2025-08-21 20:23:19, GGRNA.v2 : RefSeq release 230 (May, 2025)
LOCUS NM_001016583 1029 bp mRNA linear VRT 02-APR-2025 DEFINITION Xenopus tropicalis NK6 homeobox 1 (nkx6-1), mRNA. ACCESSION NM_001016583 VERSION NM_001016583.3 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 1029) AUTHORS Zhao,S., Jiang,H., Wang,W. and Mao,B. TITLE Cloning and developmental expression of the Xenopus Nkx6 genes JOURNAL Dev Genes Evol 217 (6), 477-483 (2007) PUBMED 17450377 REFERENCE 2 (bases 1 to 1029) AUTHORS Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W. and Richardson,P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev Dyn 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF460791.1. On Sep 13, 2007 this sequence version replaced NM_001016583.2. ##Evidence-Data-START## Transcript exon combination :: EF460791.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028308, SAMN00861989 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1029 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="1" /map="1" gene 1..1029 /gene="nkx6-1" /gene_synonym="nkx6.1; nkx6a" /note="NK6 homeobox 1" /db_xref="GeneID:549337" /db_xref="Xenbase:XB-GENE-483574" CDS 1..1029 /gene="nkx6-1" /gene_synonym="nkx6.1; nkx6a" /note="NK6 transcription factor related, locus 1" /codon_start=1 /product="homeobox protein Nkx-6.1" /protein_id="NP_001016583.2" /db_xref="GeneID:549337" /db_xref="Xenbase:XB-GENE-483574" /translation="
MEGTRQSAFLLSSPPLAALHSMAEMKAPLYPAYTLPVQACSSSTSSSSSSSSSLSSSPSPPLGSPTQLTHKHSSSPPSSGGLSLGTPPLQISAATPHGINDILSRPIVSCLPSLALTTSSSASSAAVASSSSPAGILAGLPRFSSLSPPPPPPPGLYFSPSAAMAVARYPKPLTDLPGRTPIFWPGVMQSPPWRDARLACGPHQGSVLLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDTETERLKGASDNEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSAILLQQSENDSSS"
misc_feature 640..816 /gene="nkx6-1" /gene_synonym="nkx6.1; nkx6a" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" exon 1..607 /gene="nkx6-1" /gene_synonym="nkx6.1; nkx6a" /inference="alignment:Splign:2.1.0" exon 608..780 /gene="nkx6-1" /gene_synonym="nkx6.1; nkx6a" /inference="alignment:Splign:2.1.0" exon 781..1029 /gene="nkx6-1" /gene_synonym="nkx6.1; nkx6a" /inference="alignment:Splign:2.1.0" ORIGIN
atggaaggcaccaggcagagcgctttcctcctaagcagcccacccctggcagccttgcatagtatggcagagatgaaagcccctctgtaccctgcttatacgctccctgttcaggcatgttcttcatccacttcttcttcttcctcttcatcttcatcattgtcctcttctccatcaccacccctgggctccccgacgcagctcacacacaaacactcatcctctcccccatctagtggagggctttctttggggacacctccactacaaatttcagcagccaccccacatggcatcaatgatattttaagtcgccctatagtttcttgcctaccctctctggctctcaccacctcctcctcggcctcctctgctgcagtggcctccagctcttcacctgccggaattctggcgggtttaccaagatttagcagcctgagcccccctccgcccccgcctcctggtctctacttcagtcccagcgctgccatggcagtggcacggtaccccaagcctcttactgacctgcctggaaggactcccatcttttggcctggagtaatgcaaagtccgccctggagagatgctcggctcgcctgcggcccccatcagggctctgtgttgctagacaaggatggaaagaggaaacacaccaggcccactttttctggccaacagatcttcgctttggagaagactttcgaacaaacgaaatacctagctgggccggagagagcccggcttgcctattccctgggcatgacagagagccaagtgaaggtatggttccagaacaggaggaccaaatggaggaagaaacatgcagctgagatggccacagctaaaaagaagcaggatacagagactgagaggctgaagggagcttctgataacgaggaggaggatgatgactacaacaaaccgctggaccccaactcagatgatgaaaaaatcactcagctcctgaagaaacacaaatcaagcagcgccatacttctccaacagtctgaaaatgacagctcttcttag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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