKNVWPRESCARTSLWFHDSRMADLEKGFLRSTDSSVNPGQTDLHEALTDTRKGLTDNITDVKIKESPTSESVFCIGKVISTFDNKNRFTSMGMERPKRCTPSTKMGKQSKVDSESLGKDAKSKGNIIKGGKIVDKHSSTLVSAKGKMKYQKISVVKQEMLLQKLHTENLSDFRIPILKDKNETIKKEYATSPEKSVCSLLDILEDPTASVRKGEEALSGHQFQSQEVTSTNILEEHANQFNSDTSESNFKEGTACKGKLVCTSLDSKLETSTWKDNSSSFTAGDTKNQTFGTVLASEIKSEDEYSNYLTQEEDNFYADVMKAYENDVLVIDVIQDDPDLFGDTEEQESSCNEEYCTENKSSTTVFSGQEVKLEPEVPQLPGISHWRLYPREVPIQDCGTMKSVIDVPLTVDSLSGISSVEGKTESSVEEEQLIESDELIKGYYRDEKCKLSKKIVAVKEEKANIQATVKIENAQHIEPVSHNHQLELPSPVMKTSGPQLQSTAVKPWTNDCRLLRNNLHLPSYPTNYVAWKKDKTGVTNVGLISVPNGYCRSYFNTLKGCGRTKCWYWHVPKPENEKFFSEILEKYISIGEAGLLKRAVQIFTNFYKEGILSLHFNSQVLNDLLISLLQSCLLKELFYVVHTCITIKILPTVDILLRTFEQVASMNLKELVPDLIDVSCKLVDAGMILEYEHVGCIRKFLNQLQLSSQEITTFTSRFQGTYLHKASLCDFTSAVAEFQHCKEKGDWARLGTLYVNLRRRCENFDDLEKYSLCIADILTSFVKEERPAIPFCEFAAAVNADAYHNEADRTLLGRIGISVMFSYYRKQQWLKARKVLDVLHTLKIPFTFLKGLLGPERLVSRCCIVNVAVEIFLKCGSLDGAIWVLRESEWVINSLSWPCNRMDVLSRHNLLCTIASEYITKSRHGEAFEVLQNLPGFQNSCDSMDVSQYSFLFNKLLGACLDNEHIGISSTVMEFMFSKNIPVEFKLLRAMITSLGRSCMWLKARTHYKSALALGCYPPQEGNLYHKRLLIPSFMSEIEMLLGIEIFLVSNASSIQSPGAFNQILQIVLKRCEGHSIQKEEDYQSATERLIQAARISSPKLFIKLLTVNVNKEKVYSLKYASVLKWLKENMKWAGKVWLF"
     misc_feature    5685..6212
                     /gene="TOPAZ1"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
ORIGIN      
gcttttctctctttcagagtgtgagtgcgcgaagggaggctcggcggcaggcggcgtggcgaccgcgcgaagagagaagttggcggcgttgcggaaagtcctcctttcgggcctgtaaaacgaagcatgcgcagggatgggatgtagtagccttagggcctgccttaattggggttggttacaaggcgggcgttgagttgtaagcgaaaggaagtggccgcgtggagttgcgcgcgggctcctcgaaggacagcttttgtaggggggatgttgtagggccgacgacctgaacaatgctctttagatttgtgatgatgttaaatggaggcgagggtgttaaatggagagttttttgagagtagtaaacggggttggtttccagttggtttcagagaaggcggaatacgagacccacgtgtcttaccttaaatcgtaaatccttacgaagtggggggggtcgttcagacgagtccctggtgttgacacgcaaactctgtttttgtccctgttttgatcatggtttttttaatggtgccctgacaaaagaagtgtcgagtggcgtggcaggccatcaagtgaaatcctttaagcgtctcttaattctttcgattaaaaaatattttaagtttgagactttttgggcagccagtaagatgaaagttaggaggtttattgctgacatagaacgggttcatttataacgctgttgatttaagaaatcataggtaagcctgattttgtggagaaggttgtgattggttgtatgatttacagataatgaaaatgcacctgtcggaaaagcttattcgtttgggtagtttattccagggttgtgcaaaaaagccagagtaataagcaagaacacacttcattttatttgttttcatgatctgggcgacaatccagagcacccaaccatagttgttatcattaaatctcagagaaatcaaagttgcagaaacaggcaatttgtctctcttggtaaaacttaggaacttgagcagacaacacactcatatttttggggaactcttaatgaagcagcaaaaaagaaacaagggcttgtctttaaaagcaagagaagtggggaaagtagtaccatggcagtgaaatataaacatgttgtagacataaacttggaagacaaaaagtttttaatggaaagaaagaaattgaaggatgctctaggaggacataagcaaactgcttctatagttacttcgcaaaatacgttagcatcacaggctagcaagaaaagaggtagtaccccaatgaaagtggaattgcatagaacaaacataaccattgagaaaaattgtatgaatagcttgctggaaccagaacaaataaccaaaaactgtgtagttgctacagagagcttgagaaaaaagctgagacattccttagtaaaatcagagcattacaaggaagatgtacacaaggaggacaggagttctgtagttgagcttaagtctcagaaagtaacaagcagcttgcaggaaagtagcagctgttccctctcagaacaagagcctcagcagaaaacatggaatttgagaaaaacagctggaccagttttccctgaacaaaaggcttccaagaaccaggacaaaaacaaaaaaacaaagaggaggggtagacatagtattcaacacttcagccgcttgaagtgtaaggggaaaaagaactgtaaatcacagttaccgatccctgaaaattgttcaggaaatccagtaaaggcgaggtggtcttctgtatcccacttcagtggtaatcttgaaaccaccaagttgtccagccggctggatagaacacagaggcaagcaaatagttccatgttgaggttgacagagcttcaggagccagaaaggaaaacacatgatttttctgttgcactgactatcacagattttttggaaagtgtggaggttacaaaacaaaagagtcggtgtttattgaaatgtgtagaaaatcatgaagagattaaaaaatgtagaagtggtgtagaaaaagaaatgcataggatgataacaagaggttttttaaaatcaaagttgtgtgaaaataatagcaagaaactaaactggaagccaaaaatgtatgttagtgaggttcctgaccgtaagaaggacgtttttgcaaacagtgtggtaacagaacaagcagcagactgttttacagaggatgtgctggttactagaatagggagtgatagtaagcaacagataggtggaaaagaggaatttctgacttcaactgaacttaaaaaagagagcagaacatctagaaagcaaaccctggaagtttcaaacatacagcttgggaaactgtcagagactgtttttggtatttctcaagattgtagtatacagaatttcctagagcagtctgcacatcatccagtatctaaatcagatgagactgaaaacaaagatcctgttagcctttcatttgggaaggtgtctgaaacaaattgtgctcttacaaacaccaaatgtccacagctcttggatataaaagtagctgaaaagaaatcaggagtgcaccaggatgaagaagtagagtggctttctaagcatggtggcttgccacacagagtagaaaggattccagtagtgagactgcatgactgctgttacattaaagcattgttaaaacctactggtatcaagaccattcaaaattatagagatcattttcgatccttgcatgttgtgcatgatcagggaaaggttctccctcctagtaggggtatgggacagaatgattcaaatagtagctcaaatgtagtgcaacctggaaggtatgtgccagaaaaaagcatactggtgaaaaaagaaatgtgccaaaatagtaacaagttgtcagaataccaaaatggaaaacgcttcagggaaagtaagcggtgtgtggataaaaagccaaccaaaaagataagaatatcaaaaaaactagaaaaatccatagtccagaacgttttcacaagtacaaatatacagggtcagtgtggactgcagataaaagaagaacctgacacattgggttcttcagttttggaaatagtaaagtgtgatgaaacaacttgcttatcttcacttgactgtattccagattttcaggagcagtgtcctcagacacttcagaatcaaattgttaacttgcttaacagtgaaaaaatgagggagacacacttagtcacatgcaacaccagtaactttgagaaatctgcagttcttagaagaagaaagaatgtgcttgagttagagagcacagaaccacaaacagaatttagcagtaaagtgactgatactaattccctggcagagttactggtcagtggaaaaattagtagctgtgatagcattgttgctagcggtgtggaaagagggaaaaggtcacctaccataaaaagagcaagtaaaactgagaggaatttccagccatacagctgtcaaagagcagtcccaatttctggtaaaaatgtatggccacgtgaatcatgtgccagaacctccttgtggtttcatgatagtcgtatggctgacttggaaaaaggatttttaaggagtactgattcatcagttaaccctgggcagacagatctgcatgaggctttgacagatactagaaaaggtttaacagataatataacagatgtcaaaataaaagaaagcccaacttcagaatctgtattttgtataggcaaggttatttcaacctttgataataaaaatagatttacttccatgggtatggaaagacctaaaaggtgtacacctagtactaaaatgggaaaacaatcaaaagtggattcagaatctctaggaaaagatgcaaaaagtaaaggaaatataataaagggggggaaaattgtagataagcacagtagtacgttggtgagtgcaaaaggcaaaatgaagtatcagaagatatcagttgtcaagcaggaaatgttattgcaaaaattacatacagaaaatctttcagacttcagaattcctatactcaaggataaaaatgaaactataaagaaggaatatgctacatcgccagaaaagagtgtttgcagtcttctggatattctggaagatcctactgcttctgtaaggaaaggtgaagaggctttatctgggcaccaattccagtcccaggaggttacttctactaatatactggaggaacacgcaaaccaattcaacagtgacacttctgaaagcaattttaaagaaggaacagcctgtaaaggtaaattggtgtgcacttcacttgacagtaagctggaaacatcaacgtggaaagataattctagctctttcactgctggagatacaaaaaatcaaacatttggcactgttttggcatcagaaattaaaagtgaagatgaatatagcaattacttgacgcaagaagaagataacttctatgcagatgttatgaaggcttatgaaaatgatgttcttgtgattgatgtaattcaggatgatcctgatctctttggagatacagaagaacaagaaagttcttgcaatgaagagtattgcactgaaaacaaatccagtaccacagttttttcaggacaagaggtgaagctagaaccagaagtgcctcagcttccagggattagccattggagactctatcctagggaggttcccattcaagattgtggaactatgaagtcagtcattgatgttcctttgacagtagactccctaagtggaatcagttctgtagaaggtaaaacagagtcatctgttgaggaagaacagctgattgaatcagatgaactcataaagggttattacagagatgaaaagtgtaaattatctaagaaaattgttgctgtgaaagaagaaaaagcaaatattcaggccactgtaaaaattgagaatgctcagcatattgaacccgtgagccacaaccatcaattggaattaccatcccctgttatgaaaacgtctggtccacaattacagagcacagcagtgaaaccatggacaaatgattgcagattactaaggaacaatcttcatttgccatcttatcctaccaattatgtagcctggaaaaaagataaaactggagtgactaatgtaggattaatttctgtacctaatggatactgcagatcatatttcaatacattaaaaggttgtggaagaactaaatgttggtactggcatgttcctaaaccggaaaatgaaaagttcttcagtgaaatacttgagaaatatataagtattggtgaagcaggtctgctgaagcgtgcagtccagatatttacaaatttctacaaagaaggaattctcagcttacacttcaattcgcaagtgctgaatgacctgcttatatctttgcttcagtcctgtttgctgaaagaactgttttatgtagttcacacctgcataacaattaaaatactgccaacagtagacattcttctccgaacgtttgaacaagtggcttccatgaatttaaaagagctagtacctgacttaattgacgtttcttgtaagcttgtggatgctggaatgatccttgaatatgaacatgtaggctgtatcagaaagttcctaaaccaactacaactttccagtcaggaaataactacttttacgtccagattccagggaacgtatttgcacaaggccagtctttgtgactttacttccgcagtagcagaatttcagcattgtaaagaaaaaggtgactgggctagattgggaactttgtacgttaatttgaggagacggtgcgaaaattttgatgatcttgaaaagtactcgttgtgtattgctgacatcctaacaagttttgtcaaagaggagaggccagccattcctttttgtgaatttgcagctgcagttaatgcggatgcatatcacaatgaagctgacagaacattattgggaaggattgggatcagtgttatgttttcatattacagaaagcagcaatggctaaaggccaggaaggttctggatgtccttcatactttaaagatacctttcacatttttgaaaggacttcttggtccggagagactggtatcaagatgttgcattgtaaatgttgctgtggaaatatttctcaaatgtgggagcctagatggagcaatatgggtattgagagaatcagagtgggtaataaattccctgtcatggccgtgcaatagaatggatgtccttagtcgacataatctgctgtgtacaatagcatctgaatatattacaaagagtcggcatggagaagcatttgaagtcttgcaaaatctaccaggctttcagaattcttgtgatagtatggatgtatcccagtacagctttttgtttaataaactgcttggtgcttgtttagacaatgaacacattggaatatcatctacagtcatggagttcatgttttcaaagaacattcctgttgaatttaaattgcttagagcaatgattacatcattgggaagaagttgtatgtggcttaaagccaggacacattataaaagtgctttggcattggggtgctatccaccacaggagggaaatctttaccataagcgcctgctgataccatctttcatgtctgaaattgagatgttgttaggaattgaaatcttcttggtttcaaatgcaagtagtattcagagccctggtgctttcaatcagatacttcagatagtattgaaaagatgtgaaggccacagtatacaaaaagaagaggactatcaaagtgcaacggagagactgattcaagctgctcgtatatccagtccaaagcttttcataaagcttttgacagtaaatgttaacaaggagaaagtttatagtttgaaatatgcttctgtacttaaatggttgaaagagaatatgaaatgggcaggaaaggtctggcttttctagtcaattgttgataacactttagttgacagtaatcattgttcaaaataatatatcaataaaatacttttgttgtgttca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]