LOCUS       NM_001417850            3302 bp    mRNA    linear   PLN 15-JUL-2024
DEFINITION  Oryza sativa Japonica Group chaperone protein ClpB2,
            chloroplastic-like (LOC4333161), mRNA; nuclear gene for chloroplast
            product.
ACCESSION   NM_001417850 XM_015774943
VERSION     NM_001417850.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3302)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK069123.1.
            
            On Mar 10, 2023 this sequence version replaced XM_015774943.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK069123.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00497392, SAMD00497393
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3302              AK069123.1         2-3303
FEATURES             Location/Qualifiers
     source          1..3302
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..3302
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="chaperone protein ClpB2, chloroplastic-like"
                     /db_xref="GeneID:4333161"
     exon            1..224
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            225..485
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..3173
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="ATP-dependent Clp protease ATP-binding subunit ClpB
                     homolog 2; Casein lytic proteinase B2; LOC_Os03g31300;
                     OSJNBa0020H02.1; OSJNBa0083F15.25"
                     /codon_start=1
                     /product="chaperone protein ClpB2, chloroplastic"
                     /protein_id="NP_001404779.1"
                     /db_xref="GeneID:4333161"
                     /translation="

MAAAPPLAAGLRPAMAAAQAPVVAAAWGVGARRGAALSSSARCRALRLSRGGGGGRDGWVPPPVVGRMPPRTLSVRCAASNGRITQQEFTEMAWQSIVSSPEVAKESKHQIVETEHLMKSLLEQRNGLARRIFSKAGVDNTRLLDATEKFIQRQPKVLGEDPGSMLGRDLEALIQRARDFKKEYGDSFVSVEHLVLGFAEDKRFGRQLFKDFQITVQSLKTAIESIRGKQNVIDQDPEGKYEALDKYGKDLTAMARQGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVQGDVPQALTNRRLIALDMGALIAGAKYRGEFEDRLKAVLKEVTDSDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPSVEDTISILRGLRERYELHHGVRISDSALVAAALLSDRYISGRFLPDKAIDLVDESAAKLKMEITSKPTALDEIDRAVIKLEMERLSLTNDTDKASRDRLSRIEAELSLLKEKQKDLTEQWEREKSVMTKIQSIKEEIDRVNVEIQQAEREYDLNRAAELKYGSLNALQRQLQTTEKELDEYQSSGKSMLREEVTQDDIAEIVSRWTGIPVSKLKQSDREKLLYLEEELHKRVVGQDPAVKAVSEAIQRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAAFMFNTEEAVVRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSIILFDEIEKAHGDVFNVFLQILDDGRVTDSQGRKVSFTNSIIIMTSNVGSQFILNMDEEGGSTDSAYENIKKRVMDAARSVFRPEFMNRIDEYIVFKPLEREQINSIVKLQLARVQKRIADRKIKLEVSPGAVEFLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGDFKDEDSILVDTQVTVPSNGQLPQQKLVFHKMSEESAPAAAEDEKFLPAV"

     transit_peptide 237..464
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="Chloroplast. /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q75GT3.1)"
     mat_peptide     465..3170
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /product="Chaperone protein ClpB2, chloroplastic.
                     /id=PRO_0000412577"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75GT3.1)"
     misc_feature    501..3053
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="ATP-dependent chaperone ClpB; Region:
                     chaperone_ClpB; TIGR03346"
                     /db_xref="CDD:274529"
     misc_feature    501..698
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75GT3.1);
                     Region: Repeat 1.
                     /evidence=ECO:0000255|PROSITE-ProRule:PRU01251"
     misc_feature    732..923
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75GT3.1);
                     Region: Repeat 2.
                     /evidence=ECO:0000255|PROSITE-ProRule:PRU01251"
     misc_feature    966..1712
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75GT3.1);
                     Region: I. /evidence=ECO:0000250"
     misc_feature    2088..2663
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75GT3.1);
                     Region: II. /evidence=ECO:0000250"
     exon            486..704
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            705..942
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1138
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1193
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1344
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1653
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1919
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..2846
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
     exon            2847..3302
                     /gene="LOC4333161"
                     /gene_synonym="CLPB-C; CLPB2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcatccatccacgccctcctcgttcccccctgaacctcccagaagctccctctcctccccgccgccgcgacgcccaccgccacctatttatacccgcaccccgcctcgccacctcaccgttctatcctcgcgctcgcctccgctccaatcccaatctccgatctcccgccgccgccgctgaagaactgaacaatctacttctagtatctcaagagaattctgagatcaagcctgccatggccgcagcgccgccgctcgccgcggggctccggcccgccatggcggcggcacaggcgccggtcgtcgccgcggcgtggggcgtgggcgctaggaggggggcggccttgtcgtcgtcggctcggtgtagggcgcttcggttgtcgagaggaggaggaggagggcgagatgggtgggtgcctcctcccgtggtggggaggatgccgccgcggacgctctccgtcaggtgcgccgccagcaatgggaggattacacaacaagagttcactgagatggcatggcaatcgattgtttcgtcgcctgaagtagcgaaagagagtaaacaccagattgtggagactgaacatctgatgaaatcattgctggagcaaaggaatgggctcgcccgtcgaatcttttctaaagctggagttgataatacaaggcttcttgatgccacagagaagttcatccagcggcagcctaaggtgttgggtgaagatcctggttccatgttgggacgtgacttggaagctctgatacaaagagcacgagactttaaaaaagagtatggtgattcatttgtttcggttgagcatctggtccttggttttgcggaggataaacgatttggaagacagctgttcaaggatttccagattaccgtacagtccttgaaaactgccattgaatcaataagagggaaacaaaatgtgattgatcaagatcctgagggaaaatatgaagctttggacaagtatggcaaggacctcacagccatggcacgtcaggggaaacttgacccggttataggaagagatgatgaaattcgtagatgcattcaaattttatctcggagaacaaagaataatccagttttgattggtgaacctggtgtggggaaaactgctatagctgaagggcttgctcagaggatagtgcaaggagatgttccgcaagctctaacaaaccgcagactaattgcacttgacatgggtgctttgattgctggggcaaaatatcgtggggaatttgaggataggctgaaggctgtactcaaggaagtcacagattctgatggacaaaccattcttttcattgatgagattcacactgttgttggagcaggtgcaacaaatggtgccatggacgctggtaatcttctaaaaccgatgcttggtaggggagagctacgttgtatcggtgccacaacccttgacgagtaccgcaaatatattgagaaggatcctgcattggagcgtcgcttccaacaagtttatgttgatcaaccttcagttgaagatacaatctcaatactccgtggattacgggagagatatgaattgcaccatggggtacgcatatcagacagtgcacttgtggcagcagctcttctctcagaccgttacattagtggacgatttctgccggacaaagcaattgatttggttgatgagtcagctgccaaattgaaaatggagataacttccaagccaactgctctagatgagattgatcgtgctgtaataaagcttgaaatggaacgtctctcactaacaaacgatacagacaaagcatcaagggacagactatctcgaattgaagcagaactgtcactattgaaagaaaagcagaaggacctgactgagcagtgggagcgtgagaagtcggtgatgactaagattcaatctattaaagaagagattgatagggtcaatgtggagatccagcaggccgaacgtgagtatgatctcaatcgtgctgctgaactgaagtatggcagtctgaacgcattgcagcgccagcttcaaacaacagagaaagagctagatgaatatcaaagttctgggaaatccatgctaagagaagaggtcacccaagatgatattgcagaaatagtgagcaggtggactggtattccagtatctaaactaaagcaatctgatagggagaagttgctgtatctagaggaagaactgcacaagcgtgttgttgggcaggatcctgcagtcaaagcagtttctgaggctattcagagatccagggctggtttgtccgatccaaatcgccccattgccagtttcatgttcatgggccctacaggagttggcaaaacggaactagcaaaagcccttgctgcttttatgttcaacactgaggaagctgttgttaggattgacatgagtgaatacatggagaagcattctgtctcaagactgattggtgcaccaccaggctatgttgggtatgaagagggtggtcagcttacggaagctgttcgtcggaggccatattccattatcttgtttgatgagattgagaaagcccatggagatgtattcaatgttttccttcaaatattggacgatggaagggttactgactcgcagggcaggaaagtgagcttcaccaacagtatcattatcatgacatccaatgttggttcacagttcatactaaacatggatgaagaaggtgggtcaactgattcagcctatgagaatataaagaagagggtgatggatgctgcaagatctgttttccgtccggagttcatgaatcggattgatgagtacattgtcttcaagccacttgagagggaacagatcaacagcattgtcaaattacagcttgcaagagtacaaaaaagaattgccgatcgcaagatcaaactcgaagtgtcgcctggagcagtcgaattcctgggaagccttggttacgatccgaattacggtgccaggccagtgaagcgagtgattcaacagtatgtggagaacgagctggcgaagggtatcctgagaggtgatttcaaggacgaggacagcatcctggtagacacccaggtcaccgtgccatctaatggtcagctccctcagcaaaagctcgttttccacaaaatgagtgaagaatccgcaccagctgctgctgaagacgagaaatttttgccggctgtttgatgggccgaacttttagcagatgaggaataaaatgtagatagaagattagcaaacttgagtggatagcatagtatacagacacaatttcccttgctagttcaacattacataagcacaaagtctgtgctg

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