LOCUS       NM_001126518            2549 bp    mRNA    linear   VRT 04-JUL-2021
DEFINITION  Xenopus tropicalis dynein, axonemal, intermediate chain 1 (dnai1),
            mRNA.
ACCESSION   NM_001126518
VERSION     NM_001126518.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158249.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158249.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..2549
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="dynein, axonemal, intermediate chain 1"
                     /db_xref="GeneID:100144946"
                     /db_xref="Xenbase:XB-GENE-6455855"
     exon            1..168
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    158..160
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="upstream in-frame stop codon"
     exon            169..241
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..2326
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="cytoplasmic dynein"
                     /codon_start=1
                     /product="dynein axonemal intermediate chain 1"
                     /protein_id="NP_001119990.1"
                     /db_xref="GeneID:100144946"
                     /db_xref="Xenbase:XB-GENE-6455855"
                     /translation="

MPTKQRQNVAAVGQIPKPNVLKPSKAASKKKDDDDSTDVGDGVEEWTQAKTLIKPRDQLELTEAELNEEFTRILTANNPHAPQNIVRYSFKERAYKAVSMVEQLAVHFSLDGNLLHKDSDEARRQKLRMGGLEGPTHIDSPAAEPADNMETEEHPGTPAAGDEGADGEDAPKLKERKLTNQFNFSERASQSLNNPLRERACQTEPPPREVFSASANQWEIYDAYVEELKKQQKLKEKPKAPASKKEEETPSRRRMGATESQSDDISKLAKSCKIMERMVNQNSFDDVTQDFKYFEDPADEFRGQEGTLMPLWKFQQEQAKGLAVTALCWNPNYKDLFAVAHGSYDFMKQNRGLVLFYSLKNPSFPEYLFSADSGVMCLDLHRDHPYLVAAGFYDGNVAIYNLKADTPQPSFISSAKSGKHTDPVWQVKWQRDDMDNNPNFFSVSSDGRVVSWTLVKDELVHSDVIKLSFSGTTASGPEGLRLHIHGSGTAFDFHWQTEYLYLVGTEEGNIHKCSKAYSSKFLDTYEAHSMAVDTVRWNPFHPKVFISCSSDWTVKIWQHDVKSPMFVFDLSAPVADVAWAPYSSTVFAAVTVDGKVHVFDLSVNKYEALCQQPVVAKKKTKLTHVEFNPVYPILIVGDDRGYVTSLKLSPNLRKMPKEKKGQEAQKGPEVEVAKLDKLLALVREPDIQQGETESPTHRAEY"

     misc_feature    1190..1330
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    <1244..2020
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:475233"
     misc_feature    1346..1459
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1490..1663
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1685..1798
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1814..1918
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     misc_feature    1940..2065
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /note="WD40 repeat [structural motif]; Region: WD40
                     repeat"
                     /db_xref="CDD:293791"
     exon            242..313
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            314..412
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            413..493
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            494..620
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            621..694
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            695..811
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            812..871
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1003
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1088
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1206
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1250
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1498
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1499..1588
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1589..1676
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1756
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1757..1905
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            1906..2005
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            2006..2191
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
     exon            2192..2533
                     /gene="dnai1"
                     /gene_synonym="cild1; dic; ics; ics1; pcd"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cagcggggtaccctgcgccccacattattcccctcacaccctctagccgagccccaaatctccatgcgggattagggcaccgcaccaactatgtcggaactgaacttgctgcaacgtcaccatagcaacagctatcaacttccgggttgtgtcgctataacaacggggaaccagagtgagaggggctccagccttggcacagagagagtgtgggagagccatgccaactaagcagcgacagaacgtggcagctgtgggtcagatcccgaaaccaaatgtcctgaaaccttctaaggcggcatccaaaaagaaggatgacgatgactccacagatgtcggagatggagtagaagaatggactcaggccaagactttgattaaaccccgcgaccaactggaactgacagaagcagaactgaatgaagaatttactcgcattttgacagccaataatccccatgctccccagaacatcgtcagatacagctttaaggagcgagcgtacaaggcggtgagcatggtggaacagctggccgtgcacttctccctggatgggaacctcttgcacaaggactccgacgaggcccgcaggcagaaactgcgtatgggggggctggaagggcccactcacattgactcccctgcagcagaaccagcagacaatatggagacagaggagcacccaggaactccggccgcaggggacgagggggctgatggagaagacgcacccaaactcaaggaacgaaaactgaccaatcagttcaactttagcgagagagcctcccaatctctgaacaacccactgagagaacgtgcctgtcagacagaaccgcccccgcgggaagtcttttctgcctctgccaatcagtgggagatctatgacgcttacgtggaggagctgaagaagcagcagaagctgaaagagaagccgaaggctccggcctctaagaaagaagaagagacgccatcccggcgcagaatgggcgccaccgaatctcagagtgatgacatcagcaagttggcgaaatcgtgcaaaatcatggagaggatggtgaatcagaactcgtttgatgatgtcactcaggacttcaaatatttcgaggatcctgcggatgaatttagaggccaagagggaacattgatgccactgtggaagttccagcaagaacaagccaaggggttggcagtgactgccctctgctggaacccaaattacaaggatctctttgcagttgcccacggctcttatgactttatgaaacagaaccgaggcttggtgctcttctactcgctcaagaacccctcgttccccgaatatctgttcagcgcagacagtggcgtcatgtgcttggacttacacagagaccacccctatctggtggccgccggcttctatgatggcaacgtggccatttataatctcaaagcagacacgccacagccaagtttcattagttcggcaaaatccggcaaacacaccgaccctgtgtggcaggtgaagtggcagagagacgacatggacaataatccaaactttttttccgtctcgtcagacgggagggtggtgtcctggacattagtaaaggacgagttggttcactccgatgtcatcaagttgtccttcagtggaacaactgcaagtggccctgagggtctcaggctccatatacatggtagcggaacagcctttgacttccactggcagactgagtacctgtacctcgttgggactgaagagggaaacatccataagtgctcgaaggcttactccagcaagttcctggacacgtacgaggcacacagcatggcggtggatacggtgcgctggaacccttttcaccccaaggtcttcatctcctgcagctctgattggacagtcaagatctggcaacatgatgtcaagagcccaatgtttgtgtttgacctgagcgccccggtggcagatgttgcctgggccccgtactcttccacggtgtttgctgctgtcactgttgatgggaaggtccatgtgtttgatttgtccgtaaacaaatacgaggcgctgtgccaacagccagtggtggccaagaaaaagaccaagttaacccacgtagagtttaaccctgtatatcccatacttattgtgggggacgaccgggggtacgtcaccagcctgaagctgtcgcccaatctgcgcaaaatgcccaaggaaaagaaaggccaggaggcccagaaggggccagaggtggaggtggccaaactggacaaactgcttgcccttgtgagagaacccgatatccaacagggggaaaccgagtctccaactcacagagcagagtattaggcctccgggtcccaagtgcccaggtataaacttgtcttctgggccagtgagggccaatagccgggggccacaggatggacattggtgattgatttggccccagatttgccaggggccccccttctttatctccagcatttggccgactgtaaaaatgtatttgtctcacactcacatctcttcctattaaagtaaatgtttggtttaaaaaaaaaaaaaaaaa

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