LOCUS       XM_039080221           10849 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus argonaute RISC catalytic component 2
            (Ago2), transcript variant X1, mRNA.
ACCESSION   XM_039080221
VERSION     XM_039080221.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039080221.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10849
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..10849
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="argonaute RISC catalytic component 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 7 ESTs, 461 long SRA reads, 26 Proteins"
                     /db_xref="GeneID:59117"
                     /db_xref="RGD:621255"
     CDS             144..2585
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X1"
                     /protein_id="XP_038936149.1"
                     /db_xref="GeneID:59117"
                     /db_xref="RGD:621255"
                     /translation="

MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"

     misc_feature    279..503
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    531..683
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    684..1046
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(840..842,885..887,927..929,939..941,993..995,
                     1014..1016,1020..1022)
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1179..2456
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1590..1592,1602..1604,1638..1649,1656..1658,
                     1680..1682,1689..1691,1701..1703,1713..1715)
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1794..1796,1800..1802,2010..2012,2424..2426)
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      10849
                     /gene="Ago2"
                     /gene_synonym="eIF2C 2; Eif2c2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gggatggcaacacagtatcctgggttcttgcgtctcctgctccgacaacatcacccatcccaggatatgccttcaagcctccacctcggccggatttcggcaccaccgggagaacaatcaaactacaggccaatttctttgaaatggacatccccaaaattgacatctatcactatgaattggacatcaaacctgagaaatgccctcggagagtgaacagggaaatagtggagcacatggtccagcactttaaaacccagatcttcggggaccggaagccagtgtttgatggacggaagaatctgtacacagctatgccccttccaattggcagggacaaggtggaactggaggtcacgctgccaggagaaggcaaagatcgcatctttaaggtatccatcaagtgggtatcctgcgtgagcttgcaggcgttacacgatgcactttcggggcggctgcccagcgtccccttcgagacgatccaggccctggacgttgtcatgaggcacttgccatccatgaggtacacccctgttggccgttccttcttcactgcatcggaaggctgttccaaccctctgggagggggcagagaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgctgaacatcgatgtatcagcaacagcattttacaaggcacagccagtgatcgagtttgtttgtgaagtgttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaattaaaggtctaaaggtggagataacgcactgtggtcagatgaagaggaaataccgtgtctgcaatgtgacccggcggcctgccagtcaccaaacgttcccactgcagcaggagagtgggcagacagtggagtgtacagtggctcagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccatgtttacaagttggacaagagcagaaacacacctaccttcctttggaggtctgtaacatagttgctggacagagatgtataaaaaaattaacagacaatcagacctcaaccatgatcagagcaactgccaggtcagcgcccgatcggcaagaggagatcagcaaattgatgcgaagtgcaagtttcaatacagacccgtatgttcgtgaatttgggatcatggtgaaagatgagatgacagatgtgacagggcgggttctgcagccgccctccatcctctacgggggcaggaacaaagcgattgccacccctgtccagggtgtgtgggacatgagaaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcctgctttgcaccccagcgccagtgtacagaagtccatctcaagtccttcacagagcaactgaggaagatctcaagagatgctgggatgcctatccagggtcagccctgcttctgtaaatacgcacagggggcagacagtgtggaacccatgttccgacacctgaagaacacatacgctggtctccagctggtggtggttatcctgcctggcaagactcctgtgtacgcggaagtcaagcgtgtgggagacacggtgctgggcatggccacgcagtgtgtccagatgaagaacgtgcagaggaccacgccacagaccctatccaatctctgcttaaagatcaatgtcaaactgggaggagtcaacaacatcctgctgccacagggcaggcctccagtgttccagcagcctgtcatcttcctgggagccgatgtcacccacccaccagctggggatgggaagaaaccttcaattgctgccgtcgtgggcagcatggacgcacaccccaaccgctactgtgccaccgtgcgcgtacagcagcaccgacaggagatcatccaggacctggctgctatggtgcgagagctgctcattcagttctacaaatctacacgcttcaagcccacccgcatcatcttctaccgagacggcgtctctgagggccagttccagcaggttcttcaccatgagctcctggccatcagagaggcctgcataaagctggagaaggactatcagccagggatcacattcatcgtggtgcagaagcggcaccacacacgtctcttctgcacagacaagaatgagcgggttggaaagagtgggaacatcccagcaggcacaaccgtcgacacaaagatcacccacccaactgagtttgacttctacctgtgcagtcatgctggcatccaggggacaagccgtccttcccactaccacgtgctctgggatgacaatcgtttctcttctgatgagcttcagattctgacctaccagctgtgtcacacctacgtgcgctgcacacgctctgtgtcaattcctgcgccagcttactatgcccacctggtggccttccgagccaggtaccacctggtggataaagaacatgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagatcaccaggcgctggccaaggcggtccaggtccaccaggacacactgcgcaccatgtactttgcttgacatgttgtattgtttagcgattgtgtaccaagttggattcacacgagaccagctacactcagaccaacagatgcccagcccttccgtgacagccagcatcgaacatgagacgtctttggttttattagatcctccattttccagaatgccttccgtcccagatttcagacttggattttgagctacaggcctgtatgagacccccattgtaggaaacgtggtttgccaaacctataagctgctcactgagagtctcgtttcctaaaagcaaaaaacaacaaaatgtcctaaaaccagtctatgaactctcagggctttaaaacattttaatttatttggtcattcgatttacttgtttttaacacctgattctcaatgaaatcgatgggctcaaactagctgtgaaggctctgagcgggaaagcagcaccattaccattggggttttaaagcctggccctagaagttgtcaccagtgttgagtgctaagggctgccatgtaccctgcagccccagggcactcggctgctaggtatccacagtgtccctcgctggccactgcctgccctcgaggcctgagtgaaggcatagtggccaaggggatggtcacgtgtgtttagggcagtgacaagtttgagagattggcagacaagtgccattttgataaaaatttatttaaaaagagaaaaaagacaatatactgacagtctaatcataagatttgtcctgtaggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgatagatacagtacaatcctttttcactgttatgtctttaatgtaagagaagaatatatgtatctggtttgcagtattaatgtggtaggtagatgctgtttcccttttgttgacgaggggcgcttcttgtgacctgcttcacgtaccaggagctgtggagcctggagacagtccacctcttgtggcttttagtgcttaagtagaggaatatgcacctggcttcacgtaacagcgatgcctccttcttccctccccacccccagtgtggactgtgtagcctgtacctctgggaaggacagtgtgcttgccagtaatctgccgtcctccctgcctcgtccgtgtgtgtcgctcagctgatgaagcacaagtggaatttatttattctcccatggctgggaaacaagttcacgtaagcgtgcactgctctcagctatgtgcagttatggaaggtgggtttcataggatctatgcactgaagtggagagagagctgctcacagtggctctgccggcatgggattggcaggtaggactggaacatgccgaggagctgacggtgggcaaggccagcagggaaggcacggacttgctctgggtgtggcttgcttctgggccccaatgtgggtttgccagcctagagaccattgaactgaggggccactacgagtggctctgcaaatggcagcagccacctctgagtatgtgtcctgtggggctttttgtgcttgtaccgaagctgcgtgagcatccggtccgttccacagacaagttcccggaaggagacgagccttctcttctgtgctgctttgtgctctgtgggttttttctgcccctgctgacggccctcatcccccagctctgcgtcatttacctctgaccctgcggtggggggagggtgcccaccctctcccccagctgtggcacctcatgctagaggacacagtaccacctttaccccttcacccgtctgcactggggctggtgggaagggcgggcgcagtcacctgggaagtcacgccctcagcaggtgtgcgtctgtgtatgcatgtgggtgtcttactaatgacagtagtctcttcttgctgtgtctttagaaatcttttaaagtgacagacccctagtctaagaagcactgggactgcctgctatcccattggcaagtggcactttctcaaactgtttccgaaaggatataaaaacactcagctcacctaacatggtcaggctggagaactggttaaactagtgaacttttagaatctgagatggttttcagccattcttagaaccatgggttcctaaggtgtggcttcagccccttgccacgggatcttagtcatgcaagtgagtttttagagtgcagagtctcaggcctgctgccagcttcttggacctggcccttgcagccagctgggtatctgtgtttgaggccacccccacccacccaccaccatggctctgtgggctttcttaggccgtcccccatgatgccaggggaacaggaaggaagccctatgagagctctcacacggaggaacacttgtgggctggggggaaaatctgagctggaagttttgttttgatcatcttgaaggataagttttcttttctgatgggccaaagtacttgcagaaaggactttctgtagtagcccatgcttacttgtgacacttttaatatgaaatgtacccccagaccaaatgtcctaattgagttagatgcacatcgtccacgtgtctgatggcgcagagcttgtgaatggctatagttccagtttctcaggtaaataattgttcccccaacttctgccctccccttattatcaccattcattctgagaccgtgtgagacctcagtgtggtagcagttcagctaccttctgcaggcgccagcttttttttttttttttttgccgcacctgtacccaagactggtgacaggtgccgttatctcctgaggtgacacctggccaagtttgaagactgcccacgtgctagctgtgttcccaaccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgattatgttgttgtgctctgtatccatttggaaggaaaactaggacgtgcctgtctctttaagagaggctacccaattagactctctcacagtggcactcttcctagtacaatgtaagatactcactcttaaaaacccatcatgacttccattcctttaccactgtgtacaccatgcagcaggtcgtgtcccctcccttctccccccatgctgatgaagcgatgggaaactctagggagacatcgaggccccattctgtagattagcccttagtgatactagcaaaactcctaccctcgtcactgcgtgttataagcctagattgtcctagtccccactgattctgaaaccgagcacacctgtacttctggagagcggctgtttggttttggcttcattctcccatttggggaaatcctcacatgcacacttgataccactttgggtctgctctgccttctccagatttggcctcttggccactcctcacacccacccgcttgctggcctccaggccacagggcactgccagtggggagactgctagctccgtgctgtctgcagctggcccaacacctgtattcctgatgtttacctgttactgagcgcttgatagaaagacagcccctgcagtggggttgggtgggtttttgggtttttttctttccgttgtcttgtattttgttgtttttaaatgcaaatgttgtatttatttttttttcctctcctgctctggtttgacttagctgactggctatcccaatgcatgtggtacctgatggacatggtagagactatttccccccacttttatatatgacccaatgtttaccttcaggcttgctaatgctttatttttggaagccacagatgtagtttttctggatgaattgtttttcctatagatgcagcagtatgcttttgcattgatctgcagggtgatttgaattttatttttacaagcagtttttcaatcaaattctatatttgatacaatgtgttaagggtagaccagcccccgagtcatgcagctggggacccctgagtgtccaggaggccttagggctgggtggcttctcttggtcgtccctgtggtggtagcactggtcagtcacaggagccttcagggtcctttagcgtagccctgacctcttgggttgttacaaggattttttccatgggcattttgctacgcagacagtggacaatccggtggccccagacaagccataagcaacctttctgtgacctctccctgactcatctttcacacccatgggataaggaatgtgcccgagtagacgcgacactccttggtgttcatacgcctcacttgtgaatacagacatttgtttatgttctaagcccttccctgcagtacccatgctggctggctcactatagacagagcacatgcaactcttgtcatgagcgccctgttgtaagcatgctgactcctgtaagttgcactgagtgttgacagttttctttcttgtgtccaactccctatctgctgtactcatttgaagtgattgtaaacagattcacagtggcaagagtgatgtagatgtgggacattgcctcacttctgcgattcccaacacacatttcagtattaatatgctagagtgtgcggactgggctctattctctcgagcattgtgggctagccttgtctctcactctgaccagaagttctccccctctatacaggacagcatgctcttcgagacctgaaggcttgaatgttaactaacatattagttaggagtctttgtgacactttggtctgtttaatttaattttcttgtgatctgcaaggcctgccccccaaagcatgtcaatctcgttctgtgtggtctttgtgagcttggacagcatatgaatagcccagtcggtgttaacaggccattgcagcattcgtgggccagccttcaacttaaagctgtgatcactgctttgtcagactgtcatttgtggtccatccatgggagacctgaagcctggtgcagcccttcatgccttgtgagcctgctgggatcgaagtacgtgttctgtttagccccacatgaactgtctgtggtcagggtacccagtgtctgaaacaaaaggaattatcacactcaaaccaccgagagagagagagagagagagagagagagagagagagagagagagagagagagaggtgagtgttgtgagtgtgtgtgagtgtgagagtatgagtgtcagtgccattgcagagccctcaccttgtgtctttggatttgttcagccattttatttgtctcaagttgaatgtatcggcttagccaaatcactacagaaggtggtttctaaaaccttttagacagatgcataaaagctacctctgacttctcatagatttgtgtttgctctgaagcatcatcgctatccacactgaatatagccaaaatatcgcctgaataaactgagttgtgaacgcctctgttcggttccggcttgaaaacgtgtgtgccatactgtgacctggggcggcggctctcctcagcaccacccagctacaagattctagcatccaagaggctggtggagggggcttctctgcatggggagcacacaccctccacgctggtgggcgtggctgtgcagagccacccgtggctgagcctggggatagtctgttcctgcctggttttgctttcctatttaataatgtaagaaggcatctttaaccctgctttgcttatgaatggattgaaagtggcttccctgctctctcctccctttttatacactataaactcataaaggtgcttaaacaccgactcttgtgcagataatgtatttaagcagttgcatggattcatggattcagatagcgcaggcatagctgaccttgggacccttgtgaaagtgaaggacggaaggctccgtgctccgtttggaaggagcagtggactctgcttgaggagaagttccctctagtcttggcagtgcaggtctaacttaacagatttgtcatggggacccaccgcctctgaccagctgtcctgtggttgtccactttgctgtccagaaggtcatccttttacaccatggttccacctgtatcccctcgggctccctcctcctaaagtttccttgggaagtcagcatacgatcctagatccctccattagttgggttagggaagcctgaggggcagatggaccgtgtcatgaggcaggtgcctgggtactggctgggcagggcagggcactcttctctaggttatctctgtgccctaacccccaccccgttgtagtattgcgtgggtgggggttgacatcttccattctttcgacttggacagctcagtacccctagaatccctcacatatatttctctgtgtggagaaccggaggcatggagggttacttaggactctgatttggctgggatttgaaaatcccaggaagcaaagggtgctacatatgttatgcttagggtgacacccaggtgtggtggtgtaagccacagcctcagggcaccagcacagaggcaggcagcctccccactcaagaggcttgtgaaggataccaaaccagcaggagccctggccactgcagtgttcagctaacacttctttctactggtggaagtgagaacactgaaaccttccaaaggcctggcagttctagtttctccattcctgagggctaaaaggctgaacgagctcctgctttgcttagagctgcctttatttgaattcatttagaggtaaagcatctttaaggaccgtatctcttccctgtgccaccagccagtaggtggcggaggcccttttcattcagttctcctgcatcttcaagctctgggacatcagtgaggtcacaagagcacccacagcagccatcagcagagtgagtactcaaacgggacagaaagcagaaactgtacaggttgtaatggccactccaggttgtgacacatcctgcacagcaggtggcctcagcccgcccttcctcttgaaagtctgttttcggtgtcccttcagaatcatgctgggctggttgttaggtgaccctacctagaagctccgcgagccctcactctttcttgcagactgtgatgccaccttgtagcctgcggctgtggaaacacagtcctatcctgggttctctgtgccctgaagtgcagttgcacctctgctggggtttggtcaggcactggcaaaggctacttgctggccttgtgtttgctgcccctcagcgagaccgtgtgttctagtggaagtagacttagagggaattggaatcatgtctttgtgaatcgagtgtgaagtcctcgggcctaaggtgctacttggtcctaatgttttggagtgcttttctgttgttgttactccattgttacttactctgtcctatgacactgggggagactgctcgcttgggtgtggtgtcgcttacaccgaaaacataggactccagctttgacgtgcccatggtgtgactttcatctctgaccttctcaagtcagggatggtgcctagtctaataaaatccttcctccctgtcaagccattgctttggttggtttcaacaggggaagtagtccagtctggtttttctgtttttttttttttttttaattgcatagaaaaggccgttgcctgtgcagactgcagacggataacacatttagcaaatttggttcctcttcaaagccaaatagacctatgtgattaaactccaagagggtacaattcagcattaaattaaaatctgagtcatgagtttgagagagggaatttcagtatagttgataacgttatgaattcatgttttataattgtagaggcaagtgagtatttaaaaaaatgtaagagaataattgtaagtttctgtgcaacaattcagctactgcctcataaatacaggaagagaccatagccccgaatctcgaccctcttacctcccgttccacttcagattgcctgcctaatatgtattttgaggggttttaacccttggttttatcaaattttctagttttattttatttttataaaataattgagaaagaaccaaaaatgaattcagaagttccccagtggctcctaccccagtcttaatttcctcccacactcaaacgtttcagaagacattttgaaccaaaatgtattccatccatttaccatttgctactttctgagaagtggagcggctaccaaggcctgtttcaggtggtactctgtatgtcatggacctgtctgtacctgtgcagtggatctgtgtgatgacgtcttgtgcttgcggtttagaaaccacacagtgctgtgttgtaaattgacagtttctgtgtaaactattatttataacccttggcccatctgtataatttttcatttgctacatggattgtataattaattataaaattatagtatctgctaaacccaa

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