LOCUS       NM_001102909            1499 bp    mRNA    linear   VRT 02-OCT-2024
DEFINITION  Xenopus tropicalis claudin 15, gene 1 (cldn15), mRNA.
ACCESSION   NM_001102909
VERSION     NM_001102909.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC135939.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC135939.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00862019 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="3"
                     /map="3"
     gene            1..1499
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /note="claudin 15, gene 1"
                     /db_xref="GeneID:100124975"
                     /db_xref="Xenbase:XB-GENE-994817"
     exon            1..537
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    192..194
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /note="upstream in-frame stop codon"
     CDS             321..1022
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /codon_start=1
                     /product="claudin-15"
                     /protein_id="NP_001096379.1"
                     /db_xref="GeneID:100124975"
                     /db_xref="Xenbase:XB-GENE-994817"
                     /translation="

MSVILETIGFFFGVIGSTMLGITLFNANWRVSSVDGNVITTSTLFENLWMSCATDSTGVYNCREFPSLLALSGYLQASRALMITSLVFGFFSCLLGMIGLQCTKVAEDNPVVKGKLATAAGAISIFGGLCAGIAVSWYAFNITKDFFNPLYPGTKYEIGPALYLGWSGALLDIVGGAILCCSYKTQVSAAKNKYTYNYRAPMTVSSAKAAPQATLPRYESSNSICKYGKNAYV"

     misc_feature    321..857
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            538..702
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /inference="alignment:Splign:2.1.0"
     exon            703..784
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /inference="alignment:Splign:2.1.0"
     exon            785..895
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1495
                     /gene="cldn15"
                     /gene_synonym="cldn15.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggcagatacggagagcaaggagagagtcacagagcactgacatcagagatcacagcgagacagataaagaagagagcagtctgataagatacaaacaggacaggttagagaagcggcagtgagacgtacaggcagtgagagaggcatggaaggcacaaggttgggataaagtggccactgaatagcaggattagccgagggaacgtggcaacagagtgcaagcagttgggcaagagagtgagaggcacctgggcaagagagtgcaagcagctgggcaagagagaacttctgacttgcacccttcaactcaactcaaagacatgtcggtcattttggagacaatcggtttcttctttggggtgataggatcgaccatgttggggatcaccctcttcaatgccaactggcgggtgtcatcggttgatggaaatgtcataaccacctccacgctctttgagaacctctggatgagctgcgccacggactccaccggggtctacaactgccgagaattcccatccttgctggctctctcaggatatcttcaagcctctcgggcactgatgatcacatcgctggtttttggatttttttcctgcctgttggggatgattgggttgcagtgcaccaaggttgcagaagacaaccccgtggtaaagggcaagctggctactgcagcaggagcaatctcaattttcggaggactctgcgccggtatcgctgtttcatggtatgcgttcaacatcactaaggatttcttcaaccctctttacccaggaacaaagtatgagatcgggcctgcactttaccttggttggtcaggggcgcttttggatatagttggtggagctatactctgttgttcctacaagactcaggtgtctgcagccaaaaataaatacacgtacaactatcgagcgccaatgacggtgtcctctgctaaggccgcacctcaagctactctacctcgatacgaatccagcaacagtatttgtaaatacggaaagaacgcttatgtatagaacttccgaggcttggaagggctttaccatcgctggcttcttccaggctcggccaatgaggatattccatccatattacatcctatcacgacagtgcttccaacgcccttggctcatggtccaccggcattgtcattctacgtatttgtaaatagttttgcactattctgaaagaaaccaaaaaaacattcacagtgaatggcatttctatgacgggaaaccttgggaacgttgccggagaagtccatggcctcaatgagaagaaagaagagacgggagcggcacaaagtatccaaaaagcttcccgcttgagatatttggactctatcatggcgtactttatctcacaaaaacattttctgctccttttttttaaacaaactatccattttcttcggcttctatgacagttgaagacttcagcgagtagtttgaggccgtttgatgctgtaaaacgttaataaaaaaaaaaaaaaa

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