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2025-08-21 20:23:19, GGRNA.v2 : RefSeq release 230 (May, 2025)

LOCUS       NM_001016583            1029 bp    mRNA    linear   VRT 02-APR-2025
DEFINITION  Xenopus tropicalis NK6 homeobox 1 (nkx6-1), mRNA.
ACCESSION   NM_001016583
VERSION     NM_001016583.3
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Zhao,S., Jiang,H., Wang,W. and Mao,B.
  TITLE     Cloning and developmental expression of the Xenopus Nkx6 genes
  JOURNAL   Dev Genes Evol 217 (6), 477-483 (2007)
   PUBMED   17450377
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF460791.1.
            
            On Sep 13, 2007 this sequence version replaced NM_001016583.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF460791.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028308, SAMN00861989
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..1029
                     /gene="nkx6-1"
                     /gene_synonym="nkx6.1; nkx6a"
                     /note="NK6 homeobox 1"
                     /db_xref="GeneID:549337"
                     /db_xref="Xenbase:XB-GENE-483574"
     CDS             1..1029
                     /gene="nkx6-1"
                     /gene_synonym="nkx6.1; nkx6a"
                     /note="NK6 transcription factor related, locus 1"
                     /codon_start=1
                     /product="homeobox protein Nkx-6.1"
                     /protein_id="NP_001016583.2"
                     /db_xref="GeneID:549337"
                     /db_xref="Xenbase:XB-GENE-483574"
                     /translation="
MEGTRQSAFLLSSPPLAALHSMAEMKAPLYPAYTLPVQACSSSTSSSSSSSSSLSSSPSPPLGSPTQLTHKHSSSPPSSGGLSLGTPPLQISAATPHGINDILSRPIVSCLPSLALTTSSSASSAAVASSSSPAGILAGLPRFSSLSPPPPPPPGLYFSPSAAMAVARYPKPLTDLPGRTPIFWPGVMQSPPWRDARLACGPHQGSVLLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDTETERLKGASDNEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSAILLQQSENDSSS"
     misc_feature    640..816
                     /gene="nkx6-1"
                     /gene_synonym="nkx6.1; nkx6a"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            1..607
                     /gene="nkx6-1"
                     /gene_synonym="nkx6.1; nkx6a"
                     /inference="alignment:Splign:2.1.0"
     exon            608..780
                     /gene="nkx6-1"
                     /gene_synonym="nkx6.1; nkx6a"
                     /inference="alignment:Splign:2.1.0"
     exon            781..1029
                     /gene="nkx6-1"
                     /gene_synonym="nkx6.1; nkx6a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggaaggcaccaggcagagcgctttcctcctaagcagcccacccctggcagccttgcatagtatggcagagatgaaagcccctctgtaccctgcttatacgctccctgttcaggcatgttcttcatccacttcttcttcttcctcttcatcttcatcattgtcctcttctccatcaccacccctgggctccccgacgcagctcacacacaaacactcatcctctcccccatctagtggagggctttctttggggacacctccactacaaatttcagcagccaccccacatggcatcaatgatattttaagtcgccctatagtttcttgcctaccctctctggctctcaccacctcctcctcggcctcctctgctgcagtggcctccagctcttcacctgccggaattctggcgggtttaccaagatttagcagcctgagcccccctccgcccccgcctcctggtctctacttcagtcccagcgctgccatggcagtggcacggtaccccaagcctcttactgacctgcctggaaggactcccatcttttggcctggagtaatgcaaagtccgccctggagagatgctcggctcgcctgcggcccccatcagggctctgtgttgctagacaaggatggaaagaggaaacacaccaggcccactttttctggccaacagatcttcgctttggagaagactttcgaacaaacgaaatacctagctgggccggagagagcccggcttgcctattccctgggcatgacagagagccaagtgaaggtatggttccagaacaggaggaccaaatggaggaagaaacatgcagctgagatggccacagctaaaaagaagcaggatacagagactgagaggctgaagggagcttctgataacgaggaggaggatgatgactacaacaaaccgctggaccccaactcagatgatgaaaaaatcactcagctcctgaagaaacacaaatcaagcagcgccatacttctccaacagtctgaaaatgacagctcttcttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]