LOCUS       XM_017589209            8827 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus trinucleotide repeat containing
            adaptor 6A (Tnrc6a), transcript variant X6, mRNA.
ACCESSION   XM_017589209
VERSION     XM_017589209.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_017589209.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8827
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..8827
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="trinucleotide repeat containing adaptor 6A; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 667 long SRA reads, 12 Proteins"
                     /db_xref="GeneID:308971"
                     /db_xref="RGD:1307268"
     CDS             685..6459
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6A protein
                     isoform X6"
                     /protein_id="XP_017444698.1"
                     /db_xref="GeneID:308971"
                     /db_xref="RGD:1307268"
                     /translation="

MQLVAEPGLEARCPGSQDTPLPEEWNRDLVQEEEQLMEEKKRKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPANSDNGTSTATSTNNNAKRATASNQQPPPPQQQPQQQQQQQQQQQEQQQQQQQQQQQQQQPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQNSKSQSDINHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWPSAPGSDPELASECIDADSASNSESERNITVMASGNTGGEKDGLRNSTGLGPQSKFVVGSSSNNVGHGSSTGPWGFPHGAIISTCQVSVDAPESKPESSNSRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGNSGINIQCSTIGQMPNNQSINSKVSGSSTHGTWGSLQETCEPEVSGSQKVSFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPSVLNGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVSTNKGGGVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTSLSSVEWNKLPSNQHSNDSANGNGSKKLTNGWKSTEEDDQGSGTSQTNEQNSVWAKAGGTVESDGSAESTGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQGGWEDDSAATGMIKSNQWGHCKEDKSAWNDSQKNKQGWGDGQKSSQGWSVSASDNWGESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKPNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEGSSRSDQQAQMHRLLPAASAISSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPITAASSASTWGSNSVGPQSLSKSGPKSMQDGWCGEDTPLPGSRPTGWEEEEDVEIGMWNSSSSQELNSSLNWPPYTKKMSSKGLSGKKRRRERGMMKGGNKQEDAWINPFVKQFSNISFSRDSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRAVGKGPGSRPQISKESSMERNPYFDKNGNPSMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSVPSANRQQQDQQGRPLSVQQQMMQQSRQLDPSLLVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPVNAFSSFPIGLNSNLNVNMDMNSIKEPQSRLRKWTTVDSMSVNTSLDQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVPLSSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTWDNSPLRVGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLDCSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWGPPSSSDPRGISSPSPINAFLSVDHLGGGGESM"

     misc_feature    <1930..>2799
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="serine-rich protein; Region: ser_rich_anae_1;
                     NF033849"
                     /db_xref="CDD:468206"
     misc_feature    <2521..>3330
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="serine-rich protein; Region: ser_rich_anae_1;
                     NF033849"
                     /db_xref="CDD:468206"
     misc_feature    3943..>4176
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    <4558..5013
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="M domain of GW182; Region: M_domain; pfam12938"
                     /db_xref="CDD:432890"
     misc_feature    5086..5871
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    5893..6168
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     GW182 autoantigen; Region: RRM_TNRC6A; cd12711"
                     /db_xref="CDD:410110"
     polyA_site      8827
                     /gene="Tnrc6a"
                     /gene_synonym="Tnrc6"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tgggtagggaaggcagccatcaggctccccagaacgaggcaggatggtgtgagctcaagcgccctgcatttgctgggggcagcggtggcaacacttggttattcaaggctggaattcaaatgaggctggcgtggctccaagtctcacggcttaggagagagaggcacattaacaattcatcaagatcagcctttcgtgggctcaggctcccccatctgcatccctccctctgtcactgatttggggcgcgggggggggggctcttcaagaagcacttcgtctgtcagtctgtgagcaggggtgggggcggggggccctgaagttaggcagatttttctcatcacatgatgggggacctgtatcatgtgatggctccggtgatgttggaggcggcatgtgactcccagggctacgtgggctcaaaaacaatttaaatacaaaaacacacgcaggttcccctccttccctttgccttttggtctggctctctctacctttgcgttggtgcctgaccgaatggaaaacccttcttcgttttgcagcctgtgagctccgggtacctggagaccaggccctgtgctgcccccaccccgggagccgtgcccccatcattctgcagtcctctgactatcagcctggtgtggacactgaggcccagagaggtgatgtgatttgcctaaagtcatgcaactagtggcagaaccaggcctagaagccaggtgtcctggatctcaagataccccactgcctgaggaatggaacagggatttagtgcaagaagaagaacagttgatggaagaaaagaaaaggaaaaaagacgacaagaaaaagaaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaagcctagtgtaagccagcctcagcctgccaactccgataacggcacttccacagctaccagcactaataataatgccaagcgagctacagccagcaatcagcagccgccgccgccgcagcagcagccgcagcagcagcagcagcagcagcagcaacaacaagagcagcagcagcagcagcagcagcagcagcagcagcagcagcagccacaagccttgcctcggtatcctcgtgaagtacctccacgatttcgccaccaggaacacaaacagcttctaaagaggggtcagcattttccagtcatagcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaaagcagtgctgtaacaaatcaacagccacaaaataacggagaggtgcagaacagcaaaagccagtcagatataaatcataatacttcaggatcccattatgaaaattgccagcggggacctgtgtcttctacaagtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaaaaagaagcatggccctcagcccctggcagtgatcctgagttggcttcagaatgtatagatgctgattctgcctccaattctgagtcagagagaaacatcactgtcatggcttcagggaacacaggtggtgagaaagatggccttcggaacagcactggactcggtccccaaagcaaatttgtggttggtagcagcagcaataatgtgggtcatggaagtagtactgggccatggggctttccccatggagccataataagcacatgtcaggtctctgtggatgctcctgaaagcaaaccagaaagtagtaacagtagaatgaatgcttggggcactgtaagttcttcatcaaatggagggttaaatccaagcactttgaattcagctagcaaccatggtgcctggccagtattagaaaacaacggacttgccctaaaagggcctgtagggagtgggaattctggcatcaatattcagtgtagtaccataggccagatgcctaacaatcagagtatcaactctaaagtcagtggctcttctacccatggtacctggggtagccttcaggaaacttgtgagcctgaagtaagtggttcacagaaggtttcattcagtggtcaacctcagaatatcaccactgaaacgactggaccaaataacactactaactttatgacctctagtttaccaaactccggttcagtacaaaataatgaactgcctactagtaatccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggctccgtcagttctgaatggcacttccctttctcaccttagtaatggagagtcaaaaactggaggctcctacggtactacatggggtgcctatggttctaattactctggcgacaaatgtgcaggccctaatggccaagccaatggtgacactgtgaatgcaactctaatgcagcctggcataaatgggcctatgggcactaactttcaagttagtacaaataaagggggaggtgtatgggagcctgggacagtgaattcccagagttcaccatggggaagtggaaatggtgcaaattctggaggaagtcgaagaggatggggaagtcctgcacagaacactggcactagtctgtccagtgttgagtggaacaaactgcctagcaaccagcattccaatgacagtgcaaatggcaatggtagtaagaaacttacaaatggatggaaatctactgaggaagatgatcagggttctggcacatctcagacgaatgagcaaaacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagtgcagagagcactggacgccttgaagaaaaagtaaccggggaaagccagagtagagatagaagaaaaattgatcagcacacattactccaaagcattgtaaacagaactgacttagatccacgtgtcctatccaattctgggtggggacagactcctattaagcagaatactgcctgggatacagagacatcaccaagaggggaaagaaagactgacaatgggacagaggcctggggaagctctgcaacacagacttttaactcaggggcatgtacagataagactagccctaatagtaatgatacctcatctgtatcagggtggggtgatcccaaacctactctgaggtggggagattccaaaggctcaaactgccagggggggtgggaagatgattctgctgctacaggaatgatcaagagcaatcagtgggggcattgcaaagaagacaagtctgcatggaatgattcgcaaaagaacaaacaaggctggggcgatggacaaaagtcaagccaaggttggtccgtttctgccagtgataactggggagaatcttccaggagtaaccattggggtgaggctaataagaaatccagctcaggaggcagtgacagcgacaggtccatttctggttggaacgaacttggtaaaactagttcttttacttggggaaataatataaatccaaataactcatcaggatgggatgaatcttctaaacctaactcttcccagggatggggagaccctccaaagtgtaatcagtccctaggttggggagattcatcaaaaccagttagttctccagattggaacaagcaacaagacattgttggatcgtggggaatcccaccagccaccagcaagcctcctggtacaggctggcttgggggacctattcctgctccagcaaaggaggaagaacccacaggctgggaggaaccatccccagagtctatacgacgaaaaatggagatcgatgatggaacttcagcttggggagatccaagcaaatacaactacaaaaatgtgaacatgtggaataaaaacatcccagaaggcagcagccgctcagaccagcaagcacagatgcaccggttgttgccggctgcaagtgccatctcaagcaaggagaccagcagtggctctggctggggtgagccttgggcagagccttctactccagccacgactgtggataatggtacttcagcctggggcaagcccatagacagtggtcccagctggggagaacccattactgcagcatccagtgcatccacgtggggctccaactctgttggtccacaatcattaagcaaatctggacccaaatctatgcaagatggctggtgtggtgaggacacgccattgcctggaagtcgccccactggctgggaagaggaggaggatgtagagattgggatgtggaacagtagctcatctcaagagcttaactcatccttaaactggccaccatataccaagaaaatgtcatccaagggtctgagtggcaaaaaaaggagaagggaaaggggaatgatgaaaggcggaaacaaacaagaggacgcgtggataaacccattcgttaagcagttttcaaatatcagtttttcaagagactcaccagaagaaaatgtacagagcaataagatggatctttctggaggaatgttacaggacaagcggatggagattgataagcatagcctgaatattggtgactacaatcgagcggtcgggaaaggccctgggtctcggcctcagatttccaaagagtcttccatggagcgcaatccttactttgataagaatggcaatcccagtatgtttggtgttggaaacacagcagcacaaccccggggcatgcagcagcctccagcacaacctctcagttcatctcagcctaatcttcgtgctcaagtgcctcctccattactctcccctcaggttccagtttcattgctgaagtatgcaccaaacaacggtggcctgaatccgctctttggccctcaacaggtagccatgctgaaccagctatcccaactaaaccagctttctcagatctcccagttacagcgattgttagcgcagcagcagagggcacagagtcagagaagcgtgccttctgctaaccgacagcagcaagaccagcagggtcgacctcttagtgtacagcagcagatgatgcaacagtctcgtcagcttgatccaagcctgctggtgaagcagcagactccgccttctcagcagccgctccatcagccagccatgaagtccttccttgacaatgtcatgccccacactacacccgagctacagaaagggccatcgccagtaaacgctttcagcagcttccctataggcttgaactcaaacttgaatgtaaatatggatatgaacagtattaaagagccacagtcacgactaaggaagtggacaacagtggacagcatgtctgtgaacacgtctttggatcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaagagtctccatttgttccctatgactttatgaatagcagtacttcaccagccagtcctccaggttcaataggagatggctggccacgtgccaaatcgcctaacggctctagcagtgttaactggccaccagaatttcgccctggtgaaccatggaaaggttatccaaacattgaccctgaaactgacccttacgtcactcctggcagtgtcataaacagtctttcaattaatactgtgcgggaagttgaccacctcagggacaggaacagtgggtcatcctcatccttgaacaccacgctgccttcaactagtgcctggtcatccattcgtgcctccaactacaatgttcccctcagcagtacagcacaaagcacttcagccagaaatagtgattccaaattgacgtggtctcctggttcagttacaaacacctctctggctcatgagctgtggaaagtccctttaccacctaaaaacatcactgctccgtcccgcccacctccggggctgactggtcagaagccacccttgtctacgtgggataattctccccttcgtgtaggtggaggatggggaaattctgacgccagatataccccaggctccagctggggtgagagcagctcagggagaataaccaattggcttgttctgaagaacctcacacctcagattgacggctccactctgcgcaccctgtgcatgcagcatggcccactgattacattccatctgaacctcccacatggaaatgctctggtccgttacagttcaaaggaagaggtagtgaaggcacaaaagtctctgcacatgtgtgtgctggggaacactactattctcgctgagtttgccagtgaagaggagatcagtcgcttctttgcacaaagtcagtctctgaccccttctcctggctggcagtctctcgggtccagccagagccggctgggctccctcgactgttcccactcattctccagccggactgatctcaatcactggaatggtgctgggctgtcgggaactaactgtggagaccttcacggcacttccctctgggggaccccacattattccacaagcctgtggggtcccccaagcagcagtgacccccggggaattagcagcccatcccccattaatgcttttctttctgttgaccacctgggtgggggtggagagtccatgtaatcgcataggtatagacgtaaactgtgacctcaagaagagaaggaaaggagcactaagttgggctcgccgcctgcagccagggccacctgtgggaacagcttttttctgcacattttccactttgttttccccaaaacatatcagtttgaatacttgaatcatgcaggccaatattataatgtgaaagggtatctatctatttacactcccaaatagcgccatacagctaaccgtgtggaatgagctcactagtgtattcatcatgtgtagccttcagattccttctttccttcatttccatcccccatccccaccttttatttttattttttttttgtttttttgtttttttgtttttttttttttttgcaaaaccgttttgggctgatgtatgagcttttacctttgcactgagtgacgttctctccgtctgagcggcagcgtgggggacagctgctccagtgtaaatgtttactcaaggatgttcctaaaggcgtgcgctctctactacgcctcgtgttgcctaccttagtgtggtgtcgtggagttcaagatcaagttgagatactgacgtagggttcttaatgaaagtattgcaccagttttttcatgttgtaaaactaaagaatttcgctctacagtttgagaaactgtggccaccgctgtgacccgcagcccgcctgctgcccaggttgggccctgcactttgaacaggctttccatgttgttttgaaggttcccacggtgaaccttcttgtttacagattttttgtttgttttttgagaaaaaaaatgtttactcttccatcatttaaaaaaaaaaaattaaaagacaaaaaaaaaaaaaaagcggagggtggttaaagacgcttctatctctgggaaaagagcagcattggccatgttcttctgttttctatccccgtcctgaatcaaagagcatggttctcaggaaaccagtccccggtcaaacaatcttgtagtttcttataggaaagaagaaacccaactcttagcactgatactacgtattgctctgttcaagattttctctgccaaaaaaaaagaaaaaaagaaaaaaaaaaaaagaaaagaaaaaccgcgcttcgagctggagttgccgcctgctttcagatgctgtcctttagtagtgggtgatgatggtttgctaatcgctaggtgacttttgtaaccccatcagtggctctcatgtctctgctctcttgtgactgtgttcatgtttaactgttgtaccttaaagccgagatcagtaactatgcatactgtaaccaagacattgggcttacagagttgtttgttgtataaaaattttaaatgttgttgcaaactaacgagttacaccattttaaaatttctttcctccccagcccctgttgttctgcccacaaatggtattataatgcttgcttagtcagagagactaaacaagggtaaagttttaacagtacagagtatgccgtcatttcattgccttgattctaacgtttgtgtcctaagacgcaaaagaggtcagtggcttttaactgtttacaaataggatgtgattgtaagtgtacactttggttgtgtttgaattatgaaatcttcagataataaaccatgactttttggctgctcaacattaattgtctcttttttgtgaatttattcgtaggctcttttataatgaaagttacaaagttgctgcatgtgagaggtcttctcatagagcagcagattaaaaatctaagcaaatatttgaacgttttacctgaacttctccacaatcaccctgagataatgtgagaacagtggaaactgtagcttgctccctcctcccctgagcatctttgggagcttgttgctcaaagctcttctctggcttcaccttccccaccatctgtgcccatctcaagcctcagcgggaccattcggaacacgaagcttactgacttgacagcatcctagcgttaacctctcatacctcacacagtggggatgccaccacctggactggcctctcttccccgtgccctccgcccctcctcgctgcaggagctctgggcgcagaacctgtatgacttcagtcacgctccacttgccaggtgtaagctaatgttggacaccgtaacctaaacaaatgtttaacgcgttcggtgtgtgttgacgtccatactggtttttccaaaaaccaaaggtagctttgaaaaaccatgtgtggagatgtttggaacattaagctgagtgaccgttaggggctttgagtagtatataactgacttcatgacttcgttaattgtattgttaaaagtgtttgggagttttttgcgcttgttatgtggaaataaagtgtttgatttaaaaaata

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