LOCUS       XM_031893835            9340 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis trinucleotide repeat containing 6A
            (tnrc6a), mRNA.
ACCESSION   XM_031893835
VERSION     XM_031893835.1
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030685.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..9340
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="9"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..9340
                     /gene="tnrc6a"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 143 ESTs, 6 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100379740"
                     /db_xref="Xenbase:XB-GENE-981714"
     CDS             1..5661
                     /gene="tnrc6a"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6A protein"
                     /protein_id="XP_031749695.1"
                     /db_xref="GeneID:100379740"
                     /db_xref="Xenbase:XB-GENE-981714"
                     /translation="

MGEPTLQALVLQTYAFYINTALYSFSNYVFMRETWKLQLPKTLKEILAVPDQIISQPSSVNQNIGISTATSIQHNNAKRPSSISPQQQQPVPHYPLCEIPPQFRHQEQKHLVKCGQQLPSIAANLGLATKVLNRSRSSTVVYQEGPVTEVQGSSKEHPELNHGSLGSHYENTHWGPVSSNGDSSTTWEKVIVDGTEKVWPSITGTSSELTSECMDIDSSPSSGAGKSHLVPFGDTTEEMDTMRNGIGHSSQSKLLVGNNSNNAGNGSINGPWAVTHGTVISTCQDGPDSNSDSRHNRINAWGTVNTSVNGVLNPSTLNMNGNHGAWPILDSNGHALKGSNNSGTNVPSSTIGQVSNNRSINPKMGSSAPGSWGNLQENGDPELSGTRKASFSGRPQNLNTEMTGPNNTTNFMTSSLPNSAGLLQTNELPNSTGHGAWSVSNMNHSPLHTPSVTNGTSIPHLSNGEEKNSGSYGTTWGTSGSSYSGDKISVPKGQANGDTVNATIMQPGLYGPNGPNNKINGNKGGLWESGTVNSQNMHWGSGNAGTSGGSQRGWGNAAQNTGTNLSNGGWNKLPNNQHSNEGENKENGRKTSNTWKSAEEENAGQISAGSKGIEANVWAKTTGTGESEGSVDSTGSQSEYGTGHGLQEIRKTDQQTLLQSIVNKGDLDPRVLCNTGWGQIPIKQNTAWDTDAASSLSNRKTDNGTEAWGCSVSKTSNSGGWVDKPNPNSNDTSSVSGWGDPKSATGWGDAKGAVSQGEWEDQFAATTGMVKSNQSWGNNKEDKSNWNDAQKVKQGWGSHSGDSWGENSKSNHWGTAKSSSSSDSERSVSGWSEPSRSNSWGSGNQNNASSWAEPSKSTSAQGWGEPKKPNQGNGDVSKCGPNHMESEHLQASSAEWNKKQESGSWGAQPATNKSSGWSGGSLSTPTKEDEPTGWQEPSPESVRRKMEIDDGTAAWGDPNQYKFKNVNMWDKNTSKNMSAEEHQGQVYALPPTSSTMPNKESSSSNSNSSGWGETWSESRAPVVDNGTAAWGKPVESSGGWGNRSTNGVTSGWNHTPIGQQAPGKPGPKSMQDSGWCGDDTSGPGSRHGSWGEDEDVEIGMWTSGSSQETNQSVNWPPYMKKMPTKGPLKNGNKQEENWMNPFVKQFSNLGFSRESPEDSLQSNKMELSGGILPDKRMEMDKSGLGIGDYSRVIGKVPGPRHHPKESSMDFNAYFDKDGIVSEEPQSMQFISNQNTKLPPLNSALSSQSLSSFPGLGMPNVNSVRQNGNPSMFGVGNAAQARGAQQPPAQSLNSSQPNLRAQVPPPIIPPQVPPSLLKYPPANGGLNPLFGPQHVAMLNQLSQLNQLSQLQRLLNQQQKIQNQRGVPSGGRQQHEQARSLGTQQPARQLDPNLLMKQSISQSQQQMLHQPPMKSFLENVLPHSAPELPKVPSPISSFGGFPSGLNSNSNVNMDLGVVKEPQSRLRKWTTVDSMSSNTSLDQNSSNHGAISSGFRLEDSPFGSYDFMNSSNSPSSPPGSIGDGWPSAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVRGVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYSVSHSSTAQSTSVRNSDPKPAWSPGSVANTSLAHELWKVPLPSKNISAPSRPPPGLTGQKPPLSTWDTNSLRLGGWGSSDSRYTPGSTWSENSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGTALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLTPSPGWQSLGSGHSRLGSLDSPHSISNRGDINHWNSPGASGSSSGDLHGTSLWGTPNYSTSLWGNPSNEGRGLSSPSPVPAFLSVDQLNGEPM"

     misc_feature    <979..>1935
                     /gene="tnrc6a"
                     /note="serine-rich protein; Region: ser_rich_anae_1;
                     NF033849"
                     /db_xref="CDD:468206"
     misc_feature    3070..3420
                     /gene="tnrc6a"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    4300..5118
                     /gene="tnrc6a"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    5104..5379
                     /gene="tnrc6a"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:473069"
ORIGIN      

atgggtgagcccactttgcaggcccttgtacttcagacatacgctttctacataaatacagcattgtattcattcagcaactatgtattcatgagagagacttggaagctgcagctaccaaagacgttgaaggagatcctagcagtgccagatcaaataataagccagccttcgtctgtcaaccagaatatcggtatttccacagcaaccagcattcaacataataatgccaagcggccctcatcaatcagtccgcagcagcagcaaccagtgcctcattaccctctttgtgaaataccaccgcagttccgacaccaggaacagaagcatcttgtgaagtgtggtcagcagttacctagcattgcagccaacctggggttagccactaaagtattgaacagatccagaagcagcactgtggtttaccaggagggacccgtgacagaagtgcagggaagttctaaagaacatccagagctcaatcatggtagcctaggctctcactatgaaaacacccactgggggccggtctcttccaatggtgattctagcactacctgggaaaaagtcattgtagacggcacagaaaaagtgtggccatcgatcacaggcactagctccgagttgacctcagaatgtatggatattgactcttcccccagctctggggcaggaaagagccacctagtgccgtttggggataccacagaggaaatggatactatgagaaatggcattggacatagttctcagagcaaacttttggttggcaacaacagcaataatgcaggcaatggaagtattaatgggccgtgggccgtgacccatggaactgtaataagcacatgtcaagatggccccgatagcaattcagatagtaggcacaacaggattaatgcttggggcaccgtgaatacttcagtgaacggagttctaaatccaagcactttgaatatgaatggcaaccatggtgcctggcccattttggatagcaatggacatgcccttaaagggtcaaataattctggcacaaatgttccaagcagtactataggtcaggtgtctaacaatcggagtattaaccctaaaatgggcagctcagcccctggctcctggggaaatcttcaggagaatggggatcctgaactcagtggaacacggaaggcttcttttagtgggcgacctcaaaaccttaacactgaaatgactggaccaaataacactactaactttatgacctctagtttaccaaactctgctggcttattgcagacaaatgaactccctaattctacagggcatggggcttggagtgtgagcaatatgaatcattctcctcttcacaccccttcagttacaaatggcacttccattcctcacctaagtaacggtgaggaaaaaaacagcggatcatacggtactacatggggtacttccggctcctcttattctggagataagatttcagtccctaaagggcaagctaatggtgacactgtgaatgcgactataatgcagccaggcctatatgggcccaatggcccaaacaataaaataaacgggaataaaggaggattgtgggagtcagggactgtaaactcccaaaatatgcattggggaagtggaaatgcaggaacttctggtggaagtcaacgaggatggggaaacgcagcacaaaacactggcactaatctttcaaatggtggttggaacaaattgcctaacaatcagcattccaatgagggggaaaacaaagaaaatggtaggaaaacgtcaaatacgtggaagtctgctgaggaagagaatgcagggcaaatttcagcaggatccaaaggcattgaggcaaatgtatgggccaaaactacaggtacgggggaaagtgaaggtagtgtagacagcactggaagtcagagtgaatatgggaccggacacgggcttcaggaaataaggaagacggaccagcaaactttactccaaagtattgtaaataaaggcgacctagatccacgggtcttgtgcaacactggctggggacagattccaattaaacagaacactgcctgggacactgatgctgcttcgtctctgagcaacagaaaaactgacaatggaacagaagcttggggatgctctgtatcaaagacttctaactcagggggatgggtggataagcccaaccctaacagcaatgatacctcatcagtatctgggtggggagatccaaagtctgctacagggtggggtgatgccaaaggcgcagtaagccaaggggaatgggaagatcaatttgctgctactactggaatggtcaagagcaatcaatcatgggggaataataaagaggacaaatccaattggaatgatgcacaaaaggtcaaacaggggtgggggtcacacagtggtgacagctggggagagaattcaaagagtaatcactggggaacagcaaagtcaagttctagcagcgacagcgagagatctgtatctggttggagtgagcctagtcgttccaactcctggggaagcggaaatcaaaataatgcatcaagctgggctgaaccctccaagtcaacttcagctcaagggtggggtgagccaaaaaagcctaaccaggggaatggggatgtttccaaatgtggcccgaaccacatggagagcgaacatctgcaagcaagctctgcagaatggaacaaaaagcaagaaagtgggtcatggggggcacagccagccaccaataagtcttctgggtggtcgggtggatcactgtcaactccaacaaaggaagatgagccaactggttggcaagagccatcaccagaatccgtacggcgcaaaatggaaattgatgatgggactgcagcctggggtgatcccaaccaatacaaattcaagaatgtgaacatgtgggataaaaatacatctaaaaacatgagtgctgaggaacaccaaggccaggtttatgcattgcccccaacttcaagtactatgccaaataaggaaagcagcagcagcaacagcaacagctctggctggggtgaaacgtggtcagaaagcagagctcctgttgtggataatggtactgcagcatggggtaaacctgtggaatctagtggtggttggggtaatcgcagcaccaacggtgtgacatcgggttggaaccacactcccattggccaacaagctcctggaaaacctggtcccaaatctatgcaagatagtggctggtgtggtgatgatacgtccgggcccgggagcagacatggtagttggggtgaggatgaagatgtggaaattgggatgtggaccagcggttcatcacaggagaccaaccaatcagttaactggccgccttatatgaagaaaatgcctacaaagggacccttaaagaatggaaataagcaagaggagaactggatgaatccatttgtaaaacaattcagcaatctgggattttcaagagagtcaccggaggactccttgcagagcaataagatggagctgtctggagggattttgcccgacaaacggatggaaatggacaaatccggccttggcataggggattacagtcgtgtgattggcaaagttccaggtcctcggcaccatcctaaagagtcttccatggatttcaatgcttactttgataaggatggtattgtatcagaagagccgcaaagcatgcagtttatttccaatcagaacacgaagcttccccctttgaatagtgcactatcttctcagtccctcagctctttcccagggctgggaatgccaaacgtcaattctgtgagacagaatggcaatcccagtatgtttggtgttggcaatgcagcacaagccaggggcgcacagcagcctccagcacaatctcttaactcatctcagcctaaccttcgtgcgcaagtgcctcctcccattataccccctcaggttcctccttctttactgaagtatccgccagccaatggtggtctgaaccccctttttggcccccagcacgtagccatgttgaaccagctttcccaattaaaccagctttcccagctgcaaaggttattgaatcagcagcagaagattcagaaccagaggggggtgccttcaggaggtcgccaacaacatgagcaggcccggtctcttggtacgcagcagccggcacgtcagcttgatcccaacctgctgatgaagcagagcatttctcaatcacagcagcaaatgcttcaccagcctcccatgaaatcctttctggagaatgtgctgccccactctgcccctgagctaccaaaagtcccttcaccaatcagttcttttggtggcttcccttcaggcttgaactcaaattcgaatgtaaatatggatctcggagttgtaaaggagccacagtcacgactgaggaagtggacaacagttgacagcatgtcttctaatacttctctggatcaaaattccagtaaccatggtgctatttcaagtggtttcaggcttgaagattctccttttggttcttatgactttatgaacagcagtaactctccatccagccctccaggatctattggggatggctggcctagtgccaaatcgccaaatggctccagcagtgtcaactggccccctgaattccgtccgggtgagccatggaaaggatatccaaacattgacccagaaactgacccttatgtcactcctggcagtgtcatcaacaatttgtcaattaatactgtgcggggtgttgaccacctcagggacagaaacagtgggtcatcctcatctttgaacaccacgctgccttcaactagtgcctggtcctccattcgtgcctccaactacagtgtctcccacagcagtacagcacaaagcacttcagtaagaaacagtgaccccaaacctgcttggtctcctggttccgtcgctaacacttctctggctcatgaactgtggaaagtccctttgccatctaaaaacatcagtgctccgtccaggcctcccccagggctgactggtcagaagccacctttatccacctgggataccaactccctgcgtcttggtgggtggggaagttctgactcaagatacacaccaggttctacctggagtgaaaacagctcagggagaataacaaattggctcgttctgaaaaacctaacacctcagattgatggctctactctgcgtactttgtgcatgcagcatgggcctttgataacattccacctgaacctgccccatggtactgctcttgtccgttacagttccaaggaagaggtagtgaaggcacaaaagtctctgcacatgtgtgttttagggaacactactatacttgctgagtttgccagtgaagaggagataagtcgtttctttgcacaaggccagtctctgactccttcccctggctggcagtcccttgggtctgggcacagccgactgggatccctagacagtcctcacagcatctcgaaccgtggagatatcaatcactggaacagtccaggagcttctggctctagctctggagaccttcatggcacttctctctggggcaccccaaattattcaacaagcttatggggtaaccccagtaatgagggcaggggcttgagcagtccatcacctgtccccgctttcctttctgttgatcagttaaacggagagcccatgtagcctttctttctatgacctcagctgatatttgctaaagcagcccattggctggactgttcaccctaaaaagaatatatatctgcaggctctgcagacagctcttctgcacacttcccacttttgtttcagcccaaaacatatcagtttgaaatacttgaatcacgcaggccaatattataatgtgaaaaaagaaaaaattctatatatatatttacacttccacgtttagtgctcttcatacgatagcggcgtacagtgagctgtgtgtaggttcccaattccatttccccccccccccccccccccatactttatattttcctgacagagttcgagctacatttcttatatattttttctttgcactggacggtgctccgtacattattatttttttttttttatttgagagaattagaagcaacagctcaagtgtaaactgtttactcttaacgtgtgtacttataagcagaaaccagataactgataatgctcattatttctaagatgccttgatgtacctaccttattgtggtattacaaagttctagctgcttcgcagcgtcagacctcagtggcgtattgcagagcaacaccccactgacagctcctgcgctgcaaagccgtaaccataactgacggttaaaacttagtttttaaagaaaaaaagagaaaaaaatgaaaagtattgcaccaggttttcgtgactaaacctaatagaatttagctctacagttttaataaaaaaataaaaattacaaaaaaatataaaaaaaaaatttatactgaaaaaatactaaaaaaaaaaggtggccacagctgtgacgtacgccctacatgtgccagtagggggcagcactttcaaaaaaaggctttgcattttctttttaagagattcccattgtttgggttctcttgtttacagaatgtttttttttttgttttgtttttattttatttttagttttttttcttttgttcgttcgatggggagggaaagtgggttcttaaaaaattactttttgttttgaaatcaatgtttactcttccatggatttaaggagataaaaaactaaaaaaaaaaaaaatactgaaaagtacttgtggtaaggatgagatctctctgggagtcgcagtgtttggtcgttttattttcccccgttttttcccccctttccccgcgtgtgtgcgattcccaacttgttaaataaaatggggaaaaatggctctcaggaacaagataaaataacactttccttctccccgctgtacatacatataaatatatacgagaatcacagaaatgcaacgtttagcactaaccgtgctgattactcaaagactttcctctctgccaaaaactcccccattaaagctttctaaagccaagattaaccgtaaaatataaaattaaaaaaaaatccaaaaaaaacaaactttcttttgctttgatgctgtgtgttagtgagtagcctggagatttgcccataaccagtatagactcgggtttggtgttcctttcagtggtcctgtgtctgcttcgtgacagtgttttatccatgttctcgttcgttcgtttttgtttgtttttttgtttttgttttttttttaaaaaaagccgattatttagtaactatgcacatttatgcacattgtaacagagtactgggctgatgatgacgatgattttggtttgtttgttttttgttttctggtgtgttgtataaaaaagaaaaaagtgtattttttaaatgtcaaagtcaatgattgcaaaaaggaacaagttacatttttgttgttgccataaatggtgttatgcttgttcggccgattcattcagacgctggacaagggtaaatatatgtaaatcaaacccccccaccccgtaatggttttcaccacagataaaggccaggagtaaccagcagaaattgccccaccatgttccactactgatgtaaccccgccccctccgtcggcaaaatactgcaaagcagtgccatttcctggtcaagctaagacatatcgtgtttgactttaaaaaaaaaaattccctggtcctttagtatgtggtggaaaagctcgctctttgcccccttcagtgccaggggtgcagtaaaaaaacaggaatttagtcgagtctccctgattcgatctctgggatatccaaagccagtggtatttttatctgattgtttttatgtgtatatagaaataatactctacaaggtgcattcgattttactgtaaaattccacgttcgttcttaaaaactgggtgcaatttgggttcccagggaccgattccactgtcccccctccccccacctacaatgtttgccattttctcattgccttgattcagattgctttgtgtcagctgatacaaatcaacttttgtggcttttttaactgtttacaatagagaatgattgtacaatttacaattttttttaattgtttttgatgaagttcgaacccgtcgagcgtcggcggcctcttccgcaaagtgaggcccaaccgtcgtgccccgaggggtcgagagagtagtgaaccgtggtttctttccgctgcttagcaatttttttttttttttttatttactttttttctgatttggaagctgtttttaatgcagtctgaaaagaaaacacaaagtagaaatcttaaatctgctcggactgcgtttagtatttgtgatgaataatcagaggagaagtgtaatattgtacaatgcgcggggccggcgcctcgccatgaaacgaatagccttagtttatctgggatcaccttagaggactttgccagaacatgtatctaactgtactatcatgcactaagctcggaacttgaatattctacaggacacagccgctcggaaactttgcatttgatatttaacacttgagtctctgcttttttagcgcctttatacctcagttcaagaacaacccagcagtgactgaatagcaaacctttccttttgtttttatttccttaaagcacatttgtcctgctttgtgcgctgcttcacggcacgccggtgttcctattgggtagctgaccttaccgactaagcgcgctgtgatcctcgtacgatagtcatttcaagacaagccttctgtatttcagtaaaacttattttacctgtaacttattacaaacagtactgtagtgaataatcgccctcttgctgttggaatgggttttttttgcgcggtattaggatgtatgaacccgcagcccctcagtccgttcagctacgaccccctagcgcccccccgagagccagcaggcgccgctgggagttgtggatgaacagcattgaaaggcattagggctgtcgcccttactcgacaaagtgttgcgttcggacagcaaaaggactaatgcgtcggagaggcttacaataaattgcaattcacgtctctctgtagggcttgagttaaatatataaagaaaatgtaaaaaaacaaaaaaaaaccaaagctagcttggtgacacttcaccggaggagattaaggtttctcattgattagctgccctccagacacttgaaatatggagtgttttatttacagcagttttattgtattgttcaaatgcttgaatgcttcctgtcttatttttgtttgttttatgaagcttgttatgtaattaataaagtatggttgctctta

//