LOCUS       NM_001430270            1870 bp    mRNA    linear   ROD 10-MAY-2024
DEFINITION  Rattus norvegicus transmembrane protein 235 (Tmem235), transcript
            variant 1, mRNA.
ACCESSION   NM_001430270 XM_039087509
VERSION     NM_001430270.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Maher,G.J., Hilton,E.N., Urquhart,J.E., Davidson,A.E.,
            Spencer,H.L., Black,G.C. and Manson,F.D.
  TITLE     The cataract-associated protein TMEM114, and TMEM235, are
            glycosylated transmembrane proteins that are distinct from claudin
            family members
  JOURNAL   FEBS Lett 585 (14), 2187-2192 (2011)
   PUBMED   21689651
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Mineta,K., Yamamoto,Y., Yamazaki,Y., Tanaka,H., Tada,Y., Saito,K.,
            Tamura,A., Igarashi,M., Endo,T., Takeuchi,K. and Tsukita,S.
  TITLE     Predicted expansion of the claudin multigene family
  JOURNAL   FEBS Lett 585 (4), 606-612 (2011)
   PUBMED   21276448
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On May 8, 2024 this sequence version replaced XM_039087509.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.942096.1,
                                           SRR26360176.902857.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760433, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-350               JAXUCZ010000010.1  103585004-103585353
            351-431             JAXUCZ010000010.1  103587316-103587396
            432-569             JAXUCZ010000010.1  103587938-103588075
            570-1870            JAXUCZ010000010.1  103589566-103590866
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.2"
     gene            1..1870
                     /gene="Tmem235"
                     /note="transmembrane protein 235"
                     /db_xref="GeneID:688285"
                     /db_xref="RGD:1591141"
     exon            1..350
                     /gene="Tmem235"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    92..94
                     /gene="Tmem235"
                     /note="upstream in-frame stop codon"
     CDS             176..811
                     /gene="Tmem235"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transmembrane protein 235 isoform 1"
                     /protein_id="NP_001417199.1"
                     /db_xref="GeneID:688285"
                     /db_xref="RGD:1591141"
                     /translation="

MALLAALFLSAALGALLSFALLAAAVASDYWYILEVADAGSSGGARLSSHSGLWRTCEGQNSCVPLIDPFASSGLEASPSIQHLLSLHRTVMVVLPLSLILIVCGWVCGLLSSLSQSVPLLLATGCYFLLGGALTLAGLSVYICYSQLAFVEAARLYGLQHVQSVHISFGWSLALAWGSCASEVLSGALLLAAARLLTLSQHPGMPHSVIL"

     exon            351..431
                     /gene="Tmem235"
                     /inference="alignment:Splign:2.1.0"
     exon            432..569
                     /gene="Tmem235"
                     /inference="alignment:Splign:2.1.0"
     exon            570..1870
                     /gene="Tmem235"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccctcccatcgcctaaaccttcactagcctgcttcatttcagtcctgaaccccgactgttcccagcccacagttctcctcttcacctccctgacacccggtgcagccagtccctagcttctcttcccactcagccctgcctcccgtggtgcgctgctgtccgattccagctcacatggccctgctagccgcgttgtttctgagtgcagccctgggcgccttactcagtttcgcgctgctggcagcggcggtcgccagcgactactggtatatcctggaggtggcagatgctggcagctcgggcggcgcgcggctctcctcgcattctgggctctggcgcacctgtgaaggacagaacagctgtgtgcccctgatcgacccttttgccagctccggcctggaagcttctccctccatacagcacctgctctccctgcatcgcacagtcatggtagtcttgcctttgagcctcatcctcatcgtgtgtggttgggtctgcggcttgctcagctccctgtcccagagtgtccctctgctgctggccacaggctgctacttcttgctagggggcgccctgaccctggcagggctcagcgtctacatctgctactcacagctggccttcgtggaggctgcccgcctgtatggcctgcagcacgtgcagagcgtgcacatcagcttcggctggtcactggccctggcctggggctcctgcgcctcagaggtgctcagtggtgccctcctgctcgcagctgcccgtctcctcaccctgagccagcacccaggaatgcctcactctgtcatcctctgagtcccagtgtggcaggggggtggggagaaggtcatctcaggcaccctcaacgtttgctggagtcctggctgggaagaggccctggggatggcttgtggcagaagtgttcacctccactccatctggacttgagaaaggcaggtgggtagccggtgcctccagtcacgagcttttgatggtacggtctggctggggtgcgtcagggctctctgtgtccaggaggtgctcttgctctgggggatgtggcccactccaacctaggcagctgagactgtttggcgggacccctgggttcagttttgttccctttccccacgggaggttgatggggaggaggctcgaggctggatgggagggcacaccttctaggcaaggtggacctttgggagtcagtcctcctcctcagcaagctgctgcccatgctggcctggaacttctctttgtagcaacagccagggggatgtctgaaactggccacattaggggtgagctgggaccatgcctggccagcccctgggatgtctggacagaggaactccgcagagggaggcagaaacctgtcctggagagactcgctgcagatgtggatgggtcagtgcacaggtccaggcctgcagcccgctccctgcctggggcagcacggatgagaactgaaccagctctggccacacgagaggggacacacctgtgtcatgtatctggacagtaggtagctataacttaggggttgtgtagtaccccaaagccccaaacggctgattctggtgtagacccttcctgagtttgggatatgtactagggaagagaaggtagtatttttcaaggtttggtcccagcagtatccctaagccactttcagttgcttctaagggtctggggagcctctgaggggtctggggaacctctgaggagccaggtttaatgggacccactggggacaaaggactggagctgatggagaccctgccttccaatttgtgttcaaacctttgccattccatgtacgagcacttccaagtgtctgagtaaattagctgtgatgtatatttttcacttaca

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