LOCUS       NM_001427441            3006 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus serrate, RNA effector molecule (Srrt), mRNA.
ACCESSION   NM_001427441 XM_039090058
VERSION     NM_001427441.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Pabis,M., Neufeld,N., Steiner,M.C., Bojic,T., Shav-Tal,Y. and
            Neugebauer,K.M.
  TITLE     The nuclear cap-binding complex interacts with the U4/U6.U5
            tri-snRNP and promotes spliceosome assembly in mammalian cells
  JOURNAL   RNA 19 (8), 1054-1063 (2013)
   PUBMED   23793891
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3006)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3006)
  AUTHORS   Andreu-Agullo,C., Maurin,T., Thompson,C.B. and Lai,E.C.
  TITLE     Ars2 maintains neural stem-cell identity through direct
            transcriptional activation of Sox2
  JOURNAL   Nature 481 (7380), 195-198 (2011)
   PUBMED   22198669
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3006)
  AUTHORS   Gruber,J.J., Zatechka,D.S., Sabin,L.R., Yong,J., Lum,J.J., Kong,M.,
            Zong,W.X., Zhang,Z., Lau,C.K., Rawlings,J., Cherry,S., Ihle,J.N.,
            Dreyfuss,G. and Thompson,C.B.
  TITLE     Ars2 links the nuclear cap-binding complex to RNA interference and
            cell proliferation
  JOURNAL   Cell 138 (2), 328-339 (2009)
   PUBMED   19632182
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Jan 24, 2024 this sequence version replaced XM_039090058.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-239               JAXUCZ010000012.1  25029366-25029604
            240-379             JAXUCZ010000012.1  25029843-25029982
            380-508             JAXUCZ010000012.1  25034392-25034520
            509-655             JAXUCZ010000012.1  25034759-25034905
            656-844             JAXUCZ010000012.1  25035063-25035251
            845-1014            JAXUCZ010000012.1  25036944-25037113
            1015-1199           JAXUCZ010000012.1  25037203-25037387
            1200-1298           JAXUCZ010000012.1  25037491-25037589
            1299-1413           JAXUCZ010000012.1  25037672-25037786
            1414-1571           JAXUCZ010000012.1  25038623-25038780
            1572-1633           JAXUCZ010000012.1  25040008-25040069
            1634-1712           JAXUCZ010000012.1  25040169-25040247
            1713-1901           JAXUCZ010000012.1  25040475-25040663
            1902-2075           JAXUCZ010000012.1  25040971-25041144
            2076-2229           JAXUCZ010000012.1  25041239-25041392
            2230-2423           JAXUCZ010000012.1  25041483-25041676
            2424-2580           JAXUCZ010000012.1  25041820-25041976
            2581-2682           JAXUCZ010000012.1  25042120-25042221
            2683-2806           JAXUCZ010000012.1  25042325-25042448
            2807-3006           JAXUCZ010000012.1  25042648-25042847
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..3006
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /note="serrate, RNA effector molecule"
                     /db_xref="GeneID:686980"
                     /db_xref="RGD:1591241"
     exon            1..239
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    126..128
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /note="upstream in-frame stop codon"
     exon            240..379
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     CDS             258..2882
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /codon_start=1
                     /product="serrate RNA effector molecule homolog"
                     /protein_id="NP_001414370.1"
                     /db_xref="GeneID:686980"
                     /db_xref="RGD:1591241"
                     /translation="

MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPRHELSPPQKRMRRDWDEHSSDPYHSGYDMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEIDLGVPPPIMKSFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLKVFLSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTEHDLRILEQEEEEEQAGKTGETSKKEEGRAGPAPGDGERKVNDKDEKKEDGKQAENDSSNDDKTKKPEGDGDKEEKKEEAEKEAKKSKKRNRKHSGDDSFDEGSVSESESESESGQAEEEKEEAEEALKEKEKPKEEEREKPKDTAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPAPTSLPSQNPILKNITDYLIEEVSAEEEELLGSSGGPPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYPNEDEMPNRCGIIHVRGPMPPNRVSHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPPGPAQILPPGLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRGQGYPGKPRNRMVRGDPRAIVEYRDLDAPDDVDFF"

     exon            380..508
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            509..655
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            656..844
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            845..1014
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1199
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1298
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1413
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1571
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..1633
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1634..1712
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1713..1901
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            1902..2075
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2229
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2423
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            2424..2580
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            2581..2682
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            2683..2806
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
     exon            2807..3006
                     /gene="Srrt"
                     /gene_synonym="AABR07035787.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agttttagtttggtcgggggtcttgtttgtagttggaggccgagctccgtgggtgacgtaagctgcgcgcgcgactcctctaaccctccgcggtcccgctctcatctttccattcgcctctgggctaagaatccctgcgtctccttcaaaccctctttgcggtccattgtcgcgcgttccggtccgcccggaaaacaagcccgccggcgcgcgcttccaacggccccgaccgctgccaggcctcctctgacagcaccatgggtgacagtgatgatgaatacgatcgaagacgcagggacaaatttcgaagggagcgcagtgactatgaccgttcccgggaaagagatgaaagacggcgaggggacgattggaatgaccgagagtgggaccgtggtcgtgagcgccgcagtcggggtgaatatcgagactatgataggaaccgaagggagcgcttctctccccctcgacacgaacttagtcccccacagaagcgcatgcggagagactgggatgagcacagctctgacccataccacagtggctatgacatgccttatgctggggggggtgggggaccaacttacggcccccctcagccctggggccacccagacgtccacatcatgcagcaccatgtcctgcctatccaggccaggctgggcagcattgctgagattgacttgggtgtgccgccacctataatgaagtccttcaaggaattcctcctgtctctggatgactctgtggatgagaccgaggcagtcaaacgctacaatgactacaagctggacttccggaggcagcagatgcaggattttttcctggctcataaagatgaggagtggttccgatcgaagtaccaccccgatgaggtggggaagcggcggcaggaggcccggggggccctgcagaaccgactgaaggtgttcctgtccctcatggagactggctggtttgataaccttctcttggacatagacaaagctgacgctatcgtcaagatgctagatgcagctgtcattaagatggaaggtggcacagagcacgatctccgcattttggagcaggaagaggaggaggaacaggcaggcaagactggggagaccagcaagaaagaggagggccgagctggaccagccccgggggatggagagcgcaaggtcaacgataaggatgagaagaaagaagatggaaaacaggctgaaaatgacagttccaacgatgacaaaactaagaaacctgagggtgatggggacaaggaggagaagaaagaagaggctgagaaggaagccaaaaagagcaagaagcggaacaggaagcacagtggtgatgacagcttcgatgagggcagtgtatccgagtctgagtctgagtctgagagtggccaggctgaggaggagaaagaggaggctgaagaggcacttaaagaaaaggagaagcccaaagaagaggagcgggagaagcctaaggatactgcagggctggagtgtaagccccggcccttgcataagacttgctctctcttcatgcgcaacattgcgcccaacatctcaagggcagagatcatttctctttgtaaaagatacccaggctttatgcgagtggcactgtcagagccccagccagagaggaggtttttccgccgtggctgggtgacttttgaccgcagtgttaacattaaggagatatgttggaacctgcagaacatacgactccgggagtgtgaactgagtcccggtgtgaacagagacctgactcgtcgtgtccgcaacatcaatggcattacacagcacaagcagatagtgcgaaatgacatcaagttggcagccaagctgatccacacactggatgacaggactcagctctgggcctctgagcctgggacgcctcctgcgcccacaagcctgccctctcaaaaccccatcctgaagaacatcaccgactatctgattgaggaagtgagcgctgaggaggaggagctcctggggagcagtggaggacccccgcccgaggagcctcccaaggaaggcaaccctgcagagatcaatgtggagagggatgagaagctgatcaaggtcttggataaacttcttctctacttgcgtattgtgcactctctggattattataacacctgtgagtaccctaatgaggacgagatgccaaaccgctgtggcataatccacgttcgggggcccatgcctcccaaccgagtcagccacggagaagtgctggagtggcagaagactttcgaggagaagctgaccccgctgctgagtgtgcgcgaatccctttctgaggaagaggcccagaagatgggccggaaagacccagagcaggaagtggagaagtttgtcacctccaatacacaggaactgggcaaggataagtggctatgtcctctcagtggcaagaaattcaagggtccagagtttgtgcgcaaacatatcttcaataagcacgctgagaagatcgaggaggtgaagaaggaggtggcgttcttcaacaacttcctcacagatgccaagcgcccagctttgcctgagatcaagccagctcagccacctggccctgcccagatactccccccaggcctgaccccaggacttccctatccacatcagacaccacagggcttgatgccctatggtcagccccggcctcccatcttgggctatggagctggtgctgtccgccctgcagtcccaacaggagggcctccatacccccatgctccatatggtgccggccgtgggaactatgatgcttttcgaggccaaggttatcctgggaaacctcggaacaggatggttcgaggagacccaagggctatagtggagtatcgcgacctggatgccccggatgacgttgatttcttttgaaccagccacgtcccctcattctgcatcgctgcatctgtacctgtgacctctttatcctatcagctgagaatttttttgtacgttattttacctgctagtaaacaacttgagtactgtgtgttaa

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