2024-11-15 19:28:27, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001133960 3502 bp mRNA linear PRI 10-MAR-2024 DEFINITION Pongo abelii claudin 12 (CLDN12), mRNA. ACCESSION NM_001133960 VERSION NM_001133960.1 KEYWORDS RefSeq. SOURCE Pongo abelii (Sumatran orangutan) ORGANISM Pongo abelii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CR859386.1. ##Evidence-Data-START## Transcript exon combination :: CR859386.1, CR557419.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN07839603 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3502 /organism="Pongo abelii" /mol_type="mRNA" /db_xref="taxon:9601" /chromosome="6" /map="6" gene 1..3502 /gene="CLDN12" /gene_synonym="Claudin-12" /note="claudin 12" /db_xref="GeneID:100174503" misc_feature 181..183 /gene="CLDN12" /gene_synonym="Claudin-12" /note="upstream in-frame stop codon" CDS 208..942 /gene="CLDN12" /gene_synonym="Claudin-12" /codon_start=1 /product="claudin-12" /protein_id="NP_001127432.1" /db_xref="GeneID:100174503" /translation="
MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTVYTGLWVKCARYDGSSDCLMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGALLLCLIGMCNTAFRSSVPNIKLAKCLVNSAGCHLVAGLLFFLAGTVSLSPSIWVIFYNIHLNKKFEPVFSFDYAVYVTIASAGGLFMTSLILFIWYCTCKSLPSPFWQPLYSHPPSMHTYSQPYSARSRLSAIEIDIPVVSHTT"
misc_feature 238..300 /gene="CLDN12" /gene_synonym="Claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q5R9K1.1); transmembrane region" misc_feature 469..531 /gene="CLDN12" /gene_synonym="Claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q5R9K1.1); transmembrane region" misc_feature 613..675 /gene="CLDN12" /gene_synonym="Claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q5R9K1.1); transmembrane region" misc_feature 730..792 /gene="CLDN12" /gene_synonym="Claudin-12" /note="propagated from UniProtKB/Swiss-Prot (Q5R9K1.1); transmembrane region" misc_feature 889..891 /gene="CLDN12" /gene_synonym="Claudin-12" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P56749; propagated from UniProtKB/Swiss-Prot (Q5R9K1.1); phosphorylation site" misc_feature 898..900 /gene="CLDN12" /gene_synonym="Claudin-12" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P56749; propagated from UniProtKB/Swiss-Prot (Q5R9K1.1); phosphorylation site" ORIGIN
ggcacttcctgggacgctgagagggagacgctccaagaggctcctcagtgtgggcgagtaaaatgccctgcgtgtgagaagcaggctcagattattgctactctgtattcagatctgcatgtgtttcttctaagctgaataaagctgttttggaactgtcaggtacctcaaaggtctgactgacagcactccgcaagcttgcctgccatgggctgtcgggatgtccacgcagccacagtcctttccttcctgtgtggaatcgcctcagtagcaggcctctttgcagggactctgcttcccaactggagaaaattacgattgatcacattcaacagaaacgagaagaacctgactgtttacacaggcctgtgggtgaaatgtgcccggtatgacgggagcagtgactgcctgatgtacgacactacttggtactcatcagttgaccagctggacctgcgtgtcctccagtttgccctacccctcagcatgctgatcgccatgggtgccctgctgctgtgcctgattggaatgtgcaacactgccttcaggtcctcagtgcccaacatcaaactggccaagtgtctggtcaatagtgcaggttgccacctggtggctgggctgctgtttttcctggcaggtactgtgagcctctcgccatctatctgggtcatcttttataacatccatctgaacaagaagtttgagccagtcttttcatttgactatgcagtgtatgtcactattgctagtgctgggggcctgtttatgacttcccttatactgtttatttggtattgtacatgcaaatctttgccttctcctttctggcaaccattgtactcccatccacccagtatgcatacttactcacagccctattcagcacgctctcgcctctctgccattgaaattgacattccggtagtttcacacaccacttaatggggaaatagttaattgttaaagaaaacttcttgtagcctcacattccccttgtgcaaagagctcttttggacctacatacattttcctttgtttttgaccaatcaatgaagccaaatttgtatgtcctagtagaatgaagtgctgctagtttttatgagaagtacattatattaaatgtgaatttttttaattttgcttcttatactggaaggaattttagccttcatattgatatctaattaattatttaagtggaagaggcctgcatcacaattgaggtaatttagagcaacatgttaaagaatgatggttagcagaagctgttgcataccatcttcatgaatatttcagtgtgtatttttctttttctataatacctttaactgcaaagaaaaggcagtttcagatataagaaatttatttcaggtaagggtaatattttaatagtagtcaataatctagcttaaggctgtaactcttctcttggggctaattgtatgaataggtgtcagtatgttgaagattactttcttttgtgactttcttctacctcatgccagtgtttaaaagtaaaatgtattttaaatgatgttagaataagactaccattctaaatatcacctacttatgaataacatgtaataatttttaacattaatgattccataaattgtattattggggttagaatgtgctttatgacaggttagtatttcctctgaggcagaaaactcttttttggagatattatccatcaagcagtactcgtgcccatatgcaatctcttagtggctaagagaaataaataaaagggccataatggtttgttctctttcagacataatttagtaggggacaagaagtctgttcttcagtgactacactagagatttactctggtgactgccttttgagttatgggtgaagtaaggtatggctttaccataaccttgattcattcacccttgatgcatttctcgcccccatcactgattatttccttgagcatatatttttgcctaactaacactttagtaggtgctatagaggatacatgaaaagtatgagatctggtcccatccagtaagacattttaatagagaagatcaaaatgttacctgacagttggggaataatctgacttcattgtcagttggccttaacttcttaatcattgatccaggaatatttcaaccagagacacaagtttctgtcagacagacaaattgtacaacaccaacaatatcctggaccttgaaattctgtttacttcagtccattgtatccttaaggcacctgtgctagcctagattttgtaataacactgatttatgagaatgggcaaaagtggtagggaaattgttccctctccacttctgaaagtatgatgatgtattaaggatggaggagttattaaaaatgtctcttctgatgaggtaacaattagatgaaaccatgttaaaactgagatgaacacttagaaattcagggatattgggtcgttagccttatgaatttgagctgcttatttaattggtgtaatttgctacatattagtactatattcataaggatttttttattaaccattgcagattttacaaacagctagttatatggtaaacagattattatgcctttttgcaattctgaatatgattctagtatttgtgtggatgtatttggtactttttcccctaattccaacactagtttatatatagagcaaataaatctagttgtataaatttttaaatgccgtcagtagaaagcacacaaggttatgatttttttaattactggcttctgatttctttcacttctgatccttttcgtttttctcagatgtagctgagtcttgatcattttaagacaacgatgggtagaattttgagattaatattaattttttccctttttgttaatttcagtcccctctcactatgcttttgtccagaaggatcaagaattctaccatcccttgggtctttgtgtataaacaatgttaaataaaggtagactcagtctttaacatattagacagttttttagtccatgggattgtaaatataaacattaactttcctataagaatcttttggctttgtaatctatagccccaaattggtatttattatggattcactagacaaacagctgtttccttattgtcttttttctttagtgtttctgatttgctatcagtagctatttttaaagccatcaaaggaaaataattatttacagtttttgaagtcacttttgagccctcatcaagctctcattgtgatgggagggatacctttttgttgttaaaagcctattattgttgaaggccttttatggaaaccaacttggaaaacaaccttaaacgtggatgtatcagatttggtttatccagccgtgggagagaaaacaaacctaagtttactttacttgtacatatacactataatggatagtatatttgctgtaaactacaatgtaaaacctcaataaaagtgcactgtacttcttaatgtttattaaaagatgtatttttacaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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