LOCUS       XM_039098347            4961 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 1007 like 2
            (Zfp1007l2), transcript variant X2, mRNA.
ACCESSION   XM_039098347
VERSION     XM_039098347.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4961
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4961
                     /gene="Zfp1007l2"
                     /note="zinc finger protein 1007 like 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 long SRA reads, 6 Proteins"
                     /db_xref="GeneID:102556098"
                     /db_xref="RGD:7732163"
     CDS             2372..4276
                     /gene="Zfp1007l2"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X2"
                     /protein_id="XP_038954275.1"
                     /db_xref="GeneID:102556098"
                     /db_xref="RGD:7732163"
                     /translation="

MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSFEEHCQSFRRYGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHSGEKPYKCNQCGKTFERRCNLGRHKLIHTGRKSYKCNQCGKAFARHSHLKLHGITHTGEKPYECDQCGKAFASHSYLQVHKTIHTGEKPYVCDQCGKAFAHSRPLRRHKIMHTRKKTYKCNQGGKAFARHSHLKTHGVTHTGEKPYKCDQCGKAFASHRYLQVHKRIHTGEKPYECDQCGKAFASHSHLQVHRITHTGEKPYKCDQCGKAFAYHSYLQVHKRIHTGEKPYVCDQCGKAFAHLRHLQVHGITHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFAQLSHLQVHGITHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKFYECDQCGKAFASHSHLQVHKRIHTGEKPYVCDQCGKDFVVQRDLKRHKRTHTGEKPYKCNECGKAFVWNGSLRAHKVIHTGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKQCGKAFVGQNYLKKHERIHTGEKLYECNECGKAFVFDASLRKHKAVHTGVKP"

     misc_feature    2381..2503
                     /gene="Zfp1007l2"
                     /note="KRAB box; Region: KRAB; pfam01352"
                     /db_xref="CDD:460171"
     misc_feature    <2561..3046
                     /gene="Zfp1007l2"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2603..2746
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2768..2830
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2840..3970
                     /gene="Zfp1007l2"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2852..2914
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2867..2869,2873..2875,2879..2881,2885..2890,
                     2897..2902,2909..2911,2951..2953,2957..2959,2969..2974,
                     2981..2986,2993..2995,3035..3037,3041..3043,3047..3049,
                     3053..3058,3065..3070,3077..3079)
                     /gene="Zfp1007l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2936..2998
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3020..3082
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3104..3166
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3188..3250
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3203..3205,3209..3211,3215..3217,3221..3226,
                     3233..3238,3245..3247,3287..3289,3293..3295,3305..3310,
                     3317..3322,3329..3331,3371..3373,3377..3379,3383..3385,
                     3389..3394,3401..3406,3413..3415)
                     /gene="Zfp1007l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3272..3334
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3356..3418
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3440..3502
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3524..3586
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3539..3541,3545..3547,3551..3553,3557..3562,
                     3569..3574,3581..3583,3623..3625,3629..3631,3641..3646,
                     3653..3658,3665..3667,3707..3709,3713..3715,3719..3721,
                     3725..3730,3737..3742,3749..3751)
                     /gene="Zfp1007l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3608..3670
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3692..3754
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3776..3838
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3860..3922
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3944..4006
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3980..4057
                     /gene="Zfp1007l2"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    4028..4090
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    4064..4138
                     /gene="Zfp1007l2"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    4112..4174
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    4196..4258
                     /gene="Zfp1007l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     polyA_site      4961
                     /gene="Zfp1007l2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tttatctttttcatagtgatttgcatatttgctgtcttgatttatgcatttaaattttccatattctttattatcttccacactactttttcttaattttaagttgtgtttgataagttagagaattttattttcatttatatgtataagtattttgcctttatgtatgtttgagcaccatgttcctggtgtcttccgtggaggtcagaagaggaaatcagattttctggaactggagtaggacatggttgtgagttcctatcccacacctggaattaaaacaataacatgttcacttaccgtaattgggttttttaacaaacccaaactcttattaaaactaccagtagttgcacttccagaaaatctgatgccctatactgaccttcaaaggtcataaataatattatataaagaggtttgtataactttttaaagtgatgtattgtgcctgtgactgtgctgtgtatggatgccctataggccagaagtatacgatcttctagaactggatttagggtacttgtggactacctgacctgtatcccaagaaccaaatgcaggtcctcttcagaaatcatagacattgtggactccaagctcctcagcctggacccagtgagttttgaagtgtctgttgtatcatcaactcctcttgaacctgattttcttggtgtgttggttcacagtgaatgctgagatcaggggagaggaaggctgtccttttcaatgaatagttcttactgtctgtgagcctttgtttgcagttgatccctgtcaacatgatctgactcacagtttgcatctactgctttataaggtatttcattgtcttcccaagcattcaatgtgctagactaggttgtctgacatttttttttactttttattatatttattaattcgtgactgtgacaactaccccattttccaagaaagttttctcttgatactgctacagtgtgctgcagtatcatggtaaggggctgtaagtggcatgaaacataaggaccacaatttttaactgcaagccatgatggtgtgtaatgattaaatgaaaatatttgttatggatggtcagatgaagattccaaaatatcatatctaaggtattttcaattgtttctcctgtcttcttgcagtatttgtggctataaacattgtcttgtgcatgattttaaatgtcccatttttaattcctcattgcaattttggttccagtcatatcatgaatggagtgatcatggagcaggacaagctggcctgctcctgtattgatgagaacttcacaactaactataagatgttggccaccctggttgaagggaactttttagaggtctaactggatttccatgtccccacactgatctgtgtggctgtaaacattttccaaaacgtcaagatatatgtcttgcttttctgcaggaaaatcagcaatgtgaaatcacttgaccatcctaactttatcaagctgtttcacatggtcagacaagagaaaacacctaccagttgaaggataatgccttggatggagagacactagaacaagtcattgaaggtgggggtctttagaggaaagtctctatgcaaagttcaaaggatgtttgctgagatagtacatgctgtgcagtactgccatgaccatcacattttccacagagacataaagaccagcaagctgttaatcgacagcagtaggaacgccaagctgtgtgattttggcctgggcagaagctagcagatttctgggacacacttccttacagtgccccagaattttagcaagcacaggaacatgagagctgccctgtggatatctggagtttaggggtcctcctgttcttcaaggtggccaggatctcacctttctgaggcaagtattttgcaggtgtgaaactgcagattatcaagcaccacaaactttagcattcctttttatgtttccatttattttttaaggtcatcattgaactattgattgtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaagtgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccaggcagtaggaatgtacaggctcttttaacaatttgatgctcactctaacccttacggaggtgctcaagtctctcaagactactggccaatcagagttttcactggacgtgccaatcagaagagaaggcgggcatttccgggtgccttgttgcaggattcgcttagtcgccaagccttcttaaatggtcctgcctgctgtgctctgtgtcccgcggttggattctgtgaggcatgctcaggcaagctccaaagttgcgacatggacgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagttttgaagaacattgtcaaagtttcagaagatatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatgtaatcaatgtggtaaaacctttgaacgccgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaactgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaacaatacatactggagagaagccctatgtgtgtgatcaatgtggtaaagcctttgcacatagtcgtcctcttagaaggcataaaataatgcatactaggaaaaaaacctacaaatgcaatcagggtggtaaagcctttgcacgacacagccatctcaaaacgcatggagtaacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatctcataggtatctccaagtacataaaagaatacatactggagagaagccctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagttcatagaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacatctccgtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcagtgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcagtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagttctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagggatcttaaaagacataaaagaacacatactggcgagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgagcacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcagtgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttatgaatgtaatgaatgtggtaaagcttttgtatttgatgctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatggaatgaatgaattaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaactttgacaacatgaaagaattcatactggagagcaaccttacaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtggcctttgaggatgtaagtcactgtgggggagggtgggctttgagtccccatgcttaaactctgcccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctcctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttataagaa

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