LOCUS       XM_031894616           10652 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis trinucleotide repeat containing 6C
            (tnrc6c), transcript variant X2, mRNA.
ACCESSION   XM_031894616
VERSION     XM_031894616.1
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030686.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10652
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..10652
                     /gene="tnrc6c"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 98 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100496469"
                     /db_xref="Xenbase:XB-GENE-6044444"
     CDS             472..5988
                     /gene="tnrc6c"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6C protein
                     isoform X2"
                     /protein_id="XP_031750476.1"
                     /db_xref="GeneID:100496469"
                     /db_xref="Xenbase:XB-GENE-6044444"
                     /translation="

MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPTKSGSNQPQPAAASTSTSTVPNSNGKRASANGQQSAASRYLPREVPPRFRQQEQKQLLKRGQPLPAGTLAIGNPTQDTGQARVSPPPPQGAGGTPHPSKAHSDLSHSGLGDHYENSHWGLQPSLRGEATCSWDKVIIDRTDKEAWPSITGTESESASECTTDTDSASNCGSEKSSMATSAQGNFTGHTKKTNGNNGANGALIQSTSNQSALGAGGANGNGNLARVWGVAPGSSSGIAHCPIGGGDGKVDNMIGESRSHNCWGASNPNTGINLNLNPNANPAAWPVLGHEGTLGGGSPSSISSPVGAIGQNMGNQNGNAAGSLGAWRNLQSQESTEPQTSNSQNVSFSVQPQNLNTDGPNNTNPMNSSPNLINAMQTNGLPNWGMAVGMGGIIPPHLQGLPGANGSVSQVSGAGGDGTGSSVWGLSQGGPSVGSCGSGFSQEGGDGSSKQNGCAVQKDGSGMSAWDSGPPSSPGVLPWGRGRGSVGGMHPGPWGHTGHSTSNGVNGEWGKVPNQHSSNDMNGKGPTGWDSPSVGMQSTQQGGEQMNSRAKAVASVTAANDRCTGAGNANEGKGGDGQQGDPGMAEQMPRQDLDPRVLSNTGWGQVPVRQNIAWELEEFQRPDHKNVGTEAWGGSNTQPSNSGGKSEGSIMNSTNTSSVSGWMNTQPVSAPVSASWGEKTPNGPGGWGEHASSTVVNAAAKSGHAWSASANQEDKSPTWSEPHKSKPQGWADGQKSNPSWSSTGGDWTDGPPVPQHITDGKKNGTGWDSDSKPGSGWNENSRPGTSGWGNGTNTKNNSGTGWGEPMKAPQQQNWANKPQENNVSGWGGAASVKQNGSVWIGGPVPATPPTKQKDAGADSTGWQEPSPPSIRRKMEIDDGTSAWGDPSNYIKTVNMWDRNNPVSQSIPATNTNSAATPSTPPNTNMVEPQPTHQPSAQQNRSPLLGPGWGDLPNVNSKTEASWGEPPSPSAAVDKGTSAWGKPKNSTSGWGDGSAEPPGTYGRTSAPAAAAAPMLCKPAPKSMQEGWGSSGEEAGLGSQWEEDEGDMWNNAASQDSNSSCNSWGNGPKKGLSKVIKTPSKSDEVWIMSRLTKQLTDMGFPKEPAEEALKSNNMNLDQAMSALLEKKVEIDKRGLGLADYNVMVTKPLSCRQPPISKESSMDRPTFLDKLTISLSNQDGGLAEEPTSSPFLPSPSLKLPHPNSALPNQALGAMTAGLGMQNLNSTRQMQSGNLGMFGNSGAAQARSMQQQQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQLQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQQQPPPQHAPLHPPAVAGLNPGMNVNNMDMAGSLSVKDSSQSQSRLPQWTHPNAMDSLTNAASPLDPSPGKPGALPGGLNIGPPGKSSLDDAYSRYDLLSNSESPTSPPVPVSDSWSRAKSESEKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSSPISHTQASLSHELWKVPRNTTAPSRPPPGLTNAKPSSAWSSNQLGWTSSYSSGSTWSTDSSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEATKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPPTSSWQSNTGNSQPRLGSAGGSHTLVRSDAAHWNPPCLGSKGNNDLLWGGVPQYSSSLWGPPGSEDARIIRSPTPLNTLLPGDLLSGESM"

     misc_feature    3478..3813
                     /gene="tnrc6c"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    3820..3933
                     /gene="tnrc6c"
                     /note="UBA domain found in trinucleotide repeat-containing
                     gene 6C protein (TNRC6C) and similar proteins; Region:
                     UBA_TNR6C; cd14283"
                     /db_xref="CDD:270469"
     misc_feature    4087..4749
                     /gene="tnrc6c"
                     /note="M domain of GW182; Region: M_domain; pfam12938"
                     /db_xref="CDD:432890"
     misc_feature    4705..5457
                     /gene="tnrc6c"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    5437..5700
                     /gene="tnrc6c"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6C protein (TNRC6C);
                     Region: RRM_TNRC6C; cd12713"
                     /db_xref="CDD:410112"
ORIGIN      

agtgcgagcactctctctccctagcgccgccctcccgctgagggttcttgtcagtgagtaacaaaatggccgcggctgcccagctcttgcctgcctttagcggattcacatcagcgctgtaaggggatagtaactggccgcttgctccaaccccccctgctgcccggacactccccgccgagccgccacctccctatccgtcctaccgggggagcctgtcaggaaccgtaccggggcttgtcctggctccgcaccatcgcttcgcggcctccctggatccctccggccgtcactggagcccctctctcctccccctcgcccggctcctgaacgggaggggacagcagcggcccagtgacaggagggaagcggggagagagcccccaccgagcccgacactgccagccgccagctcccgggggagaagagagcagggagaaagaacaagaaacccaaagagaggaacatttgatggaagaaaagaaaaagaaaaagcaggaagaaaaaaagaagaaggagggagctcagaagaaggctgctgaacaaaaaaccaaagtgccagaaccaaccaagagcggttccaaccagccccaacctgcagctgccagtacttctaccagcaccgtcccaaacagcaatggcaaacgggcatctgccaacggccagcagtctgcggcctcacgttacctgccgcgtgaggtgcccccgcgcttccgtcagcaagaacagaagcaacttttaaaaagaggtcagccattgcctgccgggactttggccattggtaacccaacacaggatactggacaagccagggttagcccccctccaccgcaaggggctggtggaaccccccatccctcaaaggcccactctgatctcagtcacagtggtttgggagaccattatgagaattcccactggggactgcagccgtctctccgaggtgaagccacttgtagctgggataaagtgataatagacaggactgacaaggaagcgtggccttccattactggaactgagagtgaatctgcctcagaatgtactacagacactgactctgcctccaactgtggctcagagaaaagtagcatggctactagtgcccaaggcaacttcactggacatacaaagaaaacaaatggcaataatggcgccaatggagcactcatccaaagcacttctaaccagagtgcccttggagctggtggggcaaatggtaatgggaacttagccagagtttggggtgtcgctccaggctccagctctggcattgctcactgccctattggtggtggggatggcaaggtggacaacatgattggggagagcaggagtcataactgctggggcgcttccaacccaaatactggcattaatcttaaccttaacccgaatgccaacccagctgcctggcctgtacttggacatgaagggactttgggaggcggcagtccttccagcatttcaagtccagtcggtgccattggacagaacatgggcaaccagaatggaaacgcagctggtagtttaggtgcctggaggaacctgcagtcacaagagagcacagaaccacaaacgtccaattctcagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccatgaattcttcaccaaaccttattaatgcaatgcagacaaatggactgccaaactgggggatggctgtcggaatggggggcatcatcccaccccacctgcaaggccttcctggtgctaatggttcagtttctcaagtcagcggggcgggaggtgacggcacgggcagctcggtgtgggggttatcgcagggcggcccgtctgtaggaagctgcggttcagggttcagtcaggaaggaggagatggcagctctaaacaaaatggctgcgcagttcagaaagatggcagtggaatgagtgcatgggattcaggaccacctagtagccccggggtgctgccttgggggagaggcagaggcagcgtaggaggcatgcatcccggaccatggggtcatactggacatagcacaagtaacggtgtgaacggtgagtggggtaaggtcccaaaccagcattccagcaatgacatgaatggaaaaggacccacagggtgggacagccccagcgttggcatgcagagcacccagcagggaggtgagcaaatgaattctagggccaaagcggttgcatctgtcactgcagccaacgacagatgcaccggcgctgggaatgccaatgaagggaagggaggagatggtcagcagggagaccctgggatggcagagcagatgccaagacaagatcttgacccgagagtcctttccaataccggctggggacaggtccccgtcagacagaatattgcatgggaattggaagaatttcagcgtcccgatcataaaaatgttgggacggaggcctgggggggttcaaatactcagccttcaaactcagggggaaagagtgaagggtccatcatgaacagtaccaatacctcttcagtatcggggtggatgaacacccaacctgtgtctgcccctgtaagtgcaagctggggagaaaaaacgccaaatggtccaggggggtggggggaacacgcaagctctactgttgtcaatgctgctgccaaaagtggtcacgcttggagcgcgtccgctaatcaggaggacaagtcgcccacctggagtgagcctcacaagtccaaaccccaagggtgggccgacgggcaaaaatcaaatccaagctggagttctacgggcggagactggaccgacgggccccctgttcctcaacacattaccgacggaaagaaaaacgggacagggtgggactccgacagtaagcctggatctgggtggaacgagaactcgcggcctgggaccagcgggtggggaaatggcacaaacaccaagaataattccggtacaggctggggggagcccatgaaagctcctcagcagcaaaactgggccaataaaccccaagagaacaatgtgagtgggtggggaggagcagcatctgtaaaacagaatggatctgtgtggattggtggaccggtgccagcaacaccaccaaccaaacaaaaggatgctggagctgattccaccggctggcaagagccttctccgccgtctatacgccgtaagatggaaatagacgatggtacctcagcttggggtgacccgagcaattatattaaaactgtaaacatgtgggataggaataatccggtatctcagagcatccctgcaacaaacaccaactccgccgccactcccagcacccctccaaataccaatatggttgaacctcagccaactcatcagccaagtgcccagcagaaccgatccccactgctcggtccaggctggggagatttgcctaatgttaactcaaagactgaagcctcttggggagagcccccatccccgtctgctgctgtcgacaaaggcacttcggcatgggggaagcccaaaaacagcacttcaggttggggggacggctctgcggaacctcccggaacatatggaaggacaagcgctcctgctgctgctgctgcccccatgctgtgcaaaccagctcccaaatctatgcaagaaggctggggtagtagtggagaggaggccggcctgggcagccagtgggaggaagatgagggagacatgtggaacaatgctgcttctcaagacagtaactcctcctgcaactcgtggggcaacggccccaaaaaaggactttccaaggtcataaagactccaagcaagtccgacgaggtctggatcatgtcccgactgactaaacagctcactgatatgggcttcccgaaagagcctgctgaagaggccttgaaaagtaacaatatgaatctggaccaggccatgagcgctctcctggaaaagaaggtggaaatagacaagcgtggattgggattggcagactataatgtgatggtcaccaagcccctgagctgccgccaaccaccaatctccaaagagtcttccatggaccgccccacttttcttgacaagctcaccatctccctctccaatcaggatggcggcctagcggaagagcccacttcttcaccatttttgccttcaccaagcctgaaactcccccatccaaacagtgcactccctaatcaggccctgggtgccatgacagcagggcttggcatgcagaacttgaattccactagacagatgcagagtggcaatctgggtatgtttggcaatagtggagcagcacaagccaggtccatgcagcagcagcagcagccaccagtgcaacctctcaactcatcccagcctagtcttcgtgctcaagtgcctcagttcttatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcaaccctgcactattaacttcgccaattaatcctcagcatatgaccatgctgaaccagctctaccagctgcagctggcgtatcagcgtttacaactccagcagcagatgttacaggctcagcgcaatgtttccggacccatgagacagcaggagcagcaagttgcacgcacaatcaataacatgcagcagcagatccagcaacaccaacggcagctggcccaggccctgctcatgaagcagcagcagcagcctccccctcaacacgctcctttgcaccccccagcagtggctggactgaaccccggcatgaatgtaaacaacatggacatggcaggcagtttgtcagtgaaggattcatctcagtcccagtctcgtctgccacaatggactcaccccaacgccatggacagtctgacaaatgctgcttctccacttgaccccagtcctggcaagcccggtgcccttcctggggggttgaacattggtccccctggaaagtcctctctggatgacgcctacagtcggtacgacctcctgtccaacagcgagtcgccaacgagccctcctgtacctgtttctgacagctggtcacgtgccaaatctgagagtgaaaagatctccaatggatccagcatcaactggcctcctgagtttcaccctggggtaccttggaaaggactgcagaatatcgacccggagaatgacccggatgtgactcctgggagcgttcctacgggccctaccatcaacaccaccatccaggatgtcaatcgctatctactaaagagcggagggaaactgtctgatatcaagtccacgtggtcatccagccccatctcccacactcaagcgtccttgtctcacgagctgtggaaagtaccaagaaacactacagccccatccagacctcctcctggactgaccaacgccaaaccctcctctgcctggagttcaaaccaactgggctggacaagctcctattcctctggttccacttggagtaccgacagctcaggaagaacaagcagctggctggtcttgcgcaacctaaccccacagattgatggctctaccctacggacactgtgtctgcagcacggccctctgataacattccatctgaacctcactcaaggcaatgctgtggtcagatacagctccaaggaggaagccaccaaagctcagaagtcactgcatatgtgcgttctgggtaacactactatcctggccgagtttgctggcgaagaggaagtgaaccgtttcctggcacaaggacagccgctgccccccacctccagctggcagtctaacactggcaatagccagccccgcctgggatccgcagggggctcacataccttggtgcgcagcgacgccgctcactggaaccccccgtgcctcggcagcaaggggaacaacgacctgctctggggcggagtccctcagtactccagcagcttatgggggccccccggatcagaggatgcaaggatcatccgcagccccacccctctcaacaccctcctgccgggggatctgctgagcggggagtccatgtgatccaacaacacatcatcagcactaacaaagaaccttaatccaacatggaatccttcccaccatggctcagagaagcaccccgtctgacccggcactatagccttctctccatgcagtatcttctctccgtcacacccccccccgccggcacccttgtgaactgttgcctctaacagtatgggtagaatgtgagctggggggggcggaaggattcgggagaaagtcgagggatctgagttactcagtacaggctgacaaagtcttttattttttgttttgttttggggggttttttgtgtttcttttaacgtttcagaagtgttcaaagaagaagacaataacattatcaagctgctcctgctgggactagaacttacgggcactttccttacatggcagggctgaagcggtttactgggaggggagtgggttagggagggctggggggctagagaagcctatcgttaaatgagccttggacttttatgcacatgaggcggggcccctgtcaatcagaatgggggggaggagcaagcgagagatttggtgtatacgcactgtgtacactcgcagctagatgtaggacttggtacggaactcacaggccgactgtagagaaggagcggaggatccggttgatcaccccgtggatctgcctatgcacataaccttcgtccagagcttctgcccctgccttgccatcttctctctacatctcctcaacactatctccttcttcttctccttccaggcaccatatcatctgattagaaatacttgaatccagcagaggaaagctgttttttattagttcttatcagggtctccaggccgctgtcgtccatggcaacgcagctctttgtggacttcaacaagatgacaaatggcaagccccgccctcctttctcccccccccccccccttttctttttaatttaattcggcatcgattatctaaaaatagatatttttggaaacagactgtgttcttagcccagggagtgaaatggctgcccctatgggttctggatcttctggataccaagtcgcttatggtcggccaatcaaattactcagagttggctactgatgcttgccaagcctgagccgtgccattgccaaggtgaggggagtcacccattgtgtccaatgcccggcactgcccataggatagaggcaccctccaactaactgcacttaatgaattcccccgcgcctctttgtagggaaatacatttgaaaaaaaaaaaactatcatggctcctaagctaatgtcccagtgagccggggacactgcgtttatattatagatatcgggcagtcactcggctccaattaatgctaatggatattgggccccactgtacagaaaccttggagatcttcctttacctttaggaatagtgttaccccctaccgtaatatgtaaggatattagaagtcagcgaggattccacatattagaaaaccctgacattttaacgtagggggttcattatatttataacacagaccagtgactcctataacgcaagtggtatggccgagtcccctttataataatatagtttatgccaaaagtctgtgaggatgagtttatctgtgaaggcaaagagcaaggggaagtaaaacccagaattgggttgagggtctgtatttgttacaaagaaagagatggaaaagaccagcgtgccagttataatgatttttgtggtcctggccctttaagggtcacatagatatgtgttattctagggaaacgttcaaagagaaaatacatttatcccacaatatcgaagggacccggtttagttggcctttagcgcaccccatgccaaggcttctctccactgagggacccagacgggagttcatttaagaggatttaatgtcctctgagcacttgtgcaactggcattcattttctgtatttaggtctggtattagcagtgtaaaactgcaaatatcccacaaaccacttccaatagaagattcatgcaaaatcccaatgtaacatgaagatccccgggcttcaccccagctcccattatccctgggcgggttcttacaatagttaaggcaccttgttagtcacttatgggccatttcccttccctgggcagagcggggcaggctgccattgtggcctctgtcttacagagaaggaggggagtctttgctaaacctgaccatttctgaaaagtatttttttttttaatcttatttcatgcttttaggtcaggcttttttttttttttttttcctgtttttatcacctttttttaaatttgcactgagattttcagctccgctttaccagctcggtggtcgttgccagcggagatgcagagggacaaagcgtatccatgtttactcaaggacctgtttgtcaaaaacaaaaaacatttttttgaattatctctggcgcaaaaccaaaaaaaaaaaaaagaagtgtctgcctttccagcgactttgtggcgagaagcggagacttgcgcccggcgtatcccgtatcttctgaactgcgagagaataaaaagcagaagccgtcgcggctctaacctgtttacaaaccttatcgttttatcatattctgtgttttctgcttttctccaaaaaaagataaaaaaaaagacaaaaaagaaaaaaaatttttgaaaaaaaaaaaaaaatacttccattgaatttcaaaagtctattttcaaaatcgaatagaaattcctttacatctcggggaaaagtaaccagtgttttatatattcagcggaaaagaacgaacattcgccattttatttccccatttttttatgtggttttttttgggtttatttttcccagatggaaatttcattttttttttttggaaatcactatcttgcacatggtggatacatttactcaggaaaaccggacatttccagaggagtaaaaaaaaaaaaatgccacacaaccatttcattgtattttttagaaaaacaaaaaaaaaaaatgacaaaagagctataaaaaaaagatgtaaaacgaggaaaaagaaaaaaagagatttcccagctccaagcactgagaatacggtgggggggggggggggggggggcggcggaaccggaggaaggcaaactattcctgtttgtagcagttacataataaccaaataatggacttgaaatgattcaagagtgctttattcattgaaaaagaaaaaacaaaaagaaaaaaaatattgctttatgttaaaaccgtgactttatggggggtattgggggggtctggaaggaacaagtcaccttttacagccgcggaagggaatcctgtaaccctacaaggaaactgtacaacttgggattgggtatgtggcggtggaaggggattggctgatcggaggggggggggttgttttttggaggtgccagaaaggagagtttttgtacccagcaggatcctgacctatgcacaagccgagacgagaagcttttttggggggtttttttgtttgggggggggggcggtcaaatggtattataattgccccggggcaattcttttgttacccccccttcctattgacaagacagggaatagaacttttcagaaagtaaaaaaaaaaaaaacctgtgtatttcacccccaacttgtgtcgtacgttggaacaggattttctttttgtttgttaatcagtaataatttgtgtgtgttacttcataatgctacctctgtctgccataaactgcccctcggggggcagaggaacagactgtgacacggggagggaactacaggcactgggacaatccttactccccgccgacatctccgcgccgctccatttcccccgctttgcacgccagagaggacagacagcagtgttcagaaggtttacaagaatttctagatatatatatatataatgcagtcgctcctaggttctctctctgcagggggggggggtgttgtttatgttttttttttttttttttttttttctctttccaattgcctttcttttggatgcaaaattctcccaaagatgtttcaaaaaagcattttgtggctcttctattgttactgaactctggctgcaaaggtggggaaatgcgcaggttgtacagcgagagcgcaggcagcacagcactcctccaaccgggacattggctgttcgctccatctttgtttgcaggaattcttccaccattacaaaaaagggggatgctgtgtatttgggggggggcgtccctggcacgggaagggtttgaatagcactttggccacgtgacgtatggcggcgcttacgacagagcccccgggcgaggatgctgtgggtgctgcgggggagcgcagggcgtacaccttttcttccatgcaaaaaaaaaaatggatttatatcttaaagtgaaggacatggggggtctccccaaatatccgactgaaccatgtcgccatctttgtgggggggtgggggaggggggtctttctcatttctcagattctgttggcttctaacatgtttaacgtttgcgactcaaaaggcgaggatttgtgacttacgtttttcttttctctcctagaatgtgtttgttaatgaattgcaccaaaagctgcttttaaacaaaaacaaaacgaaaatggaaaaaaaaaaacaatgttgaagcttcttttaaaaaaaaaaa

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