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2024-11-15 16:48:44, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_002419188            4122 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Candida dubliniensis CD36 cell surface flocculin, putative
            (CD36_83030), partial mRNA.
ACCESSION   XM_002419188
VERSION     XM_002419188.1
DBLINK      BioProject: PRJNA38659
            BioSample: SAMEA2272258
KEYWORDS    RefSeq.
SOURCE      Candida dubliniensis CD36
  ORGANISM  Candida dubliniensis CD36
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade;
            Candida.
REFERENCE   1
  AUTHORS   Jackson,A.P., Gamble,J.A., Yeomans,T., Moran,G.P., Saunders,D.,
            Harris,D., Aslett,M., Barrell,J.F., Butler,G., Citiulo,F.,
            Coleman,D.C., de Groot,P.W., Goodwin,T.J., Quail,M.A.,
            McQuillan,J., Munro,C.A., Pain,A., Poulter,R.T., Rajandream,M.A.,
            Renauld,H., Spiering,M.J., Tivey,A., Gow,N.A., Barrell,B.,
            Sullivan,D.J. and Berriman,M.
  TITLE     Comparative genomics of the fungal pathogens Candida dubliniensis
            and Candida albicans
  JOURNAL   Genome Res. 19 (12), 2231-2244 (2009)
   PUBMED   19745113
REFERENCE   2  (bases 1 to 4122)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4122)
  AUTHORS   Gamble,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2009) Gamble J.A., Pathogen Sequencing Unit,
            Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_012862).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..4122
                     /organism="Candida dubliniensis CD36"
                     /mol_type="mRNA"
                     /strain="CD36"
                     /type_material="type material of Candida dubliniensis"
                     /db_xref="taxon:573826"
                     /chromosome="3"
     gene            <1..>4122
                     /locus_tag="CD36_83030"
                     /db_xref="GeneID:8046715"
     CDS             1..4122
                     /locus_tag="CD36_83030"
                     /inference="similar to AA sequence:UniProt:Q1H8S8"
                     /inference="similar to AA sequence:UniProt:Q4FX61"
                     /inference="similar to AA sequence:UniProt:Q5AEG7"
                     /note="proteophosphoglycan, putative; repetitive cell
                     surface protein, putative"
                     /codon_start=1
                     /transl_table=12
                     /product="cell surface flocculin, putative"
                     /protein_id="XP_002419233.1"
                     /db_xref="GeneID:8046715"
                     /db_xref="UniProtKB/TrEMBL:B9WDR6"
                     /translation="
MKLESIAALAGIVSTALAGVYPKNPPPATTYWTTVYAPSTSVVTVTSCSKGGCGTQSYATGVTKTKTVHQGVTTEFTTYCPLTTSHEVIKSTYSDTLVVWSTRSFSWVWSFSKPPGCGQSTSTIKSTAQTNVPTTATPTATPSIATTCTTGTKTKWWWWVVQTTDCSVYSVSSTSSSLITTSQATTTSSIASTTITSAPATPSAVTTCSTGTKTKWWWWVVKTTDCSVYTVSSTSSSLISTSQATTTSSIASTTGSTPATTPGTSIKSTPTTAPGTSTKSTPATTPGTNTKSTPATTPGSSVTTGKTSTDWITSYTTHTAETTTVITVTDCNHRTCTPTVVTTGVTVVTVTTTGTVTQYTTFCPLTSTETVVTSTKPTPTTTPKSSTSIASTPATTPTTSSKSTPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGTSTKSTPTTAPGSSTSIASTPATTPGSSVTTGKTSTDWITSFTTHTAETTTVITVTDCNHRTCTPTVVTTGVTVVTVTTTGTVTQYTTFCPLTSTETIVTSESTPATTPGSSSATTPGTSSATTPGSSSATTPGSSSATTPGTSSATTPGSSSATTPGSSSATTPGTSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGTSSATTPGSSSATTPGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSASTPGSSSATTQGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSATTPGTSSATTPESSSIESTPATTPTGPATTSVPEQSTVTITGPGFTTVFTLTPGTNTITTPTGPATTSGSTPGSSSASTPGSSSATTPGSSSATTPGTSSATTPGSSSASTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGSSSASTPGSSSATTQGSSSATTPGSSSATTPGSSSATTPGSSSASTPGSSSATTPGSSSATTPGSSSASTPGTSSATTPGSSSATTPESSSSIASTPGTTPGSSSAATTPGTSTGSCWTSVSTGGYGDKTTVTICSDVTSGQSVTTPTTISVPSSYCTTVPTAGTDETIITSFVTSTAHSTEVITVTSCAETGCETHTTHTGVVVVTVTTTDVATTYTTYCPLTTTKAVYHVAKLANYKRDQTEIVATETNENTSNWPAPTLVPSVGISNNSSSGVSTFEGAANSVVPRLGLIAGFFSALLFLF"
     misc_feature    118..249
                     /locus_tag="CD36_83030"
                     /note="Flocculin type 3 repeat; Region: Flocculin_t3;
                     pfam13928"
                     /db_xref="CDD:464047"
     misc_feature    <1048..3669
                     /locus_tag="CD36_83030"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; Region: FhaB; COG3210"
                     /db_xref="CDD:442443"
ORIGIN      
atgaaattggaatcaattgctgcccttgctggtattgtttccactgcccttgctggtgtgtaccctaaaaatccaccaccagcaactacgtattggacaacagtctacgctccttcaacttctgtcgttaccgtcacttcttgctccaaaggtggatgtggcactcaatcctatgctactggtgtcactaaaaccaaaactgtccatcaaggtgtgactactgaatttactacttactgtccattgactacatcccatgaagttattaaatccacttattcggatacacttgtcgtttggtcgaccagatccttctcttgggtttggtcattctcaaaaccaccaggatgtggccaaagcacttctactattaaatccactgctcaaaccaatgtcccaactactgctactcctactgctactccatccattgctactacttgcaccactggaaccaaaactaaatggtggtggtgggttgtacaaactactgattgctcggtttacagtgtttcttctacatcatcttcacttattactaccagccaagctaccactactagcagtattgcttctactactataactagtgcaccagcaacaccatctgcggttactacttgctccactggaaccaaaaccaaatggtggtggtgggttgtgaaaaccacagattgctcggtttacactgtttcgtcaacatcgtcttcccttatttctactagtcaagctactactactagcagtattgcatcaactactgggtctactccagctaccacaccaggcactagcatcaagagtaccccaactactgctccaggtaccagtactaagagtactccagctaccactccaggtaccaacaccaaatcaaccccagctaccacacctggatcatctgttactactggtaaaacaagtactgattggatcacttcatataccacccacactgctgagactacaactgtcattactgttactgactgtaatcaccgcacttgtacaccaactgttgttactactggtgtcaccgttgttacagttactactacaggtacagtcactcaatacactactttctgtccattaacttctactgaaaccgttgtgacaagtactaaacctactccaactaccacaccaaagtcatcaactagtattgcatcaactccggctactactccaacaaccagttccaagtctactccaggcactagcaccaaatctactccaactactgctccaggcactagcaccaagagtaccccaactactgctccaggaaccagtactaaatcaactccaactactgctccaggaaccagcaccaaatctactccaactactgctccaggcactagcaccaagagtaccccaactactgctccaggaacaagtactaagagtaccccaactaccgctccaggtaccagtactaaatctaccccaactactgccccaggaacaagtactaagagtaccccaactactgctccaggaacaagtactaaatctaccccaactactgctccaggaaccagtactaaatcaactccaactactgctccaggaacaagtactaaatctaccccaactactgccccaggcactagcaccaagagtaccccaactactgctccaggtaccagtactaaatctaccccaactactgccccaggaacaagtactaagagtaccccaactaccgctccaggatcttcaactagtattgcatcaactccagctaccacacctggatcatctgttactactggtaaaacaagtaccgactggattacgtcatttacaactcacactgctgagactacaactgtcattactgttactgactgtaatcaccgcacttgtacaccaactgttgttactactggtgtcaccgttgttacagttactactacaggtacagtcactcaatacactactttctgtccattgacttcaactgaaactattgttactagtgaatcaactccagctactaccccaggttctagttctgctaccacaccaggaactagctctgctaccacaccaggttctagttctgctactactccaggatccagctctgctaccacaccaggtactagctctgctaccacaccaggttctagttctgctactactccaggatccagctctgctaccacaccaggtactagctctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttctagctctgctactacaccaggttctagttctgcctccacaccaggtactagttctgctactacaccaggatccagctctgctaccacaccaggttctagttctgctactactccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacccaaggatccagctctgctacaaccccaggttctagttctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttctagctctgctactacaccaggttctagttctgcctccacaccaggttctagctctgccactaccccaggatccagctctgctactaccccaggttctagttctgctaccacaccaggtactagctctgctaccacaccagaatcatctagcattgagtctactccagctactacaccaactggtccagctaccacttcagttccagaacaatctactgtcaccataactggtccaggctttactactgttttcacattaacaccaggtactaatactatcactacaccaactggcccagctaccacttcaggatccacaccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttccagctctgctactacaccaggtactagctctgctactacaccaggttctagttctgcctccacaccaggttctagttctgctactaccccaggttctagttctgcctccacaccaggttctagttctgctactacaccaggttctagctctgctactacaccaggttctagttctgcctccacaccaggttctagttctgcctccacaccaggttctagttctgctactacccaaggatccagctctgctacaaccccaggttctagttctgctactaccccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggttctagctctgccactaccccaggatccagctctgctactaccccaggttctagttctgcctccacaccaggtactagctctgctactaccccaggatccagctctgctaccacaccagaatcatcttccagtattgcatctaccccaggtactactccaggttctagttcagctgctactactccaggtacaagcacaggatcatgctggacttctgtttctactggaggatatggtgataaaactacagtgactatttgttctgatgttacttctggacaaagtgtgaccactccaactactatttcagttccatcttcatactgcaccactgttcctactgctggtactgatgaaacaattataacttcgtttgtcacttcaactgcacattcaactgaagttattactgttactagctgtgctgaaactggatgcgagactcacactacacatactggtgttgtcgttgtcacagtgaccaccaccgatgtggctaccacttacacaacctactgtccattgactacaactaaggctgtttaccatgttgctaaacttgcaaactacaagagagatcaaactgaaattgttgctactgaaaccaacgagaacaccagcaactggccagcaccaactttagttccatctgttggcatttctaacaacagttcctcaggtgtcagcacttttgaaggtgcagctaactcagttgttccaagattaggtctcattgctggtttcttcagcgcattgttattcttgttttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]