LOCUS       NM_001011405            1673 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis homeobox A5 (hoxa5), mRNA.
ACCESSION   NM_001011405
VERSION     NM_001011405.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088772.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088772.1, CF378275.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00861992, SAMN00862010
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..1673
                     /gene="hoxa5"
                     /gene_synonym="hox-a5; hox1; hox1.3; hox1c"
                     /note="homeobox A5"
                     /db_xref="GeneID:496880"
                     /db_xref="Xenbase:XB-GENE-486061"
     misc_feature    7..9
                     /gene="hoxa5"
                     /gene_synonym="hox-a5; hox1; hox1.3; hox1c"
                     /note="upstream in-frame stop codon"
     CDS             61..885
                     /gene="hoxa5"
                     /gene_synonym="hox-a5; hox1; hox1.3; hox1c"
                     /note="homeo box A5"
                     /codon_start=1
                     /product="homeobox protein Hox-A5"
                     /protein_id="NP_001011405.1"
                     /db_xref="GeneID:496880"
                     /db_xref="Xenbase:XB-GENE-486061"
                     /translation="

MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVNEQYRDTTSMHSSRYGYGYNGMDLSVGRSASNHFSANDRARNYPSNPSSSTEPRYNQPAASAHSPPPDPLPCTAVATSPVSDSHQGGKNSITNSNNTTSNSSNSSTGTSTHINRDGLGASSGAEDDAPASSDQASSQNSQSPAPSVQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP"

     misc_feature    658..828
                     /gene="hoxa5"
                     /gene_synonym="hox-a5; hox1; hox1.3; hox1c"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

gtgctatagacgcgcaaaacgaccaagagccacaaatcaagcacacatatcaaaaaacaaatgagctcttattttgtaaactcattttgcggtcgctatccaaatggcccggactaccagttacataattatggagatcacagctcggtgaacgagcaatacagggatacaacgagcatgcattccagcaggtacggatacggctacaatggcatggatctcagcgttgggcgctcagcttccaaccactttagtgccaatgacagagcaaggaattatccatccaatccgagctcctctacagagccaaggtataaccaacctgcagcgtctgctcactctcctccacctgaccctctgccctgcaccgctgtagccacatcgcctgtcagcgacagtcaccaagggggcaaaaactccataactaactccaacaacaccacgtccaattcaagcaacagcagcactggcaccagcactcacattaacagagatgggctgggtgcatcttctggtgctgaggatgatgccccagcaagcagcgaccaggcaagttctcagaacagccaaagcccagctccgtcagtgcaaccccaaatctacccctggatgcgaaaactgcacataagccatgacaacataggagggccagaaggaaagcgagcccggacagcctacacccgctaccaaactctggagctggaaaaggaatttcatttcaacagatacctgacccgcaggaggaggattgaaatagcccatgcactctgtctctctgagaggcaaattaaaatctggttccaaaacaggagaatgaagtggaaaaaagacaataaactaaagagtatgagcatggcagcggctgggggtgcatttcgtccttaaatttcccctccctaaagaatgtactgattcagtattagctaaacctgtatattgtcaccaccactttgtataactcttctctgtgacttctgtgaagataccctcctccctaatatcttgtctaccctttatcctagcaatgagcctttaaactgggtgaaatagcttcaactgcttcctgtaaatgttttgtccttggatgcctatgtattgacaatttaatgttttaacttatttgagtatgtaaagcgcttatgtgttacttgaaataactgtacaaaaatgagattacgacagcaaacgtttattacagatgttttgtgtctgcagacccctgtatatgttcgtgtagtgtgaccatgtctgaatgccttccaactgtctcccacaatttcatgaaactacctagagttcctgtgaaaaataactatgttgtagaagtgactttgcggtccaatttatcttgtgatattgtctaagtagctgtgacacaaattgtgtctgtcctagctgtgccttttgtaatgagaaaaaaaaaacacaacaagaaaaaaaggaaaaaaaaaacgtttgcacgaaactttactgaaaatggctggaatcgcagcgtctggttaatgtgttttgttttataaattcaataatatagtggagcttggcagattacgcaattgttccaatttttttgtaaaaaaaaaatttttttttcaagaaaaattatgactggaaacaacaacaaaaaaaaataaactttctactgaaaaaaaaaaaaaaaaaaaaaaaaaagg

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