2024-11-15 19:27:00, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_014658111 2601 bp mRNA linear PLN 12-OCT-2017 DEFINITION PREDICTED: Vigna radiata var. radiata protein NETWORKED 4B (LOC106772009), mRNA. ACCESSION XM_014658111 VERSION XM_014658111.2 DBLINK BioProject: PRJNA301363 KEYWORDS RefSeq. SOURCE Vigna radiata var. radiata (mung bean) ORGANISM Vigna radiata var. radiata Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_028358.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 12, 2017 this sequence version replaced XM_014658111.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Vigna radiata Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2601 /organism="Vigna radiata var. radiata" /mol_type="mRNA" /variety="radiata" /cultivar="VC1973A" /db_xref="taxon:3916" /chromosome="8" /tissue_type="leaf" gene 1..2601 /gene="LOC106772009" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:106772009" CDS 694..2427 /gene="LOC106772009" /codon_start=1 /product="protein NETWORKED 4B" /protein_id="XP_014513597.1" /db_xref="GeneID:106772009" /translation="
MMKNQPSQWWWLESHSNTRRSPWLQSTLTELNEKTKAILKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLAERYDQIAGIRQQKTGGSPFSPLKHHQPEKLMSFANDSYDSCSESCDVEESGESEIDDPEPEEEEDSKFDNCAELKEVQFVAANDVMEIERLGEENKDHKDQNKQKYNIYEVVMLREEIEQLRKENRVQKDELNRKSITFDELMMLREEIEQLRKENRAQKDELYQKDIICGEAMMLREEIEQLGKENRVLKDELSQKSIICGEVMILREEIEQFRKENRAQKHELNQKDIICGEAMMSREEIEQLSKENTVLKDELNQKNIICDEVMMLREEIEQLRKENREQKDELNQKDNICGEIMMLREEIEQLGKENGALKDELNKKYIICGEIMMLREEIEQLRKYNRGQRNELDQKGNKCEVTMLREEIEVYTKENRVKNDELNPEDSVCGEVVMLRKEIERLGKDERAQKGTLSGEVMKLRQENSAQKDHLKQKDQEKIEVIRHLSLAIDMLKQENVKMRSFIAKESANKWKNPFGFKNFMGSLSEQLFNGITKNQPSIVAL"
misc_feature 718..939 /gene="LOC106772009" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature 1141..>2001 /gene="LOC106772009" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 1732..>2298 /gene="LOC106772009" /note="Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]; Region: EnvC; COG4942" /db_xref="CDD:443969" ORIGIN
aaaagttaaataagccattaaaaaaaaaataattactagtcaaacaaattttattgccaccactcaaaatgaaacagccacccaacacagtgtccccacaaactgatctgtcactagaaaatgcgtttattttgaattagtatatagtttgggttcgaccgttgcactaaaatttttgtcttcacatcacgctcctccgattttccatctaagtcacacgccagatactgcttttgccaaatcagaattatcgctaatcaccaatttaaataattaatacatcatttaagcatagttattgcattactgaagcactaatttttctcataatcttcgtgcttttcaatttaaaccttccatagattatggcagcgggatcattgactgaactgtagcattttgaatttgagtgtgtttatatgaattattactatgattggtcggacgaggcaaagggttgattgtgatatgttgagtacacgtgtggtatgatgataggtggagggtttcagatgagacaaatcaagaatttcaaaaccgaaaacaacagtatatataaaatggtcctgttctaatctcttgctcttcgtgaactctaattctaattccatcgcaggcggtggtggcaagcattgcattaattcatgctcttggtgttcgtgataacatagacaactgaggaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacagtaacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatcttaaaactaattgaagaagatgcagattcctttgcccaacgtgctgagatgtattacaagaagagaccacagcttgtgagcatggttgaagacttttataggacacatcgatcattagctgagcggtatgatcaaatcgctggaattcgtcagcagaagactggaggatcacccttttctccactcaagcatcatcaaccagagaagttgatgagttttgcaaatgacagttatgatagctgttctgagagttgtgatgtggaggagtctggggaatctgaaattgatgatcctgagccagaagaggaagaggattctaaattcgataactgtgcagaactgaaggaagttcagtttgtggctgcaaatgatgtgatggaaattgagagacttggtgaagagaacaaggatcataaggatcagaacaagcagaaatataacatttacgaagtagtgatgttgagggaagaaatagagcaactcagaaaagagaacagggttcagaaggatgaactcaaccggaaaagcatcacttttgatgaattaatgatgctgagggaagaaatagagcaactaagaaaagagaatagagcgcagaaggatgaactctaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagagcaactcggtaaagagaatagagttctgaaggatgaactaagccagaaaagtatcatttgtggtgaagtaatgatattgagggaagaaatagagcaatttagaaaagagaatagagcgcagaagcatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgtcgagggaagaaatagaacaactcagtaaagagaatacagttctgaaggatgaactaaaccagaaaaatatcatttgtgatgaagttatgatgttgagggaagaaatagaacaactcagaaaagagaatagagagcagaaggatgaactcaaccagaaagacaacatttgcggtgaaataatgatgttgagggaagaaatagaacaattgggaaaagagaatggagcgctgaaggatgaactcaacaagaaatatatcatttgtggagaaataatgatgttgagggaagaaatagaacaactcaggaaatataatagagggcagaggaatgaactcgaccagaaaggtaacaagtgtgaagtaacgatgttgagggaagaaattgaagtatacacaaaagagaatagagtgaagaatgatgaactaaacccagaagatagcgtttgtggtgaagtagtgatgttaaggaaagaaatagaacgacttggaaaagatgaaagagcacaaaaaggtaccctttctggtgaagtaatgaagttaaggcaagagaatagcgcgcagaaggaccaccttaagcaaaaagaccaagagaaaatagaggtgataagacacctgagtttagctatagatatgctgaagcaggagaacgtaaagatgagaagcttcattgctaaggaatcagccaacaaatggaagaatccatttgggtttaagaatttcatgggatcattatcagagcagttgtttaatggaattacgaagaatcaacctagtattgtagctctctagataaggttcacagagtaaatagctaagttttgtagagcaatattaaaagagacctatgtacatgttatggggacctgctcaagtaacctacagatcttgtatacagcttagtatattcctaactaatccaagaccgagtatctagtggatttcctatacacttgtttttctaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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