LOCUS       NM_203878               2777 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis caudal type homeobox 2 (cdx2), mRNA.
ACCESSION   NM_203878
VERSION     NM_203878.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Faas L and Isaacs HV.
  TITLE     Overlapping functions of Cdx1, Cdx2, and Cdx4 in the development of
            the amphibian Xenopus tropicalis
  JOURNAL   Dev. Dyn. 238 (4), 835-852 (2009)
   PUBMED   19301404
  REMARK    GeneRIF: during amphibian development the overall landscape of Cdx
            activity in the embryo is more important than the specific function
            of individual Cdx proteins
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   3  (bases 1 to 2777)
  AUTHORS   Reece-Hoyes JS, Keenan ID and Isaacs HV.
  TITLE     Cloning and expression of the Cdx family from the frog Xenopus
            tropicalis
  JOURNAL   Dev. Dyn. 223 (1), 134-140 (2002)
   PUBMED   11803576
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC063344.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC063344.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /map="2"
     gene            1..2777
                     /gene="cdx2"
                     /gene_synonym="cad2; cdx-2; cdx-3; cdx3; cdx3-like; cdxx;
                     xcad1; xcad2; Xcaudal2; xtcad1"
                     /note="caudal type homeobox 2"
                     /db_xref="GeneID:394817"
                     /db_xref="Xenbase:XB-GENE-483306"
     CDS             157..915
                     /gene="cdx2"
                     /gene_synonym="cad2; cdx-2; cdx-3; cdx3; cdx3-like; cdxx;
                     xcad1; xcad2; Xcaudal2; xtcad1"
                     /note="caudal type homeobox transcription factor, Xenopus;
                     caudal type homeobox transcription factor 3; caudal type
                     homeobox 3; cad1"
                     /codon_start=1
                     /product="homeobox protein CDX-2"
                     /protein_id="NP_989209.1"
                     /db_xref="GeneID:394817"
                     /db_xref="Xenbase:XB-GENE-483306"
                     /translation="

MYVSYLLEKDAAMYPGSMRAHPGLQNYPAAPQYPDYGSYHGMGLDHGAPSSGSSAGWITPYGPPRDEWGVHPTYSPGHTHINPSPVGNMAFSPDYSPAQVQGQPCVGVLPAGPPPQLSPGSEDGHRRHHYEWLRKPVSQASTGSKTRTKDKYRVVYTDQQRLELEKEFHYSRYITIRRKAELAANLGLSERQVKIWFQNRRAKERKITKKRIQQTQTGQNGPDTLSPEPSITHHMIPHATSNVGGLPNTVTQ"

     misc_feature    193..585
                     /gene="cdx2"
                     /gene_synonym="cad2; cdx-2; cdx-3; cdx3; cdx3-like; cdxx;
                     xcad1; xcad2; Xcaudal2; xtcad1"
                     /note="Caudal like protein activation region; Region:
                     Caudal_act; pfam04731"
                     /db_xref="CDD:461413"
     misc_feature    607..774
                     /gene="cdx2"
                     /gene_synonym="cad2; cdx-2; cdx-3; cdx3; cdx3-like; cdxx;
                     xcad1; xcad2; Xcaudal2; xtcad1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

cgggccaatgggcgtgcggcgctgggagtgagaggagcttgtcgggcagctcacaggctggggccgggaactcacgcaaaggggctgcttggggcatctctgctggcagccagaggggcacaggattatgcagctagctggcacccccctgccgccatgtacgtgagttacttgttggagaaggacgctgccatgtaccctggatctatgcgtgcccacccggggctacagaactaccctgctgccccccagtaccctgactatgggagctaccatggcatggggctagatcatggggcaccttcctctggttcctcagctggctggatcaccccatatggaccccctagggatgaatggggggtccatccaacttactcccctgggcacactcacattaacccttctcctgtgggcaacatggcctttagccccgactactccccagcgcaggtgcaggggcagccttgtgttggggtattaccggctgggcccccccctcagctatcgccgggctcggaagatgggcaccgacggcatcactacgaatggctcaggaaaccagtctcccaggcaagcacaggatccaagacaaggacaaaggacaagtatcgggttgtatacacggaccagcagcggctggagctggagaaggagttccattacagcagatatattactataaggaggaaggcagagctggcggccaatctggggctttcggagagacaggtaaagatctggttccaaaacagaagagccaaagaaagaaaaatcaccaagaaaaggatccagcagactcagactggccaaaatggaccagacactctcagcccagaaccttccattacccaccacatgataccacatgctacaagtaatgtggggggcttgcctaatactgtcacacagtgaaacccccttaacgttcgaccatgagcagctctcacagacactgactggcccactctctggatccccagctggttggagatggacccagatggcgctgtttgtgtgtggaagtcacttggaatgagatttcttagttggttggactgatggggagctagcccctggttatatatgccattggggctactaacagtaccacctgcctacccaggctcttcctggcacccaccctgtctataccactagggtctgctaacagtagcatacacctacccgggctcagactgctattcattgggtatgtacctctgggggttactgacagcaccctaggactcctgcgtactcatatagacttttacatgaaatcacttttctatgagattgaagggttaggccccaggctttaaaatatgcagttaattttaatatatttgtacataaaattgtaacaaaaatgatatttttatgtgatattgtatgtctcagggattatttgtttacttccatatgactgtgcaggatgggttcttacagaggtataggctggctgtctatatgtaatggcaactttgccagttaatgggaatagatgcaaggggggagaaatattctgttaaacattaaccatctttaaagcagatgataatatgtaatgcgcccagcagcctttcccctatccaatggaaagagaccctatcctgtaagccagggctgtccaactggaggcccgcaggctggatatggttctgtgaaggatttttatggtctctctagtctgctcaaacgctaacatttcctgtggcttgaagattagaggcctcattcactaagggttcttacacacaggcatttataagtgtattcccttcctgcaacactggtgtgtgtttcacccagggccctatctaccatatagatacccaatggcctgttcctagggtggcagatttaggggtgcctaaataggaacaatcattgtgcagaaaaaaaattcccctcaagcagacgcaccagacctacatacagccctggttccaccctacagcaacgcaggagttaactgaccccattcttctctatagggactgtaccacatgtaaacatgtaagtggaaataaaaactgtgccagtgtccaattttatctgcactcctgtgggcacagccctcatagggaaatctgacctgcacttacacctgtgggtaagagcccttacatacactctttcttggcacaaaaacacagacattgcacaaattaaaatgccaaatacagagaggttgcgcttctctaatgctgcttcttcaagtgaatgaggttctaggtgcaaggaacaggggagccagggaaccctactgttattattaggctttcatttcagctttttattaagcagttagatgggtcaggcaaatggcactgcagctttcagcattccagctactgggagttgtagttatgtccccagttaacacaacagcttgtctctctcctgcgcactatagtaaagcaatcatgttaagagaagtttacaccagaactcagggcatttgcacctctccctgctggcatttggctgtgcacattgttcgggtcggcaatgaagattaatggagaatcaatacccgggaatcctgcagcaaggaactgtgaattaatgtgctatgtgtgttttttttaccctctctgtatttgcaaagaaactaaagaaagtttgaaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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