LOCUS       NM_001199939            2850 bp    mRNA    linear   VRT 22-DEC-2022
DEFINITION  Xenopus tropicalis testis and ovary specific TOPAZ 1 (topaz1),
            transcript variant 1, mRNA.
ACCESSION   NM_001199939 XM_002937848
VERSION     NM_001199939.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2850)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL895749.2, EL833478.1, DN087003.1, BX756929.1, BX770256.1,
            DT402254.1, DT402253.1 and EL833479.1.
            
            On Jan 14, 2011 this sequence version replaced XM_002937848.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMD00028290,
                              SAMD00028291 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                AL895749.2         1-28
            29-145              EL833478.1         1-117
            146-462             DN087003.1         1-317
            463-550             EL833478.1         278-365
            551-1259            BX756929.1         126-834             c
            1260-1341           BX770256.1         128-209             c
            1342-2049           DT402254.1         1-708
            2050-2437           DT402253.1         406-793             c
            2438-2850           EL833479.1         1-413               c
FEATURES             Location/Qualifiers
     source          1..2850
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..2850
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="testis and ovary specific TOPAZ 1"
                     /db_xref="GeneID:100380130"
                     /db_xref="Xenbase:XB-GENE-5887135"
     exon            1..112
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            113..237
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    153..155
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="upstream in-frame stop codon"
     CDS             189..2678
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="isoform 1 is encoded by transcript variant 1;
                     testis and ovary specific PAZ domain containing 1"
                     /codon_start=1
                     /product="protein TOPAZ1 isoform 1"
                     /protein_id="NP_001186868.1"
                     /db_xref="GeneID:100380130"
                     /db_xref="Xenbase:XB-GENE-5887135"
                     /translation="

MFYTQLLFHCYRSSTHDVVPDDPELFGTPEDPYISPICNADNKENNKRNNLSALMCNLQEQESAHINESTNDASPEENVEERSTYFAKVITDLEVNDDPLIIHNTLEKNSEDFYDGGQFDFEAFRDLDADKEIKYAEKNSSESGSSFEESLSKDTSPGSSHSNSRRWRRDPSHTYKPMHWMNDFRYSGKCMGLTDVITLDQKEQRNIDNLFYDFTPIQKTFLPIRYCKYFFNTFRGCIKPDCMYQHVPFQRDEKVCMEVIHKLVNENHTTLLKRAVWIFTAYYRMYMPGVHYDSNLLTKMLRALYVRQMWGDVFQLLETGANVKILPSSEMLIRLFENIGSTGLTAAVPSLVDVFCKLVEAGMMMKPEQINMLITTLNNLQATKNYISVILDIKTRIEMQLSEKNWLCNLDIAVAEVGHCKEKNDWKKLGTLYLNLRTGCENVTDLKKFSNCIVGALQKVPRNDKSEIPYCDFADTVYKDAQLSEIDKNILGRIGISIMYHYYRNKQSQKGKRVLRKLQEMQINFTVLKGLTGEESKATRCQVVNTAVEIFLNCEYLNGALGVLRESEWIINTQVWPCERMDVLKRHNLLCTIAQKTLNKNMFDVCLEVLQNLPGLQCSLTDVDVSQYSLLFNKLLSSCIENNTLGVSSTVIDFMIAKKIPLDFFLLRALITSLGRSCLWLRARELYKCAVLLGCYPPMEGNLYRKVLFIPSFLTEIEMLLSIEIFMVSNASSIQSPGGSHQTLQIILKRCEEERVPNKDYQRGKASYQDAVDRLIQASRLSTPRLFIKHLTVNNANEQVYILDYGSSLKWLHENMKWAGKVWLFQGKI"

     misc_feature    1437..1964
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /note="Putative aspartate racemase; Region:
                     Asp_Glu_race_2; pfam14669"
                     /db_xref="CDD:464250"
     exon            238..394
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            395..462
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            463..584
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            585..625
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            626..735
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            736..824
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            825..950
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1014
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1166
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1259
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..1375
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1376..1442
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1443..1617
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1618..1718
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1719..1884
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            1885..2049
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            2050..2253
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            2254..2437
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
     exon            2438..2839
                     /gene="topaz1"
                     /gene_synonym="c3orf77"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cggagctgaatttgcgacttccggaagcgcgccgaatgtgggtgttcctgtagaaggcaggccgcggaattccgttgcggagaattatttacagagtgggagctcgggtttggacagcagaaatgctgtggattcccttgtgtttcagagcataagaggaaaaaggagagtgcacagcagaaaactttatgttctacacacaactgttatttcactgttacagatccagcacacacgatgttgttccagatgatccagagctttttgggactcctgaagatccttacataagtccaatttgtaatgctgacaacaaagaaaataataaacggaataatctgagtgcattaatgtgtaaccttcaggaacaggagagcgcccatatcaatgaaagcacaaatgatgccagccctgaggaaaatgtagaagagagaagtacatattttgcaaaagtaatcactgatctagaagttaatgatgatcctctcatcatacataacactttggaaaagaacagtgaagatttttatgatggtggacagtttgattttgaggcgttcagagatcttgacgcagataaagagattaaatatgctgaaaagaattcatctgaaagcggaagcagttttgaagagtccttgtccaaggatacttctccggggtcctctcattccaatagccgtcgttggagaagggatccctcacatacctataagcctatgcattggatgaatgatttcagatactctggaaaatgcatgggattgacggatgtgattactttggatcagaaagaacagaggaatattgataatctcttttacgattttacacctatacagaagacctttttgcccattagatactgcaaatatttttttaatactttccgtggatgcattaaaccagattgtatgtaccagcacgtaccattccaaagggatgaaaaggtgtgcatggaggtgattcacaaacttgtgaatgaaaatcacacaacattattaaaacgtgctgtttggatatttactgcctactacagaatgtatatgcctggtgttcattatgactcaaatctgctgaccaaaatgctccgtgccttgtatgttcgtcagatgtggggagatgtatttcagttgttggaaactggtgccaatgtcaaaatattgccctcctctgaaatgcttatcaggttatttgaaaatattggctctacgggattaacagcagctgtacctagtttagtggatgtattctgcaagcttgtggaggctggaatgatgatgaagccagagcaaatcaacatgttaataacaacactgaataatctccaggcaacaaaaaattatatcagtgtcattttagacataaaaacaagaattgaaatgcagctttcagaaaagaactggctgtgtaacttggatatagcagttgcagaagttgggcattgtaaagaaaaaaatgattggaagaaactaggaacattatatcttaatctgcgtacagggtgtgagaatgtgactgatcttaagaagttttctaattgcattgtgggggcgcttcagaaagtgccaaggaatgataaatctgaaattccatattgtgactttgcagacacagtgtacaaagacgcccaactaagtgaaattgacaaaaacattttgggaaggattggaatatccatcatgtatcactattacagaaataaacaatcgcaaaagggaaagagggtgctcagaaaacttcaggaaatgcagattaatttcacagtcctaaaaggactcacaggggaagagagtaaagctacgcgctgtcaagttgtgaacacagctgtagagatcttcttgaactgtgaatacttaaatggtgcactgggggttctacgagagtcagagtggatcattaacacacaagtgtggccatgtgaaagaatggatgtgctgaaacgacataacctgttgtgtacaattgcacagaaaacactgaataaaaacatgtttgatgtgtgtcttgaggtccttcagaatctgccaggactgcagtgctcattaacggatgtggacgtctctcagtacagcttgcttttcaacaaacttttgtcatcctgcatagaaaataatacacttggtgtatcctcaactgtgatagattttatgattgcaaaaaaaataccacttgactttttcttactgagagcactaatcacatccttgggacgaagctgtctatggctcagagcaagagaactttataaatgcgctgttttgttgggttgctacccgcccatggaaggaaatctgtatcgtaaagtgctcttcatcccctcattccttactgagatagaaatgctgttatccattgaaattttcatggtgtcaaatgccagtagtattcagtcaccaggaggcagccatcagactctgcaaatcattctcaaaagatgtgaagaagagagagttccgaataaagattatcaaagaggtaaagctagctatcaagatgcagtggaccggctgattcaggcctctaggctatcaacaccaagattattcataaagcacctgactgtcaataatgccaatgaacaggtttatatccttgattacggcagctctctcaaatggttgcatgaaaacatgaaatgggctgggaaagtatggctttttcaggggaaaatataacttgatatcaggaggtttaactaagcaagtaatgaaaattttaaattaaagtgtctgtttaatttgttttattaatgtgtattttccacttttattgtccttatctgttgacaaaatggtttaagactgtacacaaaataaaatatatagtataaggaaaaaaaaaaaaaaa

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