LOCUS       NM_001016992             686 bp    mRNA    linear   VRT 03-JUL-2023
DEFINITION  Xenopus tropicalis ribosomal protein S5 (rps5), mRNA.
ACCESSION   NM_001016992
VERSION     NM_001016992.3
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR848217.2.
            
            On Aug 31, 2012 this sequence version replaced NM_001016992.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161332.1, CR848217.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028304, SAMD00028309
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-686               CR848217.2         3-688
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="8"
                     /map="8"
     gene            1..686
                     /gene="rps5"
                     /note="ribosomal protein S5"
                     /db_xref="GeneID:549746"
                     /db_xref="Xenbase:XB-GENE-919703"
     exon            1..106
                     /gene="rps5"
                     /inference="alignment:Splign:2.1.0"
     CDS             2..613
                     /gene="rps5"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS7"
                     /protein_id="NP_001016992.1"
                     /db_xref="GeneID:549746"
                     /db_xref="Xenbase:XB-GENE-919703"
                     /translation="

MSDWETVPVGAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKFLPHSGGRYAAKRFRKAQCPIVERFTNSLMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR"

     misc_feature    50..610
                     /gene="rps5"
                     /note="Eukaryota homolog of Ribosomal Protein S7; Region:
                     uS7_Eukaryote; cd14867"
                     /db_xref="CDD:271246"
     misc_feature    order(50..52,137..145,149..160,257..259,269..271)
                     /gene="rps5"
                     /note="S9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(149..151,155..157,167..178,185..187,209..211,
                     218..220,224..238,248..262,269..271,389..397,401..403,
                     431..433,452..454,473..475,482..484,500..505)
                     /gene="rps5"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(281..283,290..295,302..304,500..502,506..511)
                     /gene="rps5"
                     /note="S25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(386..388,395..397,401..403,608..610)
                     /gene="rps5"
                     /note="S11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     exon            107..316
                     /gene="rps5"
                     /inference="alignment:Splign:2.1.0"
     exon            317..445
                     /gene="rps5"
                     /inference="alignment:Splign:2.1.0"
     exon            446..544
                     /gene="rps5"
                     /inference="alignment:Splign:2.1.0"
     exon            545..669
                     /gene="rps5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gatgtcagattgggagaccgttccagttggggctgagacccctgaaattaaactgtttggaaaatggagcacagatgatgtacaaataaatgatatttctctacaggattacattgcagtgaaggaaaaatatgccaagttcctgccacacagcggaggacgttatgccgcaaaacgcttccgtaaggctcagtgccccattgtggaacgtttcaccaactcccttatgatgcatgggaggaacaatggcaaaaaactcatgacagtcagaattgtaaagcatgcctttgaaatcatccacctgctaaccggggagaatcccctgcaagttttggtaaatgccatcatcaacagtggtcctagggaagattctacacgtattggtagagctggaactgtgaggagacaagctgttgacgtttcacctcttaggagagtaaaccaggctatatggctgctttgcactggggcccgtgaagctgcttttaggaacattaagacaattgcagagtgcgttgctgatgaacttattaatgcagccaagggttcctctaactcatatgccatcaagaaaaaggatgaactggagagagtagccaaatccaaccgttaaagcatcagcagtttaatgagagtatacgttctcataataaagaaatttgttctgtaaaaaaaaaaaaaaaaaa

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