LOCUS       NM_001247214            3190 bp    mRNA    linear   PLN 03-NOV-2024
DEFINITION  Solanum lycopersicum heat shock protein (hsp100/ClpB), mRNA.
ACCESSION   NM_001247214
VERSION     NM_001247214.2
KEYWORDS    RefSeq.
SOURCE      Solanum lycopersicum (Lycopersicon esculentum)
  ORGANISM  Solanum lycopersicum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon.
REFERENCE   1  (bases 1 to 3190)
  AUTHORS   Yang JY, Sun Y, Sun AQ, Yi SY, Qin J, Li MH and Liu J.
  TITLE     The involvement of chloroplast HSP100/ClpB in the acquired
            thermotolerance in tomato
  JOURNAL   Plant Mol. Biol. 62 (3), 385-395 (2006)
   PUBMED   16912911
REFERENCE   2  (bases 1 to 3190)
  AUTHORS   Yamamoto N, Tsugane T, Watanabe M, Yano K, Maeda F, Kuwata C, Torki
            M, Ban Y, Nishimura S and Shibata D.
  TITLE     Expressed sequence tags from the laboratory-grown miniature tomato
            (Lycopersicon esculentum) cultivar Micro-Tom and mining for single
            nucleotide polymorphisms and insertions/deletions in tomato
            cultivars
  JOURNAL   Gene 356, 127-134 (2005)
   PUBMED   15975739
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BP908364.1 and AB219939.1.
            
            On Sep 15, 2015 this sequence version replaced NM_001247214.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB219939.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00598192,
                                           SAMD00598193 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                BP908364.1         1-46
            47-475              AB219939.1         1-429
            476-476             BP908364.1         476-476
            477-3190            AB219939.1         431-3144
FEATURES             Location/Qualifiers
     source          1..3190
                     /organism="Solanum lycopersicum"
                     /mol_type="mRNA"
                     /cultivar="Micro-Tom"
                     /db_xref="taxon:4081"
                     /chromosome="2"
                     /map="2"
     gene            1..3190
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /note="heat shock protein"
                     /db_xref="GeneID:778327"
     exon            1..319
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    50..52
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /note="upstream in-frame stop codon"
     CDS             71..3013
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /codon_start=1
                     /product="heat shock protein"
                     /protein_id="NP_001234143.2"
                     /db_xref="GeneID:778327"
                     /translation="

MSTVTSFSGVQFCVPSSSSNSSNRVALFSSHSAPYLNFSGKSRVLGKCSSLKLKRKDVFFSRKTEKLSQGSRLTVRCDASNGRITQQDFTEMAWQAIVASPEIAKENKHQIVETEHLMKALLEQKNGLARRIFSKTGVDNTRLLEATDKFIRQQPKVIGETAGSMLGRELEGLMQRAREYKKEYGDSFVSVEHLVLGFIQDKRFGKQLFNDFQISLKTLKTAIESIRGRQNVIDQDPEGKYESLEKYGKDLTAMARAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTVSILRGLRERYELHHGVRISDTALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRAVLKLEMERLSLTNDTDKASKDRLNRLETELSLLKERQAELTEQWEHEKSVMTRLQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNTLQRQLEASEKELSDYMKSGKSMLREEVTGNDVAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVRAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALANYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDNDDDSSKEATYQTIKQRVMDAARAVFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLERVQQRLADRKMKIQVSEAAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVSAFSNGQLPQQKLVFKRQESGSDSPAENQEAFSQKL"

     misc_feature    335..2899
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /note="ATP-dependent chaperone ClpB; Region:
                     chaperone_ClpB; TIGR03346"
                     /db_xref="CDD:274529"
     exon            320..538
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            539..776
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            777..972
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1027
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1178
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1487
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1753
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..2686
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
     exon            2687..3190
                     /gene="hsp100/ClpB"
                     /gene_synonym="Lehsp100/ClpB"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaaactttgtcgtttttcttccttcttcaataacgttgagataacagaatagtacatttggttcaccggtatgtctaccgtgacgtcattttccggcgtacagttttgcgttccttcttcttcttccaattcttcaaacagagttgctttattttcatcccattcagcgccgtacctgaacttctcaggcaaatcgcgagttcttggcaagtgtagttcgttgaaactgaagaggaaggatgtgttcttcagtaggaaaactgagaaactttctcagggctcaaggcttaccgtacgttgtgatgcttcaaatggaaggatcactcagcaagattttacagaaatggcatggcaagcaattgttgcatcgccagaaatagctaaagagaacaagcatcaaatagtagagactgagcacttgatgaaggcactgttggagcaaaagaatgggctggctcgtcgcatattctccaagacgggtgtagataatacccgccttttagaggctactgataagtttattagacaacaaccaaaggttattggtgagacagcaggttctatgttaggccgagagttggaaggtctgatgcagagagccagggagtacaagaaagagtatggtgattcctttgtgtcagttgagcatttggtgcttggcttcattcaagataaacgatttgggaagcaactgtttaatgatttccagatttccctgaagacactgaaaactgccattgaatccataaggggacgccaaaatgttattgatcaagatcctgaagggaagtatgaatcactagaaaaatatggaaaagacctgactgctatggctagagcggggaagcttgacccagttataggaagagatgatgagatacgtagatgcatacaaatcctctcaaggagaacaaagaataacccagtgttaattggtgagcctggagttgggaaaactgcaatctctgaagggcttgctcagagaattgtgcaaggagatgtacctcaggctttgatgaatcgaaggttgatatctcttgatatgggtgcgctcatagctggtgcaaaatatcgtggtgaatttgaagacagattgaaggcagtgcttaaggaagtgacagaatctgaaggacagatcatcctttttattgatgagatacatactgttgttggtgcaggtgctactaatggtgcaatggatgctgggaatctattgaagccgatgcttggtcgaggagaactacgatgtattggtgcgaccaccttggatgaataccgtaaatatattgagaaagatcctgccctggagcgtcgtttccagcaagtttatgttgaccagcctacagttgaagacactgtctccatacttcgcggattacgtgaaagatatgagctgcatcacggggttcgcatttcagacactgcgcttgtcgacgcagctattctttcggaccgttatattagtggacgttttctacctgacaaagctattgacctagttgatgaagctgctgcaaaactgaaaatggagatcacctcaaaacctacagcccttgacgagatcaatcgtgcagttttgaagttggagatggagaggctatctctaactaatgatacagataaagcatcgaaagaccggttaaaccgtcttgagactgaattgtctcttctgaaggagaggcaagctgagctgactgagcagtgggagcatgaaaagagtgtgatgactcgcttgcagtccattaaggaagagatcgaccgggtaaatcttgagatccagcaagcagagcgggaatatgatcttaatcgtgctgctgaacttaagtatgggagtctaaacaccttgcagcgtcaacttgaagcttcagaaaaagaactgagtgattatatgaagtctggaaaatcgatgctcagagaagaagtaactgggaatgatgttgcagagattgttagtaagtggactgggattcctgtttctaagctacaacagtcggagagggaaaagctgttgcatttagaggaagagttgcacaaacgtgttgttggtcaagatccagcagtaagagcagtagcagaggcaatccagcgctcgcgtgctggactttcagatcctcatcgtcctattgcaagctttatgttcatgggtcccactggagttggaaagacggagttagctaaggcccttgctaactatttgttcaatactgaagaggcacttgtgcgcatcgatatgagtgaatacatggagaagcatgcagtttcaagattgataggagctccccctggttatgtcgggtatgaagaaggggggcagttgacagagattgttcgccgaagaccttatgcagttatattgtttgatgaaattgagaaggcccattcggatgtatttaatgtgttcctgcaaatcttagatgatggtagggtgaccgactcgcaaggacgcacagtgagtttcaccaatactgtcatcatcatgacatcaaatgttggttcacaatatatcctaaatacagatgataatgatgatgattcatcgaaggaagcgacttatcaaacaataaagcaaagggtgatggatgctgcacgtgcagttttccgccctgagttcatgaaccgggttgatgaatatatagtattccagcctcttgatcgtgaccagatcagtagcattgtgcgattacagcttgaaagagtgcagcagagattagctgatcgtaaaatgaagattcaagtgagtgaagctgctattcaattgcttggaagtcttggttatgaccccaactatggagcacggccagtgaagcgggtgatccagcagaatgttgagaacgaattggccaaaggaatattaagaggagaattcaaggatgaggatactattttagtagacacggaggtcagcgcattttcgaatggacaacttcctcagcagaagctagtgtttaaaagacaagagtctggttcagattctccagctgagaaccaagaagctttctctcagaaactatgagactacacctcaacatcttgtttagacacatactatgatttcgagcatcgaactagtagtagctcttgtatctagattatggatatacatatttcacggctttgaatagcaaatacctacacagttgaacagtgtggagttctgttttcgtataataaatagcttattagtctatag

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