LOCUS       XM_015003659            1917 bp    mRNA    linear   VRT 15-DEC-2015
DEFINITION  PREDICTED: Poecilia mexicana ClpB homolog, mitochondrial AAA ATPase
            chaperonin (clpb), transcript variant X4, mRNA.
ACCESSION   XM_015003659
VERSION     XM_015003659.1
DBLINK      BioProject: PRJNA305619
KEYWORDS    RefSeq.
SOURCE      Poecilia mexicana
  ORGANISM  Poecilia mexicana
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Poeciliidae; Poeciliinae; Poecilia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015095487.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Poecilia mexicana Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Poecilia mexicana"
                     /mol_type="mRNA"
                     /isolate="Pme_1353_1.1"
                     /db_xref="taxon:48701"
                     /chromosome="Unknown"
                     /sex="female"
                     /dev_stage="adult"
     gene            1..1917
                     /gene="clpb"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:106927827"
     CDS             90..1793
                     /gene="clpb"
                     /codon_start=1
                     /product="caseinolytic peptidase B protein homolog isoform
                     X3"
                     /protein_id="XP_014859145.1"
                     /db_xref="GeneID:106927827"
                     /translation="

MPAKQDWPQLVCCQPQQWPSASGKTPITKMILFLRQQEPIMHRMCPGLGYLSTCGRWCRLIKEGVDPNHRHRLGWTALMVAAMNRQHSAVKALLEAGADPNAGDDFNNVYDTSREKGIHSLEVLVSREDEFSSRLSSRAGFRGCTSLHYATLADDPLAVRLLLEAGANPLQTNSLGHTARAYAKEGEVNTVLQEWEGKFKELQARREAEERRRFPLERRLKEHIIGQEGAINTVASAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQVARYMHKDIKKGFIRMDMSEFQEKHEVAKFIGSPPGYVGHEEGGQLTKLLKACPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIECKDAIFIMTSNVASEDIAQHALQLRQEAEEVSRRKLADKLEDVEKSDDIKISRQFKETVIQPILKAHFRRDEFLGRINEIVYFLPFCYSELLQLVSKELNFWAKKAKQRHDITLQWDHLVLDLLAGGYNLHYGARSIKHEVERRVVNQLAAAYEQELLPKGCTLRLSVQSEGQEEHSMPRLRLEVVGEDSSSRTLDIRPPLNPEH"

     misc_feature    <267..>644
                     /gene="clpb"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     Region: ANKYR; COG0666"
                     /db_xref="CDD:440430"
     misc_feature    306..401
                     /gene="clpb"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    405..590
                     /gene="clpb"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    <735..1691
                     /gene="clpb"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; Region: ClpA; COG0542"
                     /db_xref="CDD:440308"
ORIGIN      

ggctctggccagtagagggcgccaaaataaccagtattgggaggacagcaggcagagtggtgggagtgagagccggggtacaggtggggatgccagccaagcaggactggcctcagctggtgtgctgtcagccgcagcagtggccttctgcctcaggaaagactccgataacaaagatgattctcttcttgaggcagcaagaaccaataatgcacaggatgtgtccaggcttgggttacctgtccacatgtggcagatggtgtaggctaataaaagaaggcgtggatccaaatcatcgtcaccggctgggatggaccgctctcatggtggctgcaatgaacagacagcacagtgctgtgaaagctcttcttgaagccggagccgacccgaacgccggagacgacttcaacaacgtttatgacacctcaagggagaaaggcatccactctctggaagtgctggtatccagagaggatgaattcagcagcaggctcagcagcagggctggtttccgtggctgcacctcgctgcactacgccacactggctgatgacccactcgctgtccgcttgctgctggaggctggtgccaacccgctgcaaaccaatagtttgggacacacggcccgggcttatgcgaaggagggagaagtcaacacagttctgcaggagtgggagggcaagtttaaggagctgcaagcgcgccgagaggcagaggaaaggagaaggttccccctggagaggaggctgaaggagcacatcatcggtcaggaaggggccatcaataccgtggcttcagccatcagaagaaaggagaatggctggtatgatgaagagcatcctctcgtcttcctctttcttggctcatcaggaatcggaaagacggagttggcaaaacaggttgctcgctacatgcacaaagacattaagaagggtttcatccgcatggacatgtcggagttccaggaaaaacatgaggttgcaaaattcattggttctcctccaggatacgttgggcatgaggaagggggtcagctgaccaagttgttgaaggcatgccccaacgctgttgttctgtttgatgaagtggataaagctcatcctgacgtccttaccatcatgctgcagctgtttgatgagggacgtctcacagacggcaaaggaaagactattgagtgtaaggacgccattttcatcatgacttcaaatgttgccagtgaagacattgcccagcatgctttgcaactgcggcaggaagctgaggaggtcagtcgcaggaagctggccgacaaactcgaggatgttgagaaaagcgacgacattaaaatctcccggcagtttaaagaaacggtcatccaaccaatcctgaaggctcatttccggagggacgagtttcttggtcggatcaatgaaatcgtgtacttcctgccgttttgttactcagagctgctgcagctggtcagcaaagagctcaacttctgggccaaaaaggctaagcagcgccatgacatcactcttcagtgggatcacctggtcctggacctactggccggtggatataacctgcactatggagcgcgttccatcaaacatgaggttgagcgacgggtcgtcaaccaattagctgcagcgtacgaacaggagctgctgcccaagggctgcacgctgcgtctgtctgtccaatcagaaggccaggaggagcacagcatgcccaggctgcgcctggaggtggtgggagaggacagttcatcgagaacactggacatccgcccaccgctgaatcctgaacactaatacaagacaacactaaacctcatcatcatcatcagcagcagcagcagtcgaagcattatccagcataaagaggatggatggtaaccaatggatgttcttaataaaagcacatctgagaaacttc

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