2025-04-22 02:18:06, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_014531922 792 bp mRNA linear MAM 04-NOV-2015 DEFINITION PREDICTED: Myotis brandtii alkaline ceramidase 1 (ACER1), transcript variant X2, mRNA. ACCESSION XM_014531922 VERSION XM_014531922.1 DBLINK BioProject: PRJNA218631 KEYWORDS RefSeq. SOURCE Myotis brandtii (Brandt's bat) ORGANISM Myotis brandtii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005371360.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Myotis brandtii Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..792 /organism="Myotis brandtii" /mol_type="mRNA" /db_xref="taxon:109478" /chromosome="Unknown" /sex="male" /geo_loc_name="Russia: Perm poKrai" /lat_lon="58.8348 N 57.6119 E" /collection_date="Dec-2011" /note="collected at hibernation roost" gene 1..792 /gene="ACER1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:102250405" CDS 105..770 /gene="ACER1" /codon_start=1 /product="alkaline ceramidase 1 isoform X2" /protein_id="XP_014387408.1" /db_xref="GeneID:102250405" /translation="
MMFLMHPYAQKRSRSIYALCVLFMVIGLFSMYFHMTLSFLGQLLDEISILWLLAGGYSIWMPRCYFPTFLGENRPQFICLVVIATMVSTFLSFLRPTVNAYALNSIAVHILYIVFQEYKKTSNKELRHLIEVSVVLWAFALTSWISDRFLCSFWQQINFSYMHSIWHLFISITFPYGMVTMALVDARYEMPNQTLKVRYWPRDTWPVGLPYVEITGDHKNC"
misc_feature 114..743 /gene="ACER1" /note="Region: Ceramidase; pfam05875" /db_xref="CDD:461766" ORIGIN
attgactgtaaagatgagctgaaagacttgacaaactctgggttgattcattacctgaaaggggatagttcagcaatgtcaccttcttcatctttgggcctctcatgatgttcctgatgcacccctatgcccagaaacgctcccgctccatttatgccctctgtgtcctcttcatggtcataggcctgttctccatgtacttccacatgacgctcagcttcctgggccaactgctggacgagatctctattctgtggttgctggctggtggctacagcatatggatgccccgctgctactttcccaccttcctaggggaaaacaggccccagtttatctgcctggttgtcatcgccaccatggtcagtaccttcctgtccttcctgaggcctacggtgaacgcatatgccctcaacagcatcgccgtgcatatcctctacatcgtgttccaggagtacaagaagaccagtaataaggagcttcgacatctcattgaggtctccgtggttttgtgggcttttgcattgaccagctggatcagtgaccgcttcctttgcagtttctggcagcagattaatttctcctacatgcacagcatctggcatttgttcatcagcatcaccttcccttatggcatggtcaccatggccttggtggacgccaggtatgagatgccaaaccaaaccctcaaagtccgctactggcctcgggacacgtggcccgtggggctgccctacgtggaaatcactggtgaccacaagaactgctgaagtctgccggtctctggactcc
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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