LOCUS       NM_001017146            1480 bp    mRNA    linear   VRT 02-FEB-2024
DEFINITION  Xenopus tropicalis mitochondrial ribosomal protein L38 (mrpl38),
            mRNA.
ACCESSION   NM_001017146
VERSION     NM_001017146.2
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1480)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR760953.2.
            
            On Oct 14, 2005 this sequence version replaced NM_001017146.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR760953.2 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1480
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="3"
                     /map="3"
     gene            1..1480
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /note="mitochondrial ribosomal protein L38"
                     /db_xref="GeneID:549900"
                     /db_xref="Xenbase:XB-GENE-5959674"
     exon            1..34
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            35..214
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1113
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL38"
                     /protein_id="NP_001017146.1"
                     /db_xref="GeneID:549900"
                     /db_xref="Xenbase:XB-GENE-5959674"
                     /translation="

MPNEQFEGQDVQSLEKYRSFARYYQATEQEQKRSQWWRTYRQYQQEGEDTTREKADIGFPHFTPRNAKTTQARKQILRENHRNPELERAARLRTLRIPLDEVQAEWERTTGRSHVQRVAEHYGVFKDLFGDATFVPSVTLRVQYNKGDEFLMPVYHGNLVTPAEASGPPEVTFEAEEGSLWTLLLTNPDGHLKETDSEYVLWLVGNIPGNQVHSGEQICHYFPPFPAKGTGYHRHIFLLFKQDRRIEFKDELRPNPCHSLKLRTFKTLDFYRKYEESLTPAGLAFFQCAWDDSVTQVYHQLLNMREPVFEYERSPKYHPKQVKYPHGKPLRYLDRYRDSEEPTYGIY"

     misc_feature    481..933
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /note="PhosphatidylEthanolamine-Binding Protein (PEBP)
                     domain present in eukaryotes; Region: PEBP_euk; cd00866"
                     /db_xref="CDD:176644"
     misc_feature    order(628..630,664..666,670..672,739..750,766..768,
                     772..774)
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:176644"
     exon            215..352
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            353..561
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            562..634
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            635..680
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            681..839
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            840..976
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1463
                     /gene="mrpl38"
                     /gene_synonym="hspc262; mrp-l3; rpml3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agaccggcgataggaaggttcctgagtaccaccgccgccctgtgcaagcgtgtccccccactggggccaatgcccaacgagcagtttgaggggcaagacgtgcagtcgctggagaaatatcgcagttttgcccggtattaccaagccactgagcaggaacagaagaggtctcagtggtggaggacctacagacaataccaacaggaaggagaagatacaaccagagaaaaggctgatattgggtttcctcatttcacaccccgtaatgccaaaacaactcaggctcggaagcagatactccgagagaatcacagaaatcccgagctggagagagctgctcgcttgcgcacattaaggattcccctggatgaggtccaagcagaatgggagagaacaactggccgatcccacgtgcaacgggtggcggaacattatggcgtgttcaaggatctgtttggagatgccacctttgtccccagcgtcacacttagagtgcagtacaacaagggtgatgaattcctgatgccagtttatcacgggaatttggttaccccagctgaggcgtctggtcctcctgaagtgacatttgaagccgaggaaggttctttgtggactctactgctcaccaatccagatgggcacctgaaggagacagattctgaatatgtactttggctggtaggaaacatcccaggaaaccaggtgcattcaggagaacagatctgccattacttcccaccattccctgccaaaggcacaggataccacaggcacatcttcctcttgtttaagcaggatcgacgcattgagtttaaggatgagcttcgaccaaacccatgccacagtctaaagctgaggacatttaagacattagacttctacagaaagtatgaggagagtctcacccctgcaggcttggcctttttccagtgtgcgtgggatgacagtgttacccaggtctatcaccagttactcaacatgagagaaccagtatttgaatatgagcgctcgcctaaatatcaccctaagcaagtgaaataccctcatggaaaacccttgcggtacctggaccgttatcgagactcagaagaaccaacttatggcatttactgagtgcggaaccatatctcgccttgcccagtagactaatgggagctgcttggccaatgggacagaatctactacttcttcaggctaaaatgccattttgaatttgcagccctaccatctttggttccattaatcctcttttaccctaacgggactctctgcacagttgctgtaataataacttactgaatactgacggcaaatgagacattggaatacaaatgtgctccactcgggctgcttgagatattgtggcattagggtcattaatgagattttttggttggtgaagtggacagtggggaatgtcagtgactgcttttgtacttaaaatcattaaacctgtgcccttaaaaaaaaaaaaaaaaaa

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