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Previous release (v1)
2024-11-23 11:07:27, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001430820 10985 bp mRNA linear ROD 31-MAY-2024
DEFINITION Rattus norvegicus ring finger and CCCH-type domains 1 (Rc3h1),
mRNA.
ACCESSION NM_001430820 XM_008769698
VERSION NM_001430820.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 10985)
AUTHORS Zhang,Q., Fan,L., Hou,F., Dong,A., Wang,Y.X. and Tong,Y.
TITLE New Insights into the RNA-Binding and E3 Ubiquitin Ligase
Activities of Roquins
JOURNAL Sci Rep 5, 15660 (2015)
PUBMED 26489670
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 10985)
AUTHORS Mino,T. and Takeuchi,O.
TITLE Regnase-1 and Roquin regulate inflammatory mRNAs
JOURNAL Oncotarget 6 (20), 17869-17870 (2015)
PUBMED 26255671
REFERENCE 3 (bases 1 to 10985)
AUTHORS Mino,T., Murakawa,Y., Fukao,A., Vandenbon,A., Wessels,H.H., Ori,D.,
Uehata,T., Tartey,S., Akira,S., Suzuki,Y., Vinuesa,C.G., Ohler,U.,
Standley,D.M., Landthaler,M., Fujiwara,T. and Takeuchi,O.
TITLE Regnase-1 and Roquin Regulate a Common Element in Inflammatory
mRNAs by Spatiotemporally Distinct Mechanisms
JOURNAL Cell 161 (5), 1058-1073 (2015)
PUBMED 26000482
REFERENCE 4 (bases 1 to 10985)
AUTHORS Srivastava,M., Duan,G., Kershaw,N.J., Athanasopoulos,V., Yeo,J.H.,
Ose,T., Hu,D., Brown,S.H., Jergic,S., Patel,H.R., Pratama,A.,
Richards,S., Verma,A., Jones,E.Y., Heissmeyer,V., Preiss,T.,
Dixon,N.E., Chong,M.M., Babon,J.J. and Vinuesa,C.G.
TITLE Roquin binds microRNA-146a and Argonaute2 to regulate microRNA
homeostasis
JOURNAL Nat Commun 6, 6253 (2015)
PUBMED 25697406
REMARK Publication Status: Online-Only
REFERENCE 5 (bases 1 to 10985)
AUTHORS Schuetz,A., Murakawa,Y., Rosenbaum,E., Landthaler,M. and
Heinemann,U.
TITLE Roquin binding to target mRNAs involves a winged helix-turn-helix
motif
JOURNAL Nat Commun 5, 5701 (2014)
PUBMED 25504471
REMARK Publication Status: Online-Only
REFERENCE 6 (bases 1 to 10985)
AUTHORS Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
Krijgsveld,J. and Hentze,M.W.
TITLE Insights into RNA biology from an atlas of mammalian mRNA-binding
proteins
JOURNAL Cell 149 (6), 1393-1406 (2012)
PUBMED 22658674
REFERENCE 7 (bases 1 to 10985)
AUTHORS Glasmacher,E., Hoefig,K.P., Vogel,K.U., Rath,N., Du,L., Wolf,C.,
Kremmer,E., Wang,X. and Heissmeyer,V.
TITLE Roquin binds inducible costimulator mRNA and effectors of mRNA
decay to induce microRNA-independent post-transcriptional
repression
JOURNAL Nat Immunol 11 (8), 725-733 (2010)
PUBMED 20639877
REFERENCE 8 (bases 1 to 10985)
AUTHORS Linterman,M.A., Rigby,R.J., Wong,R., Silva,D., Withers,D.,
Anderson,G., Verma,N.K., Brink,R., Hutloff,A., Goodnow,C.C. and
Vinuesa,C.G.
TITLE Roquin differentiates the specialized functions of duplicated T
cell costimulatory receptor genes CD28 and ICOS
JOURNAL Immunity 30 (2), 228-241 (2009)
PUBMED 19217324
REFERENCE 9 (bases 1 to 10985)
AUTHORS Yu,D., Tan,A.H., Hu,X., Athanasopoulos,V., Simpson,N., Silva,D.G.,
Hutloff,A., Giles,K.M., Leedman,P.J., Lam,K.P., Goodnow,C.C. and
Vinuesa,C.G.
TITLE Roquin represses autoimmunity by limiting inducible T-cell
co-stimulator messenger RNA
JOURNAL Nature 450 (7167), 299-303 (2007)
PUBMED 18172933
REMARK Erratum:[Nature. 2008 Feb 21;451(7181):1022]
REFERENCE 10 (bases 1 to 10985)
AUTHORS Vinuesa,C.G., Cook,M.C., Angelucci,C., Athanasopoulos,V., Rui,L.,
Hill,K.M., Yu,D., Domaschenz,H., Whittle,B., Lambe,T.,
Roberts,I.S., Copley,R.R., Bell,J.I., Cornall,R.J. and Goodnow,C.C.
TITLE A RING-type ubiquitin ligase family member required to repress
follicular helper T cells and autoimmunity
JOURNAL Nature 435 (7041), 452-458 (2005)
PUBMED 15917799
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAXUCZ010000013.1.
On May 29, 2024 this sequence version replaced XM_008769698.4.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR26360190.2819735.1,
SRR26643290.42607.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA5760383, SAMEA5760386
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on single protein-coding transcript
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-289 JAXUCZ010000013.1 75707272-75707560
290-666 JAXUCZ010000013.1 75736781-75737157
667-787 JAXUCZ010000013.1 75742577-75742697
788-1027 JAXUCZ010000013.1 75744030-75744269
1028-1203 JAXUCZ010000013.1 75744747-75744922
1204-1404 JAXUCZ010000013.1 75749864-75750064
1405-1537 JAXUCZ010000013.1 75751477-75751609
1538-1656 JAXUCZ010000013.1 75753300-75753418
1657-1769 JAXUCZ010000013.1 75755316-75755428
1770-2051 JAXUCZ010000013.1 75755918-75756199
2052-2266 JAXUCZ010000013.1 75756678-75756892
2267-2634 JAXUCZ010000013.1 75759460-75759827
2635-2799 JAXUCZ010000013.1 75760450-75760614
2800-2952 JAXUCZ010000013.1 75763411-75763563
2953-3166 JAXUCZ010000013.1 75765935-75766148
3167-3257 JAXUCZ010000013.1 75766994-75767084
3258-3390 JAXUCZ010000013.1 75767217-75767349
3391-3561 JAXUCZ010000013.1 75768923-75769093
3562-3677 JAXUCZ010000013.1 75769689-75769804
3678-10985 JAXUCZ010000013.1 75771807-75779114
FEATURES Location/Qualifiers
source 1..10985
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="13"
/map="13q22"
gene 1..10985
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/note="ring finger and CCCH-type domains 1"
/db_xref="GeneID:680586"
/db_xref="RGD:1563512"
exon 1..289
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 290..666
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
misc_feature 415..417
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/note="upstream in-frame stop codon"
CDS 436..3828
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/note="RING CCCH (C3H) domains 1; ring finger and
CCCH-type zinc finger domains 1; roquin-1"
/codon_start=1
/product="ring finger and CCCH-type domains 1"
/protein_id="NP_001417749.1"
/db_xref="GeneID:680586"
/db_xref="RGD:1563512"
/translation="
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELLANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILPDESTVDLPSRKPPALPNGIVSAGNTVTQLIPRGTDPGFDSTLKPVKLDHLSSSAPGSPPDLLECAPKSIPALPVNPHPVPPRAPTDLPPMPVPKPIQMVPRGSQLYPAQQADVYYQDPRGSAPAFETAPYQQGVYYTQPTCVSRFVRPPPSAPESAPPYMDHYSPYLQDRVINSQYGTQPQQYPPMYPPHYDGRRVYPAQSYTREELFRESPLPIDIPSAAVPSYVPESRERYQQVEGYYPVAPHPAQIRPSYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPPAFHQEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMNVESKGMRDQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQALAPQGAPTKSINISDYSAYGAHGGWGDSPYSPHPNLPPQGHLIEREKMCMAEVASHGKPLLSAEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREVNTLASQPQPPPLPPKWPGMISSEQLSLELHQVEREIGKRTRELSMENQCSVDMKSKLGTSKQAENGQPEPQNKVPTEDLTLTFSDVPNGSALTQENLSLLSNKTSSLHLSEDPEGGGDDSDSQRSGVVSSSAP"
exon 667..787
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 788..1027
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 1028..1203
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 1204..1404
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 1405..1537
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 1538..1656
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 1657..1769
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 1770..2051
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 2052..2266
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 2267..2634
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 2635..2799
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 2800..2952
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 2953..3166
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 3167..3257
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 3258..3390
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 3391..3561
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 3562..3677
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
exon 3678..10985
/gene="Rc3h1"
/gene_synonym="RGD1563512"
/inference="alignment:Splign:2.1.0"
ORIGIN
ggagtctgaggaagaggaaggggacgaggacaacgagcgacgggcggcggaggacgcggaggaggaaggggaggccgaccaacaagatggcccctgctgcaggagcagcctcagcagcagcaggtggggggctggaggcggcgctggcggtggcggctacggccgtggtccggcggcctgggacagattcagaatcgatggtggcagcggcggcagcggcggctgccgcgacggtggcgacggccgcagggactcggagctgagaggagctgctgctcggaccagcgcggttatatttcacactatgtgctgactgtatctacagaagatatttaaaaaaagataaacttttttccaagattttgattccagtggaatctttgctttagatttgtgtgtgtgtgtgcgtgttagtgaattgtaactccagaagcaatgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagactttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatgtgcctgaataaactccaccgtaaggcttgcccatttgaccagaccactatcaatacggacattgagctccttcctgtgaactcagcattactgcagctagtgggtgctcagatccctgagcaacaacccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaagaaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgcgagaggagtgggcttgaatagcactactcagagtgttctgagtcgcccaatgcagagaaaacttgtaactctggtccattgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatctttaggtgaacgcacagttacagagctcattctccagcaccagaatcctcagcaactctcttctaacctttgggcagcagtcagagctcggggctgccagttccttggaccagcgatgcaggaggaagctctgaagctggtcttgctggccttggaagatggttctgcattatcacggaaagtgttggttctctttgtggtacaaagactggagccacgttttcctcaagcctctaaaaccagcattggacatgttgttcagctcctctacagagcctcctgcttcaaggtcaccaaacgtgatgaagactcttctttgatgcagctgaaagaagaatttaggacttatgaagctctgaggcgagaacatgactcccagatagtgcaaattgctatggaagctggcttaaggattgcaccagaccagtggtcctctctgctttatggggaccagtctcataaatctcatatgcagtctattattgacaagttgcagacccctgcctcttttgcacagagtgttcaggagctaacaattgctctccagcgaactggagatccagcgaatttgaaccgactaagaccccatttggagctactagcaaacattgaccctagtccagatgctcctcctccaacatgggaacagctagaaaatggactggttgctgtacgtacagtagtccatggactggttgattatatccagaaccacagcaaaaaaggagcagatcaacaacagcctccacagcatagcaaatacaaaacatacatgtgtcgagatatgaagcaaaggggaggatgccctcgtggggccagctgtacgtttgcacattcgcaggaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacctttgagtgcctctttgggtcaacttaatgaggtgggcctgccttcagcgcccatacttcccgatgaaagcacagtggatttgcccagcagaaaacctcctgcactcccaaatggaattgtatcggcagggaacacagtgacacagctgattcctcgtgggacagaccccggctttgattccactctgaaaccagtaaagctagaccacctgagcagcagtgctccagggtcccctcccgacctgctggaatgtgcccctaagagtatccctgccttacctgtgaatccgcatcctgtacctccaagggcgccgacagatctgcctcccatgcccgtccccaaaccaattcagatggtgcctcgaggttcgcagttatatccagcgcagcaagcagacgtttactaccaggatccccgaggaagtgctccagcttttgagacagcaccttatcagcagggtgtgtactatacccagccaacatgtgtgtcccgctttgtccgacctccaccatctgctcctgaatctgctcctccatacatggatcattattcaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacaacagtacccacctatgtacccacctcactatgatggccgccgcgtataccctgctcagtcttatacaagagaagagctgttccgggaaagccctctacccatcgacattccatctgcagcagtgccgtcctatgtacctgagtccagagagcgataccaacaggtggagggctactacccagtggctcctcatccagctcagatcagaccttcataccccagggatcctccttatagtcgacttcctcctcctcaaccccatcctagtctggatgagctacatagaaggcggaaggaaataatggcccaactagaagaaagaaaggttatctctccgcctccttttgcaccttcaccaacattgcctcctgcgttccatcaagaggaatttttggatgaagacttgaaggtagctggaaaatacaaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatgaatgtagaaagtaaaggaatgagagaccagaggttggatcttcagagaagagcagtggaaactagtgatgatgaccttatcccatttggcgaccgaccaacggtatctcgatttggtgccatctctcgaacatccaaaacactgtatcagggtgctggcccaatgcaagctctggcacctcagggagcacccacaaaatctattaacatttctgattacagtgcatatggagctcatggtggctggggagactctccatactcgcctcatccaaacctacctcctcagggacacctcatagagagggagaaaatgtgcatggcagaagtggccagtcatggaaaaccccttctgtctgctgaaagagaacaattacggctagaattgcagcaactgaaccatcagatcagccagcagacccagctacgtggactagaggctgttagtaaccggctggtgttacagagggaggtgaacaccctggcaagccagccacagccccctccgctgcctccaaaatggcctggaatgatctcaagtgagcagctaagcttggaactgcatcaggtggaaagggaaattgggaagaggacccgggaattgagtatggagaaccagtgttctgtagacatgaaaagcaaactgggtacaagtaaacaggcagagaatggacagccagagccacaaaacaaggtccctactgaggatcttacgttgacattcagtgatgtaccaaatggatcagccttgacacaagagaatctcagcctcctgtcaaacaagaccagctctttgcacctgtcagaggaccctgagggaggaggagatgacagcgactcccagagatcaggagtggtttccagttctgctccctagaatatggcgcctgcttctaccttctgctcctaatcagttggtggggcacagggatagaaaaatggataacgtctaacctttttctctgagtggtcagtgaggtccagggaaagcaccggaggcaatgtgcaccaacaccactactaagcaaacctgcacatagttcacattgacgcattttttaattttaagaaaaagaaaattagcagtatctgcaagcaattcagattaaatttgtttttgttctgtgaatgaactttattttaataactttggacgccttggatccggggctttaaaacaaaagaagatattatatatacactctgtttgattaattgtatgatcttaatgaagtaggtttttcttgtattttggtattattacatacccagtgtataattcctttttcccagtcctttccaattctcacaaccctgtaaaccaaaataggcaaaatgcaccgtttccaagaattctgtggtaatagattggattattagaaactgtgcagcaaactaattttcctagagctattctttaacccaccccacagcagccctgtcctgggtcactagctttgtgggtagatacttgttttttacaacattaaaactttatttgagtagggtaaggttttagtttcaacttttcagagatatcaacatgcagttgattgtttgggccacacattttcatggtaaggattccttgcattctcgccataagatctgaaagcctatttagtgtttacaatgtttagttttaagtgaagattattttattttaagaatgaactctaaattggacataatggctcattcctgtattccccggactcaagacgttgaggcaagagaaaactggaataagaaaaaaacaaaggagcttcaacttgttaatagtgcaaatacctgattcctagtctatgttgagctcatattggaaaactgaagctgtgcttacaaattaaacttctcttgaaaccctagaatgggagaaccaggacaatgaaccatattctaaaacttggagatggctcagcagaaaagcactagctactctcccaggttcttcccagcaccggcaaggtggctcacaattgctggtaactccgcttctaagggaatggatactcttttctggcccttgtggacaccagacacacatgg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gtttttaaaaaataactttaacattgattcatatttgcttgggatagagcttatgtaatttaccaatcgtattgattgtatgtgattgtgccctgcagaggtatacttaacacgagtaatcttaagttagttaaggagccgtgagatttgagtcagaatagagatagctttatgggtagtgtgaattcccttctcagaatcagtgctacggaaaatgccattttaaaaggttttcctacattcctgtattttcccattgcctcagctccctattgttttctgacattttctacccacctgggtagaaaaattttaaaccatgaggttttttaaattgagctgacttttaagtgaatggactttgtgagatttttacattttccaaatgtttccagttgagaacaaatgatgggtcgaacttcaccagcctgtgaccaactccctactctctggccaacagtctccttgacagtgaggttttgtctgaaggcattatcttctgaaagttgtttttgtataggagaaaaagaaccttgcttgaaatggaacattccctttcttgtttaatctgcttagtatttccatgtttaaacagctttcagaacaaatgaggtggggaaaaagaactaggagtgtgtttagggctcccgaagtctggatctgaatgcgtatatgtacctcttgttgcatattcttgagaagattaaggccttctctcttaattttgtattatttgtgtgcatgttgtttatattaaagatggcacattttgttaaaatgctatttcctttcttaccttggaaactgactcagcctctcgttgctcctaagtagggtttaaggctcttgtaagttgcagataaaaggattcatttaacaaatagaaggaggtgattcaccttttggattgtaaatatatgaaagtgtctaaaggtctttatctgctttctgtcagcatttatattaaatgataaattaatgagga
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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