2024-11-15 16:48:44, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_002419188 4122 bp mRNA linear PLN 28-AUG-2017 DEFINITION Candida dubliniensis CD36 cell surface flocculin, putative (CD36_83030), partial mRNA. ACCESSION XM_002419188 VERSION XM_002419188.1 DBLINK BioProject: PRJNA38659 BioSample: SAMEA2272258 KEYWORDS RefSeq. SOURCE Candida dubliniensis CD36 ORGANISM Candida dubliniensis CD36 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 AUTHORS Jackson,A.P., Gamble,J.A., Yeomans,T., Moran,G.P., Saunders,D., Harris,D., Aslett,M., Barrell,J.F., Butler,G., Citiulo,F., Coleman,D.C., de Groot,P.W., Goodwin,T.J., Quail,M.A., McQuillan,J., Munro,C.A., Pain,A., Poulter,R.T., Rajandream,M.A., Renauld,H., Spiering,M.J., Tivey,A., Gow,N.A., Barrell,B., Sullivan,D.J. and Berriman,M. TITLE Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans JOURNAL Genome Res. 19 (12), 2231-2244 (2009) PUBMED 19745113 REFERENCE 2 (bases 1 to 4122) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4122) AUTHORS Gamble,J.A. TITLE Direct Submission JOURNAL Submitted (19-JAN-2009) Gamble J.A., Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_012862). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..4122 /organism="Candida dubliniensis CD36" /mol_type="mRNA" /strain="CD36" /type_material="type material of Candida dubliniensis" /db_xref="taxon:573826" /chromosome="3" gene <1..>4122 /locus_tag="CD36_83030" /db_xref="GeneID:8046715" CDS 1..4122 /locus_tag="CD36_83030" /inference="similar to AA sequence:UniProt:Q1H8S8" /inference="similar to AA sequence:UniProt:Q4FX61" /inference="similar to AA sequence:UniProt:Q5AEG7" /note="proteophosphoglycan, putative; repetitive cell surface protein, putative" /codon_start=1 /transl_table=12 /product="cell surface flocculin, putative" /protein_id="XP_002419233.1" /db_xref="GeneID:8046715" /db_xref="UniProtKB/TrEMBL:B9WDR6" /translation="
MKLESIAALAGIVSTALAGVYPKNPPPATTYWTTVYAPSTSVVTVTSCSKGGCGTQSYATGVTKTKTVHQGVTTEFTTYCPLTTSHEVIKSTYSDTLVVWSTRSFSWVWSFSKPPGCGQSTSTIKSTAQTNVPTTATPTATPSIATTCTTGTKTKWWWWVVQTTDCSVYSVSSTSSSLITTSQATTTSSIASTTITSAPATPSAVTTCSTGTKTKWWWWVVKTTDCSVYTVSSTSSSLISTSQATTTSSIASTTGSTPATTPGTSIKSTPTTAPGTSTKSTPATTPGTNTKSTPATTPGSSVTTGKTSTDWITSYTTHTAETTTVITVTDCNHRTCTPTVVTTGVTVVTVTTTGTVTQYTTFCPLTSTETVVTSTKPTPTTTPKSSTSIASTPATTPTTSSKSTPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGSSTSIASTPATTPGSSVTTGKTSTDWITSFTTHTAETTTVITVTDCNHRTCTPTVVTTGVTVVTVTTTGTVTQYTTFCPLTSTETIVTSESTPATTPGSSSATTPGTSSATTPGSSSATTPGSSSATTPGTSSATTPGSSSATTPGSSSATTPGTSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGTSSATTPGSSSATTPGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSASTPGSSSATTQGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSATTPGTSSATTPESSSIESTPATTPTGPATTSVPEQSTVTITGPGFTTVFTLTPGTNTITTPTGPATTSGSTPGSSSASTPGSSSATTPGSSSATTPGTSSATTPGSSSASTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGSSSASTPGSSSATTQGSSSATTPGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGTSSATTPGSSSATTPESSSSIASTPGTTPGSSSAATTPGTSTGSCWTSVSTGGYGDKTTVTICSDVTSGQSVTTPTTISVPSSYCTTVPTAGTDETIITSFVTSTAHSTEVITVTSCAETGCETHTTHTGVVVVTVTTTDVATTYTTYCPLTTTKAVYHVAKLANYKRDQTEIVATETNENTSNWPAPTLVPSVGISNNSSSGVSTFEGAANSVVPRLGLIAGFFSALLFLF"
misc_feature 118..249 /locus_tag="CD36_83030" /note="Flocculin type 3 repeat; Region: Flocculin_t3; pfam13928" /db_xref="CDD:464047" misc_feature <1048..3669 /locus_tag="CD36_83030" /note="Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport]; Region: FhaB; COG3210" /db_xref="CDD:442443" ORIGIN
atgaaattggaatcaattgctgcccttgctggtattgtttccactgcccttgctggtgtgtaccctaaaaatccaccaccagcaactacgtattggacaacagtctacgctccttcaacttctgtcgttaccgtcacttcttgctccaaaggtggatgtggcactcaatcctatgctactggtgtcactaaaaccaaaactgtccatcaaggtgtgactactgaatttactacttactgtccattgactacatcccatgaagttattaaatccacttattcggatacacttgtcgtttggtcgaccagatccttctcttgggtttggtcattctcaaaaccaccaggatgtggccaaagcacttctactattaaatccactgctcaaaccaatgtcccaactactgctactcctactgctactccatccattgctactacttgcaccactggaaccaaaactaaatggtggtggtgggttgtacaaactactgattgctcggtttacagtgtttcttctacatcatcttcacttattactaccagccaagctaccactactagcagtattgcttctactactataactagtgcaccagcaacaccatctgcggttactacttgctccactggaaccaaaaccaaatggtggtggtgggttgtgaaaaccacagattgctcggtttacactgtttcgtcaacatcgtcttcccttatttctactagtcaagctactactactagcagtattgcatcaactactgggtctactccagctaccacaccaggcactagcatcaagagtaccccaactactgctccaggtaccagtactaagagtactccagctaccactccaggtaccaacaccaaatcaaccccagctaccacacctggatcatctgttactactggtaaaacaagtactgattggatcacttcatataccacccacactgctgagactacaactgtcattactgttactgactgtaatcaccgcacttgtacaccaactgttgttactactggtgtcaccgttgttacagttactactacaggtacagtcactcaatacactactttctgtccattaacttctactgaaaccgttgtgacaagtactaaacctactccaactaccacaccaaagtcatcaactagtattgcatcaactccggctactactccaacaaccagttccaagtctactccaggcactagcaccaaatctactccaactactgctccaggcactagcaccaagagtaccccaactactgctccaggaaccagtactaaatcaactccaactactgctccaggaaccagcaccaaatctactccaactactgctccaggcactagcaccaagagtaccccaactactgctccaggaacaagtactaagagtaccccaactaccgctccaggtaccagtactaaatctaccccaactactgccccaggaacaagtactaagagtaccccaactactgctccaggaacaagtactaaatctaccccaactactgctccaggaaccagtactaaatcaactccaactactgctccaggaacaagtactaaatctaccccaactactgccccaggcactagcaccaagagtaccccaactactgctccaggtaccagtactaaatctaccccaactactgccccaggaacaagtactaagagtaccccaactaccgctccaggatcttcaactagtattgcatcaactccagctaccacacctggatcatctgttactactggtaaaacaagtaccgactggattacgtcatttacaactcacactgctgagactacaactgtcattactgttactgactgtaatcaccgcacttgtacaccaactgttgttactactggtgtcaccgttgttacagttactactacaggtacagtcactcaatacactactttctgtccattgacttcaactgaaactattgttactagtgaatcaactccagctactaccccaggttctagttctgctaccacaccaggaactagctctgctaccacaccaggttctagttctgctactactccaggatccagctctgctaccacaccaggtactagctctgctaccacaccaggttctagttctgctactactccaggatccagctctgctaccacaccaggtactagctctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttctagctctgctactacaccaggttctagttctgcctccacaccaggtactagttctgctactacaccaggatccagctctgctaccacaccaggttctagttctgctactactccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacccaaggatccagctctgctacaaccccaggttctagttctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttctagctctgctactacaccaggttctagttctgcctccacaccaggttctagctctgccactaccccaggatccagctctgctactaccccaggttctagttctgctaccacaccaggtactagctctgctaccacaccagaatcatctagcattgagtctactccagctactacaccaactggtccagctaccacttcagttccagaacaatctactgtcaccataactggtccaggctttactactgttttcacattaacaccaggtactaatactatcactacaccaactggcccagctaccacttcaggatccacaccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttccagctctgctactacaccaggtactagctctgctactacaccaggttctagttctgcctccacaccaggttctagttctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttctagctctgctactacaccaggttctagttctgcctccacaccaggttctagttctgcctccacaccaggttctagttctgctactacccaaggatccagctctgctacaaccccaggttctagttctgctactaccccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggttctagctctgccactaccccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggtactagctctgctactaccccaggatccagctctgctaccacaccagaatcatcttccagtattgcatctaccccaggtactactccaggttctagttcagctgctactactccaggtacaagcacaggatcatgctggacttctgtttctactggaggatatggtgataaaactacagtgactatttgttctgatgttacttctggacaaagtgtgaccactccaactactatttcagttccatcttcatactgcaccactgttcctactgctggtactgatgaaacaattataacttcgtttgtcacttcaactgcacattcaactgaagttattactgttactagctgtgctgaaactggatgcgagactcacactacacatactggtgttgtcgttgtcacagtgaccaccaccgatgtggctaccacttacacaacctactgtccattgactacaactaaggctgtttaccatgttgctaaacttgcaaactacaagagagatcaaactgaaattgttgctactgaaaccaacgagaacaccagcaactggccagcaccaactttagttccatctgttggcatttctaacaacagttcctcaggtgtcagcacttttgaaggtgcagctaactcagttgttccaagattaggtctcattgctggtttcttcagcgcattgttattcttgttttaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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