LOCUS       XM_031898091            2988 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis BCL2/adenovirus E1B 19kDa interacting
            protein 1 (bnip1), transcript variant X1, mRNA.
ACCESSION   XM_031898091
VERSION     XM_031898091.1
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030679.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="3"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..2988
                     /gene="bnip1"
                     /note="BCL2/adenovirus E1B 19kDa interacting protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 20 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 18 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:780363"
                     /db_xref="Xenbase:XB-GENE-977996"
     CDS             238..867
                     /gene="bnip1"
                     /codon_start=1
                     /product="vesicle transport protein SEC20 isoform X1"
                     /protein_id="XP_031753951.1"
                     /db_xref="GeneID:780363"
                     /db_xref="Xenbase:XB-GENE-977996"
                     /translation="

MFHVLHPNSYDIRECPGPLSTLNDFNAQVKEKFHLLRLRIQDFEQLAKEQDKESDKQALLKEMECHKKQMLSNQTVWRKANLSCKQAIDNAEKDELLDGGDPTRQRKVAKENLAQSTSNITESLMGISRMMAQQVGQSEVTMQTLATSSRTIQEANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYILKKRLLPF"

     misc_feature    577..855
                     /gene="bnip1"
                     /note="SNARE motif of SEC20; Region: SNARE_SEC20; cd15865"
                     /db_xref="CDD:277218"
     misc_feature    order(592..600,604..621,625..630,637..642,646..663,
                     667..672,676..684,688..705,709..714,718..726,730..735,
                     739..747,751..756,760..762)
                     /gene="bnip1"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277218"
     misc_feature    679..681
                     /gene="bnip1"
                     /note="zero layer; other site"
                     /db_xref="CDD:277218"
ORIGIN      

gcttaccattaagggtccgagtttgtaatattccctatgcaacgccacctagcggcaggccgagcttacgtaccagttccgaagactccaaactcaatggtttatgtttgaatgcggactggtgtagcgttaccggcatgtactgatagttccctacggtcacagcctactgtatggtttggttaacagagcctggcagttttattttcctaaattattacatgggcttcctgctacatgttccatgtactgcaccctaacagttatgacatcagagaatgccctggtcctctaagcaccctaaatgatttcaatgctcaagtcaaggaaaaattccacctgctgaggctgagaatacaggattttgaacagttggctaaggagcaggataaggaatctgacaagcaagcattgctgaaggagatggagtgccacaagaaacagatgttaagcaaccagactgtgtggcgaaaggcaaacctttcatgcaagcaagcaatagataatgcagagaaggatgaactgctcgatggaggagaccctacaaggcagagaaaagtagcaaaggaaaacctggcacagtcaacgagcaacatcaccgagagcctgatgggtatcagtcgaatgatggcacagcaagtggggcagagtgaagtaaccatgcagacactagccacgtcatcacggaccatccaggaagccaatgaagagttcaaatccatgtcagggactatacaacttgggcgtaaacttatcactaagtacaaccggcgtgagctcactgacaagctgctcatttttctggccttggccttattcttagcaactgtactgtacatcttgaaaaaaaggctgcttccattctagtcactgtgtgggtttcttacttcagaggatttggatgcccatctggcgaggaccactggccttaaagattgccatcagctaactgaactatacagaatactctggaactagtaactaagactgtgtcagctctaatctgtttaaaatggtgcacaaagttaaattatttgtaggtttattattggttaaactgttagggaattctgggagctgtagattgacaacagcagaagaaacaaaggctgaacatccctgctttagactgtggtactggacctgacgtttgtgttccattcatgtaagttgccatacaatggattttatgatagtcttatgtactgatgtaagtcatcactgaaacaaatgatcatttactgtagactggtgctttttggttacagtcttaggctaaaactgaccatgcacaagcaaaattacccaaatgcagacgtttgcacagtttgatgggctttgttgttgttttgatcttttggctactaatgggcgacctgttgatgaggactacattagaggtgtgcaggccagcccaaagtccacatgacccatgggttcatgggtgggttcgggccagcaatgtagtgggtagaactatatgcaggactgcctcccccagccagtcctgttctggcatgattcctttggcactagcatttatagactcgcacctcactgcctcatcctttgacatcagagatggagagttccgaatcagatatataaacagtagcagtgtagcaggcatgtacagccttttgtggttcttgcctgacagaattattcagcattcccaaacaatagcttgttaagcccaataagattttgaggcaattgtttcagtccaataaccaggactcagccaccatctaggtcaagggtggtcaagtcagcttctttcctgccatcactgatgtaaaaacatcatcagtgagagggacatttgcccaaagacaggacagcagaggactctggggtcagtggtagttctagctgtaaatcttgtgtaagaaaataatttgaatgaaccctataattggttatacataataaatataaatatggaggacagaaggtagctgggcacaatatcatgctgagatttactctctattctggagaacagagactttcagctattcagaaaagcactgtgtacaagtgcgaaaattaacatggtggattgcgcctgttttagacactttgtaccttgtcctgcactttgtaaatgacccctgcaagaaagcaaagcagaaatcacagggatgtagatcatctggtcttttaataattaagatatagactaactgtacttatgcaggacaactgcaaatgactttttttgcaatttgtataaataacctcactttcctccagtgtttacttcagtctacagctacagtggtaccttacaacatgtaatttcttcagggggtggaatgtcaggagtggaatattgttgaaaatgtacaataatactgtgctcctttaacacagccatttcaggtgacttgtagtatctcacaactgaaggcaacttttttgtccagccatattgtattgtaagttagtgtctctctataaaatgtctgcttttcatccagttaaataaagatgcacataaactgctatatatctgtaagaagcagtatggccatcatgcagactaaacgtttatatggtttttgtcatgagttatttttaacagataatgagtgtcaaacttgtggctattctactgcatggaatcccccttcaccctgaaagccagagaagatggggttatagcttccggtagcaggaaggctgctcagtttatagcactaacatataatatgtgcttgtcattgcaagccattaattccattgtgctgtgtggaggaaaccatgtgggggctgaggctattactagctgtcccttgtacagaaggcaacggcacagagatcagacttcctgtgtctacatggaccaattctctcatggaactttcaatttcctttaattctcatgatattttatgtgattaccatttaactaatgtcatgtcagctggcaggaggacaggaataagtttttgtcttctttaataaattatatttatgata

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