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Previous release (v1)
2024-11-23 05:48:48, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_039084908 3717 bp mRNA linear ROD 22-FEB-2024
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like
(LOC120094815), transcript variant X8, mRNA.
ACCESSION XM_039084908
VERSION XM_039084908.2
DBLINK BioProject: PRJNA1074393
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_086027) annotated using gene prediction method: Gnomon,
supported by mRNA evidence.
Also see:
Documentation of NCBI's Annotation Process
On Feb 22, 2024 this sequence version replaced XM_039084908.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Full annotation
Annotation Name :: GCF_036323735.1-RS_2024_02
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.2
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 02/09/2024
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3717
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/bio_material="RGD 61498"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney, spleen, liver"
/geo_loc_name="USA: Wisconsin, Milwaukee"
/lat_lon="43.05 N 88.04 W"
/collected_by="Rebecca Schilling, Melinda Dwinell"
gene 1..3717
/gene="LOC120094815"
/note="zinc finger protein 431-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1
mRNA, 52 long SRA reads, 3 Proteins"
/db_xref="GeneID:120094815"
/db_xref="RGD:41247165"
CDS 1053..3356
/gene="LOC120094815"
/codon_start=1
/product="zinc finger protein 431-like isoform X5"
/protein_id="XP_038940836.1"
/db_xref="GeneID:120094815"
/db_xref="RGD:41247165"
/translation="
MLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPHDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGQNLYECDQCGKAFASHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 1146..2390
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1188..1247
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1269..1331
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1353..1415
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1440..1499
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1521..1583
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1536..1538,1542..1544,1548..1550,1554..1559,
1566..1571,1578..1580,1620..1622,1626..1628,1638..1643,
1650..1655,1662..1664,1704..1706,1710..1712,1716..1718,
1722..1727,1734..1739,1746..1748)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1605..1667
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1689..1751
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1773..1835
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1845..3089
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1857..1919
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1872..1874,1878..1880,1884..1886,1890..1895,
1902..1907,1914..1916,1956..1958,1962..1964,1974..1979,
1986..1991,1998..2000,2040..2042,2046..2048,2052..2054,
2058..2063,2070..2075,2082..2084)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1941..2003
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2025..2087
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2109..2171
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2193..2255
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2277..2339
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2361..2423
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2445..2507
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2529..2591
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2613..2675
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2628..2630,2634..2636,2640..2642,2646..2651,
2658..2663,2670..2672,2712..2714,2718..2720,2730..2735,
2742..2747,2754..2756,2796..2798,2802..2804,2808..2810,
2814..2819,2826..2831,2838..2840)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2697..2759
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2781..2843
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2865..2927
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2949..3011
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3033..3095
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3069..3146
/gene="LOC120094815"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:463886"
misc_feature 3117..3179
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3132..3134,3138..3140,3144..3146,3150..3155,
3162..3167,3174..3176,3216..3218,3222..3224,3234..3239,
3246..3251,3258..3260,3300..3302,3306..3308,3312..3314,
3318..3323,3330..3335,3342..3344)
/gene="LOC120094815"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3189..>3353
/gene="LOC120094815"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 3201..3263
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3237..3314
/gene="LOC120094815"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:463886"
misc_feature 3285..3347
/gene="LOC120094815"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
polyA_site 3717
/gene="LOC120094815"
/experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN
gggagagaggcagagaaacagaaacacaaagagtacaaaatttctggattatataggaagagcttctggggaaaggaaaactcggtccctgcactggaaagttcaaggtacaaggtggggtatcccagacaggccctgatatgggtggggactgaggagtgctgggagaacctggaggcccagacagctttggtgtgttaaatatatgaaggtcagctgattgtagggtctgaatcccaacagccacaaaacaaaactcttgtttcctcaaatttctctttaattgttaatatcttgggcacccttccacttgtgggacagattaaaaactccactgcaagttgagcatgggggttatgcaagctgcataccttgattccaggaggaggaagggtaagagcctactgagtgttgtgagctgagttcaggttgaagtgaggaccgggtgagctcagggtcactgcccacgaaagggaggagcaagcggctgggcagtggtaggtggtgtggtgggtccttccgggggctgggcggggagacagatgagaacgctattggaggacaggcacaagtgctactgaaatgcaaatccctgtagatctggaaaaggtctggcttcaggcttgatgcttgggccggcaactgtgtacctacactgtacgttcagcccctcctacccttacggaggtgctcaagtcactcaaactactggccaatcggagtcttcaatggacctgccaatcaaaagggaaggcgggcttttccgggtgcctaggtgtaggattcggttagtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggtggcatgtattcatgacattaatactgcctggctatattgcctgagctttctgagtcattggactgcaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggacagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctacaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctgtgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]