LOCUS       XM_012961478           21835 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis trinucleotide repeat containing 6B
            (tnrc6b), transcript variant X5, mRNA.
ACCESSION   XM_012961478
VERSION     XM_012961478.3
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030680.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 18, 2019 this sequence version replaced XM_012961478.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21835
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="4"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..21835
                     /gene="tnrc6b"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 102 ESTs, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 80 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100498152"
                     /db_xref="Xenbase:XB-GENE-951772"
     CDS             387..5990
                     /gene="tnrc6b"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X4"
                     /protein_id="XP_012816932.2"
                     /db_xref="GeneID:100498152"
                     /db_xref="Xenbase:XB-GENE-951772"
                     /translation="

MREKHLKKAVPREKEQEREEQLMEDKKRKKEDKKKKEAAQKVTEQKTKVPEVTKPSSSQATAASLPGSSPSPPVNGGNNAKRVAVPNGQPPSTARYMPREVPPRFRCQQDHKVLLKRGQPPPASCMLPGGGAGTPPSTTAPGAGPGNAQPGAGTLLPGESGASTDSSSGAAATSNYANSTWGSGGPTSSGPTTNPPHAWDKVIVDGSDMEEWPCIAGVDAEPPSDNATDNNSASNSASEKGPPQGSTTSHKGRGGQGQQQQQQQPGSECIQGVWKSDPKAKPVPSSNPASEGVNRLGNWRNGGGSERAGSASGFSNFNPNTNPSAWPALVQEGNRKGNPESDSSFSGAQLGPVGLTSREQQSKMENAGSSFAGSGRESATTHHTDGPKNGNTNSTNSNTLNPPDNKGTAFGVGSMDSCRGSDSPAQSTGERKNGGIGSWGAGRGQSATGDANCGHSNSGSNGREREDARKAPSSHRPNGSRGESWESKSGNGSWGYSPQADLSEVKWSEGNKLGAGGASQGEWKQPAGHEDLKVGEWGGLNQGNSSTGAWDNQKGHSLSDNQGNTSSAACWGRAPSSAGSEAGGQSTGSNAKAGGSGGSGDSLNSSSRRSHRPALPDSQAALQTLLNRTDLDPRVLSNSGWGQTQIKQDASWESEEVPSRTEGKSDRGTEGWENVSQAKTSGGWGDAPSQSNQNKSGWGEPPVPAPSTQEWKDTKATGWNDYKNSPTGWVGGGGGGVVGARPEDKAVPGWNNESGGAAEPGWSTRQSNPGGGWSAGKNGWGGNGSEDMEPPKAPGGWEGSGSKSSSGWGEVGQNDVGSWGNGANSNPAPRTGWEETKRPQGGGNWGEAARPQLPWNKQQESTPSSATPSTWGGSQAPPPPGNGRSQPTSGWKGGPQPTVSKEEEPSGWEEPSSQSIGHKMDIDDGTAAWGDPNNYNYKNVSLWDKNAQAGPGQMAREQGISGTLANKAAPSVWSKNKGPPTDNGTSAWGEPTEPASGWGEGEESGPPTPGWGSAPQVNPSAMKSGTKSMQDGWGESDGPVTGTRHSSWDEEEEGGVWNSAGSQGSGSSHNSAGWGQGGKKPQIKGPLKGGSNDTWMNTLPKQFSNMGLLSQVDDPSTTKMDHPGGLPDKKFETDKRGVNLGDFNDMMRKERSGFRLNNSKEMGAADSGPYFEKLTLPFSNQDGCLGDEAPCSPFSPSPSYKLSPSGSSLPSVGLGAIGSGLNPQTFAARQGGNHGLFGNSGAQSRGMHNPVPSLNSSPNLRAQVPPQFLSPQVSASMLKQFPNSNMNPGLFNMGPQLSPQQIAMLSQLPQIQQFQLACQLLLQQQQQQQQQQQQQQLLQNQRKISQAVRQQQEQQQIARMVSALQQQQQQQQQQQQRQPGMKHSPSHPAGPKGHLDAVGLSDMQAKGHMPYGSGFGSSGMDYGTVGKEAGAESRFKQWTSMMEGLPSTVSQDTSLHKNGSIAPPVKNRGGSPYHQYDMLSTDALGGHGGPTAESWLPAKSPPSSKIGNKSINASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGPAPSPIVDTDHQLLQDTPTGSNSSLNTSLPSPGAWPFSASENIHSTSALSAKFGDYKSTWSPDPIGHNPSHHSNKMWKNQMSRNSPGLPRPPPGLTNNPKATNSPWNSTAPRSVRGWGGQDSRMASASAWSDGGSVRPSYWLILLNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQSALHMCVLGNTTILAEFATDEEVSRYLAQAQPPAPSAPGAGWQPLEVGPNHPAEPVGPALNLFGGTTGLGQWSSGGGGSDLSGVSLWGTPSSYTSSLWGVPSTEDAHRMGSPAPLLPGDLLGGGTDSI"

     misc_feature    3330..3677
                     /gene="tnrc6b"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    4617..5438
                     /gene="tnrc6b"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    5442..5690
                     /gene="tnrc6b"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     Region: RRM_TNRC6B; cd12712"
                     /db_xref="CDD:410111"
ORIGIN      

attggtaaccactctacgccagacaattcgtagctgctgtccaattgacgcattgcgagggcgtaatcgcggagagtcatgttgtggtgttgctaccagaaggaggagctagttgtggtgcagtcaggctggagagcgcggtgctggccgaggtgggagtaaccgggtaaccgggcttttgtctgttgctctgtacattgacagtgcccaggattctccaccttgctggctgtaattacaatctgacctggtgaaagggatcatggtttgacactcaacaaggaagaacattgaaagatcctttgatatctacatattattcacaagcagtacctgcgtgtgatttttgcacagttttgcacactttttcttttccatgcagacgaatgagggagaaacacttgaagaaagctgttcccagagagaaggagcaagaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaagaagaaagaagctgctcagaaggtcacagaacaaaaaaccaaagtgcccgaagtgacgaaaccaagttcaagccaagcgacggccgccagcctacctggcagctccccctcgccaccagtcaatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgcccagcaccgcccgctatatgcctcgggaggtgccgccgcgattccgctgccagcaggaccacaaagtgttactgaagcgtggacagcctcctccagcgtcctgtatgctgccggggggaggagcagggactcccccctcaaccactgctccaggggccggcccaggcaacgcacagccaggggcggggacactgctgccaggggaaagcggggcttcaacagactcatcatcgggggcagctgctacttcaaattatgcaaattccacttggggctcaggaggccccaccagcagcggccccaccacaaaccctccccacgcctgggacaaagtgattgtagacgggtcggacatggaagagtggccttgcatagccggcgtggacgcagagcccccttccgacaacgccacagacaacaacagtgcctcgaactcagcctcggagaagggacccccacaaggaagcaccactagccacaaagggcgagggggccagggccagcagcaacagcagcagcagcctggtagtgaatgtatccagggcgtctggaaatctgaccccaaggctaagcccgtcccgtcttccaaccctgcttcagagggtgtaaatagactgggaaactggagaaatgggggtgggtcagagagagcaggttctgcctctggtttcagcaactttaatccaaatactaacccatctgcttggcctgcccttgtccaggaaggcaacaggaaagggaacccagagtcagacagcagcttttctggcgcacaactcggcccagtgggtttgacctctcgggagcagcagtcaaagatggaaaatgcaggttccagctttgcaggatcgggcagggagtctgccacaacccatcacactgacggaccaaaaaatggaaacactaactctacgaactcaaatactttgaaccctcctgataacaagggaacagcttttggggtgggctcaatggattcctgccggggttcagactcccctgctcaaagcactggagaaagaaagaatggggggattggctcttggggagcgggaaggggtcagtctgccacaggagatgctaattgtggacatagcaactctgggagcaatggacgagagagagaagacgcaaggaaagcgccttcatctcatagacccaatgggtcaaggggggaatcttgggaaagcaaaagtgggaatggttcttggggttacagcccgcaggcagacctcagtgaagtgaaatggagtgaagggaacaaattgggggctggaggggcgtctcagggagaatggaagcagccagccgggcatgaggacttaaaggtgggagagtggggaggcttgaaccaaggaaactctagcactggagcatgggacaatcagaagggccactctctatcggataaccagggcaacacgtcatcagcagcctgctggggccgagcccccagctctgcaggaagtgaagctggggggcaaagcactggaagcaacgctaaagcaggggggagcggaggaagcggagacagcctgaactccagcagtcgacgttcacacagacctgccctcccagacagtcaggctgctcttcagactttactgaatcgcactgatttggatccccgggtgctgtccaactctggctggggccaaacccagatcaagcaagatgcatcatgggagagtgaggaagtgccctctcgaactgaaggcaaatcagaccgtgggactgaaggttgggagaacgtgtcccaagccaaaacctcagggggttggggggatgctcccagccaaagcaatcaaaacaagtcaggctggggggagccccctgtccctgcaccttcaacccaagaatggaaggacaccaaagcaactggctggaatgactataaaaacagcccaactggttgggttggtggaggaggtggtggggtggttggagcacgaccagaggacaaggcagttccaggttggaacaatgaaagtggtggggctgcggagcctgggtggagtactcgccagtctaatccaggaggtggctggtcagcaggaaagaatggttgggggggaaatggtagtgaggacatggagcctcccaaggcccctggaggctgggaaggctcaggaagcaaatcctcctctggctggggtgaagttggacaaaatgatgtgggttcttggggtaatggggcaaactcaaatccagctccacgaactggctgggaggagactaagaggccccagggaggaggaaactggggtgaggcagctaggccccaactaccctggaacaaacagcaggaatcaacgccatcttcagcaactcctagcacctgggggggctctcaggctcccccgccacctggaaatgggaggtcacagccaacttcagggtggaagggtggtccccagccaactgtttccaaggaggaagagccaagtggctgggaggaaccatcctcacaatccattggtcataaaatggacattgatgacggaacagcagcttggggggatcctaacaattacaattacaaaaatgtcagcctgtgggacaagaatgctcaagcaggccctgggcagatggctcgggagcaaggaatatctgggacattggcaaacaaggcagctccctcagtgtggagtaaaaacaaaggacccccaactgacaatgggacatcagcttggggtgagccaactgaacctgcttcagggtggggagaaggtgaggagtcgggtccaccaacaccaggatggggaagtgcaccccaagtaaatcccagtgccatgaaatctggtacaaaatctatgcaagatggctggggtgagagtgatgggccggtgacaggaacacgtcacagcagctgggatgaagaagaagagggtggagtctggaacagtgcaggttctcagggaagtggctcctcccacaactctgcaggttggggacaaggaggaaagaaaccacagatcaagggtcccttaaaaggagggagcaatgatacctggatgaacaccttgcccaaacagttctccaacatgggattgttgagccaagttgatgatccctctaccactaagatggaccatcctggcgggcttccagataagaagtttgagacagacaagcggggcgtgaatctcggggattttaatgacatgatgcggaaggaacggtctggcttccgtctgaacaattccaaagagatgggagctgcagacagtgggccttattttgagaagctgactttgcctttctccaatcaagacgggtgccttggggatgaggctccctgttcccctttttctccctcccctagctacaagctatctccctccggctcctcgctcccttccgtgggcctgggggctatcggttctggcctcaacccccaaaccttcgctgctagacaaggtggcaatcacggactatttggaaacagcggtgcacaatcgcgaggcatgcacaaccctgtgccatcgctcaactcctctcccaacctccgggcacaagtgcctccccagttcctctctccccaggtctcagcctccatgctaaagcagtttcctaacagtaacatgaatccaggacttttcaatatggggccacagctttcccctcagcagattgcaatgctgagccagcttcctcaaattcagcagttccagctggcatgtcagctcctcttgcaacaacaacaacagcagcaacagcagcagcagcagcagcaactccttcagaaccagaggaagatctcacaagcggtcagacagcagcaggaacagcagcagatagcacgcatggtaagtgccctacaacagcagcaacagcaacagcagcagcagcaacagaggcagccaggaatgaagcactctccctctcaccctgctggacccaaaggtcacttagatgctgttggactctcagacatgcaagccaaagggcacatgccatatggatctggttttggctcaagtgggatggattatggtacagtaggtaaggaggcgggagcagagtctcgatttaaacagtggacatccatgatggaggggctaccgtccactgtttctcaagataccagcctgcataaaaatggctccattgcacccccagtaaaaaatcgtggaggttccccctaccaccaatatgacatgttgtctacggatgctttgggagggcatggggggccaacagctgagagctggttacctgccaaatcacccccttcaagcaaaattggaaacaagtcaatcaatgccagctggcccccagagtttcagccaggagtgccatggaaagggatccaaaatattgatccagaatctgatccttat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