LOCUS       NM_203531               1283 bp    mRNA    linear   VRT 16-JUN-2023
DEFINITION  Xenopus tropicalis VENT homeobox 2 gene 1 (ventx2), mRNA.
ACCESSION   NM_203531
VERSION     NM_203531.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Polli M and Amaya E.
  TITLE     A study of mesoderm patterning through the analysis of the
            regulation of Xmyf-5 expression
  JOURNAL   Development 129 (12), 2917-2927 (2002)
   PUBMED   12050139
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY187016.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY187016.1, CR848273.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028291, SAMD00028299
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1283
                     /gene="ventx2"
                     /gene_synonym="ventx2.1; ventx2.1-a; ventx2.1-b; vox;
                     vox1; Xbr-1a; xom; xvent-2; xvent-2b; Xvr-11b"
                     /note="VENT homeobox 2 gene 1"
                     /db_xref="GeneID:394456"
                     /db_xref="Xenbase:XB-GENE-919664"
     exon            1..445
                     /gene="ventx2"
                     /gene_synonym="ventx2.1; ventx2.1-a; ventx2.1-b; vox;
                     vox1; Xbr-1a; xom; xvent-2; xvent-2b; Xvr-11b"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..1008
                     /gene="ventx2"
                     /gene_synonym="ventx2.1; ventx2.1-a; ventx2.1-b; vox;
                     vox1; Xbr-1a; xom; xvent-2; xvent-2b; Xvr-11b"
                     /note="vent-2"
                     /codon_start=1
                     /product="VENT homeobox 2 gene 1"
                     /protein_id="NP_988862.1"
                     /db_xref="GeneID:394456"
                     /db_xref="Xenbase:XB-GENE-919664"
                     /translation="

MNTRTTTGKMTKAFSSVEWLAQSSRRSHKEQPSKGDQRYSPYPSPSLPSWNSDVSPSSWNSQLSPVAGSAQVSPCPGSAQYSSDSELSLYSNEDEDLFCEKDLNTPSTPGDNGLLHRDTATHEYSGMVSVPANTPRTTSNEDAAKSGYSTSTDSGYESEASRSSSTAPEGDATVSLSPNDTSDEEGKLGRRLRTAFTSDQISTLEKTFQKHRYLGASERRKLAAKLQLSEVQIKTWFQNRRMKYKREIQDGRPDSYHPAQFFGVYGYSQQPTPVFQHAVQQPYPGYSPLMETLPGTMPYAMHPPAMDSLNHFNSPPFQMFYMPQQHLGQPLAY"

     misc_feature    574..744
                     /gene="ventx2"
                     /gene_synonym="ventx2.1; ventx2.1-a; ventx2.1-b; vox;
                     vox1; Xbr-1a; xom; xvent-2; xvent-2b; Xvr-11b"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            446..702
                     /gene="ventx2"
                     /gene_synonym="ventx2.1; ventx2.1-a; ventx2.1-b; vox;
                     vox1; Xbr-1a; xom; xvent-2; xvent-2b; Xvr-11b"
                     /inference="alignment:Splign:2.1.0"
     exon            703..1279
                     /gene="ventx2"
                     /gene_synonym="ventx2.1; ventx2.1-a; ventx2.1-b; vox;
                     vox1; Xbr-1a; xom; xvent-2; xvent-2b; Xvr-11b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cacataatgaacacaaggactactacaggaaagatgaccaaagctttctcttcagtagaatggcttgcccaaagcagccggagatctcacaaagagcagcccagcaaaggggatcagcgatattcaccgtacccaagcccatccctgccttcctggaacagtgatgtgtccccttcttcatggaacagccagctgtctccagttgcaggcagtgcccaagtctcaccgtgccctgggagtgcacaatattcctcagacagtgaattatctctctattccaatgaagatgaagacttattctgtgaaaaggaccttaataccccttctacccctggggacaatggattgctacacagggacacagccacacatgagtactctggaatggtttcagtgccagcaaatactcccagaaccacttccaatgaagatgctgctaagtctggctacagcactagcactgactcaggctatgaaagtgaagcaagtcgctccagctctacagcccctgaaggagatgccaccgtatccctgagccccaatgatacttcagatgaagagggcaagttgggccgaaggttgcgaacagctttcaccagtgatcagatctccactctggagaagacttttcagaaacacagataccttggggcttctgagagacggaaactcgcagccaaactccagctttctgaagtccagattaaaacctggttccagaaccgcaggatgaaatacaaacgggaaatccaagatggcagacctgactcataccacccagcccagttctttggtgtgtacggctattcacagcagcccactcctgtattccaacatgcagtgcaacaaccctacccaggttatagcccactaatggaaaccctgcctggcaccatgccctatgccatgcacccccctgccatggactctctgaatcatttcaactctccaccttttcaaatgttctacatgccccaacagcaccttgggcagcctctggcctactaagaagggcctaagattggctgtttgttagctattagcctgacgccaattcaaaggtctaaaccaaaccaaagactggacttttccatgggctactattctcccataggacataataaatgcactagaaatcgctattggcgagatgtttacagaattgctggctactattgggccatgtgtaatgttatttacatgattttattcacattgaataatatattgtctattctatgagtaataacatttataataaatgtaagtaatatttaaaaaaa

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