LOCUS       NM_001126621            1728 bp    mRNA    linear   VRT 16-JUL-2020
DEFINITION  Xenopus tropicalis provisional ortholog of tripartite motif
            containing 25 (XB5762393), mRNA.
ACCESSION   NM_001126621
VERSION     NM_001126621.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC158542.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158542.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..1728
                     /gene="XB5762393"
                     /note="provisional ortholog of tripartite motif containing
                     25"
                     /db_xref="GeneID:100145105"
                     /db_xref="Xenbase:XB-GENE-5762394"
     exon            1..1704
                     /gene="XB5762393"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1615
                     /gene="XB5762393"
                     /codon_start=1
                     /product="uncharacterized protein LOC100145105"
                     /protein_id="NP_001120093.1"
                     /db_xref="GeneID:100145105"
                     /db_xref="Xenbase:XB-GENE-5762394"
                     /translation="

MAAADLRDELSCSICLSIYTDPVMLPCGHNFCRGCVGSVMDAQEGLGAYSCPECRAEYQERPALPRNRALGNIAARFCPTEPGETGIPCTYCVLSPVPAVKSCLHCEASLCDTHLRMHSKSEKHILIEPTMHLGDRKCSVHEELLKYYCCEDSACICVSCCLAGGHRGHRVELLSEASEKKKEKLRKVLEKLSPEREETERGAQRLQERRREGAEVAAGETERVTALFRGIREELEALEKRLLSDISRQKEELTLTLTELIQQLEIKKDELSRKIRHIEELCNMAAPLTVLQEQWESHGAAFCGAEGADTEGREREGIKVPAVGDLDVGRISETLLTGLAGIVTGVKGRIYGPEATDLVLDINTAHNRVSVSGDRKSASYSLTELHYPQSPERFQDESQALSSRSFPSGRHYWEVEGSESGGWGVGVAYPSIERGGEQSGIGENNKSWGLYRGNNNRYSVIHDSKWTQLPHVPSCRRIRIWLDYEAGRLSFYELSEPIRHLHTFTASFTEPLHAAFWVLGEGVWVRIIHYVLEGM"

     misc_feature    20..235
                     /gene="XB5762393"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein TRIM25 and similar proteins;
                     Region: RING-HC_TRIM25_C-IV; cd16597"
                     /db_xref="CDD:438259"
     misc_feature    order(29..34,44..46,53..55,92..94,161..172)
                     /gene="XB5762393"
                     /note="ubiquitin binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:438259"
     misc_feature    order(29..31,44..61,98..100,110..112,119..124,131..133,
                     155..157,161..166,170..172)
                     /gene="XB5762393"
                     /note="E2 binding site [polypeptide binding]; other site"
                     /db_xref="CDD:438259"
     misc_feature    266..394
                     /gene="XB5762393"
                     /note="B-box-type zinc finger superfamily; Region:
                     Bbox_SF; cl00034"
                     /db_xref="CDD:469587"
     misc_feature    413..553
                     /gene="XB5762393"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing proteins, TRIM16, TRIM29, TRIM47 and
                     similar proteins; Region: Bbox2_TRIM16-like; cd19769"
                     /db_xref="CDD:380827"
     misc_feature    548..931
                     /gene="XB5762393"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; Region: CC_brat-like;
                     cl29238"
                     /db_xref="CDD:475168"
     misc_feature    1079..1591
                     /gene="XB5762393"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     (TRIM) proteins, including TRIM14-like, TRIM16-like,
                     TRIM25-like, TRIM47-like, TRIM65 and RNF135, and
                     stonustoxin; Region: SPRY_PRY_C-I_2; cd12891"
                     /db_xref="CDD:293949"
ORIGIN      

ctcagcaatggcggctgctgatctgagagacgagctgagctgctccatctgcctgagcatttatactgatccggtaatgctgccctgtggccataacttctgccggggctgcgttggcagtgtgatggatgcccaggagggattgggggcttattcctgccctgaatgcagagccgagtatcaggagcgccccgccctgcccaggaacagagctctggggaacatagcagcgcggttctgtccgactgagccgggggagactgggattccctgcacctactgtgtcctctcccctgtacccgctgttaaatcctgtctgcactgtgaggcttctctgtgtgatacccaccttaggatgcacagtaagtcagagaaacacatcttaatagaacccacaatgcacctgggggacaggaaatgctcagtccatgaagaactcctgaaatattactgctgtgaggattctgcctgtatctgtgtgtcctgctgcctggccggggggcaccggggccacagggtggagctgctgagtgaggcctctgagaagaagaaagagaaactgaggaaagttctggagaaactgagcccagagagagaggagactgagagaggagcccagaggctgcaggagcgcaggagagaaggggcagaagtggcagccggtgagacagagagagtcactgccctgtttaggggcatcagggaagagctggaagccctagagaagcgactcctgagtgacatctccaggcagaaagaggagctcacactcacactcactgagctgatccaacagctggaaataaagaaggacgagctgtccaggaagatccggcacattgaggagctgtgcaacatggcagctccactcactgtcctacaggaacaatgggaatcccatggggctgccttttgtggggctgagggggcagatactgagggcagagagagagagggtataaaggtcccggctgtaggggatctggatgtgggtcggatctcagagacattactcacaggcttagctgggattgtgactggggtaaagggaaggatctatgggccggaggctacagacctggtactggatataaacacggctcataatcgtgtatctgtatcaggggacaggaaatctgcttcctactcactaacagaactacattacccacaatccccagagagatttcaggatgagtctcaggctttaagcagcaggagttttccctcagggcgacattactgggaagtggagggcagtgaatcagggggctggggggtaggggtggcctatcccagtatagagaggggaggggagcagtctggtattggggagaataacaagtcctggggtttgtacagagggaataataacagatattcagtgatacatgacagtaaatggacacagttaccccacgtcccttcctgcaggagaatcaggatctggttggactatgaggccggacgcctgtccttttatgagctgagtgagccaatcaggcacttacacaccttcactgcctccttcactgagccccttcatgctgcattctgggtattgggggagggtgtttgggtgagaatcattcactatgtgctggagggaatgtagataagagtgttcccccatattatggggcattgccctaaatggactgacttttggaggaatattaaagggacatactgtgtgaaaaataaaaaaaaaaaaaaaaaaaaaaaaaa

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