2024-11-15 19:29:51, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_011658707 648 bp mRNA linear PLN 17-DEC-2019 DEFINITION PREDICTED: Cucumis sativus ripening-related protein grip22 (LOC101211270), mRNA. ACCESSION XM_011658707 VERSION XM_011658707.1 DBLINK BioProject: PRJNA182750 KEYWORDS RefSeq. SOURCE Cucumis sativus (cucumber) ORGANISM Cucumis sativus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_026660.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cucumis sativus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..648 /organism="Cucumis sativus" /mol_type="mRNA" /cultivar="9930" /db_xref="taxon:3659" /chromosome="6" /tissue_type="leaf" gene 1..648 /gene="LOC101211270" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:101211270" CDS 1..648 /gene="LOC101211270" /codon_start=1 /product="ripening-related protein grip22" /protein_id="XP_011657009.1" /db_xref="GeneID:101211270" /translation="
MAKLACLVSFFFLVLSLLGLSQAISSCREPCQTLKNCKGQLICINGQCNDDPDVGTRICSTDSDNGADGEKFRCEAFGRLHCKGKSFPQFKCSPRVTSSTRAILTNNDFSKGGDGGDPSECDGKFHHNSQPIVALSTGWYNGGSRCGKKIRITARNGRSVLAKVVDECDTINGCDKAHAHQPPCRNNIVDGSNGVWHALGLDINVGEEPVVWSDA"
misc_feature 259..642 /gene="LOC101211270" /note="double-psi beta-barrel fold of the kiwellin family; Region: DPBB_kiwellin-like; cd22270" /db_xref="CDD:439250" misc_feature order(265..267,271..273,352..369,427..432,436..438, 496..501,505..507) /gene="LOC101211270" /note="putative effector binding site [polypeptide binding]; other site" /db_xref="CDD:439250" ORIGIN
atggcaaaattggcttgcttggtctcttttttctttttggttctttctcttttgggcctttctcaagcaatctcttcttgcagggagccatgtcaaaccttgaaaaattgtaaaggtcaattgatttgtataaatggccaatgtaatgatgatcccgatgttggaactcgcatttgttcaaccgacagtgataacggagcagatggagaaaaatttcgttgtgaggcatttggaagattacattgcaaaggcaaatcgttcccccaattcaaatgctcgcctcgagtgacttcctcaactcgagctatcctaacaaataatgactttagtaaaggtggggatggaggagacccgtctgagtgtgatggaaagttccatcataactctcaaccaatagtggcattgtccacgggttggtacaacgggggatctagatgtggaaagaaaattagaattacagcgagaaatggacggtcggttttggctaaggtggtggacgagtgtgatacaattaatggatgcgataaggcacatgctcaccaaccaccgtgtcgaaacaatatcgtggatggttctaatggagtgtggcatgctttagggcttgatataaatgttggtgaagaacctgtcgtctggtcagatgcttga
//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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