LOCUS       NM_001079097            3299 bp    mRNA    linear   VRT 16-JUN-2023
DEFINITION  Xenopus tropicalis glutamate ionotropic receptor kainate type
            subunit 5 like (grik5l), mRNA.
ACCESSION   NM_001079097
VERSION     NM_001079097.2
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Fierro AC, Thuret R, Coen L, Perron M, Demeneix BA, Wegnez M,
            Gyapay G, Weissenbach J, Wincker P, Mazabraud A and Pollet N.
  TITLE     Exploring nervous system transcriptomes during embryogenesis and
            metamorphosis in Xenopus tropicalis using EST analysis
  JOURNAL   BMC Genomics 8, 118 (2007)
   PUBMED   17506875
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC122905.1,
            CN087641.1, CR564514.1, CX414067.1 and BX732498.1.
            
            On Oct 25, 2011 this sequence version replaced NM_001079097.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC122905.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06679859 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-407               BC122905.1         1-407
            408-408             CN087641.1         361-361
            409-1902            BC122905.1         409-1902
            1903-1903           CR564514.1         190-190
            1904-2117           BC122905.1         1904-2117
            2118-2263           CX414067.1         203-348
            2264-2810           BC122905.1         2264-2810
            2811-2879           BC122905.1         2825-2893
            2880-3239           BX732498.1         70-429              c
            3240-3299           BC122905.1         3280-3339
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..3299
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /note="glutamate ionotropic receptor kainate type subunit
                     5 like"
                     /db_xref="GeneID:780020"
                     /db_xref="Xenbase:XB-GENE-5860197"
     exon            1..105
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            106..140
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            141..208
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..1590
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /note="glutamate receptor KA2"
                     /codon_start=1
                     /product="glutamate receptor, ionotropic, kainate 5
                     precursor"
                     /protein_id="NP_001072565.1"
                     /db_xref="GeneID:780020"
                     /db_xref="Xenbase:XB-GENE-5860197"
                     /translation="

MEKSLLLLFAVTLLSVGCTDAGESKGSIHKEKERSKRQALKHLTVTTIMEQPFSMKTESGMEGFCIDLLSELAQSLGFNYTIKEVKDGRYGAKDQDGNWNGMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISILLRKDDVSENSYLFGFLTPFSKETWIGILVAYVVTSLCLFLVGRLSPCEWTELSTEQNNFNFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTNIQTFEDLVNQRTLEFGTINSSSTFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVKESNYAFLGESVMQDIMVAKHCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKWWDNTCNMKRSAGWNPVQPHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQKKSCCSAFSEEMGERLGTNKENQGASDSAKS"

     sig_peptide     151..213
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    271..1338
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /note="The ligand-binding domain of non-NMDA
                     (N-methyl-D-aspartate) type ionotropic glutamate
                     receptors, a member of the type 2 periplasmic-binding fold
                     protein superfamily; Region: PBP2_iGluR_non_NMDA_like;
                     cd13685"
                     /db_xref="CDD:270403"
     misc_feature    order(325..327,361..363,373..375,511..516,523..525,
                     538..549,1219..1221,1273..1278,1285..1302,1306..1308,
                     1315..1317)
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:270403"
     misc_feature    order(418..420,499..507,520..522,991..993,1000..1008,
                     1150..1152,1228..1230)
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:270403"
     exon            209..240
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            241..297
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            298..477
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            478..704
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            705..802
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            803..1023
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1249
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1250..1497
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..3283
                     /gene="grik5l"
                     /gene_synonym="grik5; grik5-like.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctggaagatttgcaatgttttcttgaacgcctagatcttctctcattgccattcctgctctggggagaataccagcctgaggatcggacaaatcatcaacacattagggcgtggcttgcacatcatttgctcaccggcagaaatacaacgatggagaaatccctcttacttctttttgctgttacactgttgtctgtgggatgcacagatgcaggagaaagcaaaggatccatacacaaggaaaaagaaaggtcaaagagacaagctctaaagcatctgactgtcactactatcatggagcagcctttctcaatgaagacagaatcaggaatggaaggattctgcatagacttgctgtctgaacttgctcaaagccttggctttaattataccataaaagaagtaaaagatgggcgatacggtgccaaagaccaagatgggaactggaatgggatggttggagaggtgttaagaaaggaagctgatttggcagtagctcctttaacaataactggcgcccgggaaagagaacttgccttcacaaagccattcatgcaaactggtatcagtatactgctgaggaaagatgatgtatctgagaactcatatctctttggctttttaactcctttcagtaaggaaacttggataggaattctggttgcttatgtggtcaccagcctctgccttttccttgttggcagattaagcccttgtgaatggactgaactttccacggaacagaataactttaacttcctgaatagcctttggtttggcgttggtgcttttacgttacaaggtgcagaaccacacccaaaatctgtttctgccagaatcatagcagtcatctggtggatattttccatagtcctggttgctgcatatattgcaagctttgccgcctttctaaactctgacagtatgcaaactacaaacattcagacatttgaagacttggtcaatcaaagaactcttgagtttggaactatcaacagctcttcaacattccaattctttaagaattccaagaatccaacatacagaatgatttatgaatatatggacaaaagaaaagatgagcttcttgtgaaatcatttgctgagggagtccggcgggttaaagagtcaaactatgccttccttggcgagtctgttatgcaagacatcatggtagcaaagcactgtgatcttgtcagggcccctcagatcatcgcaggcagaggatatggcattgctgcttcattagactctccacttattaaaccactgagtgttgccattttggaacaaacagagtcgggtaatatagaatacctaaggaaaaagtggtgggacaacacctgcaacatgaaacgcagtgctggatggaaccctgtgcagccacataccctggggggaatattcctcattcttggtattggcttggcattgggtgttatagcagctttggttgagcttgtgttaaaagccaggaacaacgcagatcagcaaaagaaatcgtgctgttctgctttctctgaggaaatgggagagcgccttggaacaaacaaggaaaaccaaggggcttcggacagtgcaaaatcataagatactgctgcagcaaagatcagcaccatcatttttattttttagatttgttctgctggagttactacttgtacccagtcttggctttttatgtgcttctctgtactagtgagctgttaagtatgcatgactgtattttgaaaaatttgttttaggaaaaatatattccataaatggaattattcagagaccattctgatctggtcaataagcatagtttaattgcttatctttaaattcccagggcaatatcaggatgccaattatgaactaattatacactgaacattgtcctcccacacttgttttctcaggccagctacctataaccataaactaatcctaatatttacagtacaactaaagaggtggtaaatagacaagtcttgcatctccttctctggcttaagtaatatttttccattgccagaatgcagggaacaaaggcaggacagaagagggagcaaaagggaaaccactgatggtgctggtcaggaataatacatactgccctaccctatatatttgacaagctagctacagtttaccataagcatccaatagcaaaatctgctctagtcagagccgttaaataatctttgcagcaacacaagatgaatttgaggctactaaatgaaactttgcagttacaggcattagaaaaaaaacactatgttaatagattgcttattgttaagctgcacctctgatgatcccagtaaaagtatttgcagtcaaagtctcccccaagacaacttttcctaccccttgtctcctttaattatgcacaaagggaggaaggagatggctggaaatacattgggagagtacagacaggggctataacacattaaatatatcctctgcaacatgaagcagttacagaaaccctggataatgtgaaatgtccccaggttgtaagatgttccatataatgcgattatttcatcatttgcattctagacatgccagttgttgctctctggcatataaagttaagcttaagaaaccaaaatgatagagctaggtgtgagacaaaaggaatgtcagtatagattatataacataacatgatattattagaaatgtgatgtaaccagagatcagcttttagttattttggcagactaaatgcagaggcaagaaacacttgtgaagtacaggaatatggcaactttgatttgaaattgaggttacatatgggatggaacaaatgtactatgcattagagggtgtcaaatatttacacatagaaaagcagaagagctaataacaataacacaaatgttcataataagttagagattcctatttgctctaaaggactgaccagaatagaaatattgctcacaatgtaagaaaaaaaataacatcagtggttaatgaaaaaccatttgttcatgctttaggacaaatctcttgaggcagctactacacgtaaaggatttagcagagctaagtgttaccatattgttccagtaaggtgtactgtgttgtgcagaatgtgtgtattgtctttgtgctgttttattgaattttaatggatctaaaccatatagttactatgcattaatgaatctactgtcaacctttgtataaaaacaatcctcttgaaaaatggtaaaaactaaatctatggactaaataacagatgtgcttctaaaatactgattaaatgttttatgataacctaaaaaaaaaaaaaaaaa

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