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Previous release (v1)
2024-11-23 11:14:48, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001408918 13671 bp mRNA linear ROD 03-APR-2024 DEFINITION Rattus norvegicus argonaute RISC catalytic component 2 (Ago2), mRNA. ACCESSION NM_001408918 XM_039080222 VERSION NM_001408918.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 13671) AUTHORS Liao,B., Gao,F., Lin,F., Yang,S., Xu,Z. and Dong,S. TITLE LncRNA CASC7 inhibits myocardial apoptosis in myocardial ischemia-reperfusion rats by regulating MiR-21 expression JOURNAL Panminerva Med 64 (3), 414-415 (2022) PUBMED 31362482 REMARK GeneRIF: LncRNA CASC7 inhibits myocardial apoptosis in myocardial ischemia-reperfusion rats by regulating MiR-21 expression. REFERENCE 2 (bases 1 to 13671) AUTHORS Zou,Z., Lin,Q., Yang,H., Liu,Z. and Zheng,S. TITLE Nrp-1 Mediated Plasmatic Ago2 Binding miR-21a-3p Internalization: A Novel Mechanism for miR-21a-3p Accumulation in Renal Tubular Epithelial Cells during Sepsis JOURNAL Biomed Res Int 2020, 2370253 (2020) PUBMED 32923478 REMARK GeneRIF: Nrp-1 Mediated Plasmatic Ago2 Binding miR-21a-3p Internalization: A Novel Mechanism for miR-21a-3p Accumulation in Renal Tubular Epithelial Cells during Sepsis. Publication Status: Online-Only REFERENCE 3 (bases 1 to 13671) AUTHORS Yang,Y., Wang,W., Chang,H., Han,Z., Yu,X. and Zhang,T. TITLE Reciprocal regulation of miR-206 and IL-6/STAT3 pathway mediates IL6-induced gefitinib resistance in EGFR-mutant lung cancer cells JOURNAL J Cell Mol Med 23 (11), 7331-7341 (2019) PUBMED 31507089 REFERENCE 4 (bases 1 to 13671) AUTHORS Roger,E., Dumortier,O., Pisani,D.F., Gautier,N., Van Obberghen,E. and Hinault,C. TITLE Argonaute-2 is associated to brown adipose tissue activation JOURNAL Biochim Biophys Acta Mol Basis Dis 1865 (9), 2393-2402 (2019) PUBMED 31152866 REMARK GeneRIF: The partial loss-of-function of AGO2 in mature brown adipocytes is sufficient to lead to a diminished expression of UCP1 associated to a decreased uncoupled respiration. The downregulation of AGO2 in mature brown adipocytes induces a phenotype compatible with decreased thermogenic activity. REFERENCE 5 (bases 1 to 13671) AUTHORS Li,M., Dong,Y., Chen,Z., Meng,L., Liu,X., Zhang,X., Wang,H., Mao,W., Zhang,J., Jiang,Z., Huang,T., Hu,J., Luo,P., Korner,H., Ying,S. and Li,J. TITLE MicroRNA-31 Negatively Regulates Interleukin-34 Expression In Vitro JOURNAL Immunol Invest 48 (6), 597-607 (2019) PUBMED 31012336 REFERENCE 6 (bases 1 to 13671) AUTHORS Chendrimada,T.P., Gregory,R.I., Kumaraswamy,E., Norman,J., Cooch,N., Nishikura,K. and Shiekhattar,R. TITLE TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing JOURNAL Nature 436 (7051), 740-744 (2005) PUBMED 15973356 REFERENCE 7 (bases 1 to 13671) AUTHORS Meister,G., Landthaler,M., Patkaniowska,A., Dorsett,Y., Teng,G. and Tuschl,T. TITLE Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs JOURNAL Mol Cell 15 (2), 185-197 (2004) PUBMED 15260970 REFERENCE 8 (bases 1 to 13671) AUTHORS Thonberg,H., Scheele,C.C., Dahlgren,C. and Wahlestedt,C. TITLE Characterization of RNA interference in rat PC12 cells: requirement of GERp95 JOURNAL Biochem Biophys Res Commun 318 (4), 927-934 (2004) PUBMED 15147961 REFERENCE 9 (bases 1 to 13671) AUTHORS Tahbaz,N., Carmichael,J.B. and Hobman,T.C. TITLE GERp95 belongs to a family of signal-transducing proteins and requires Hsp90 activity for stability and Golgi localization JOURNAL J Biol Chem 276 (46), 43294-43299 (2001) PUBMED 11553639 REFERENCE 10 (bases 1 to 13671) AUTHORS Cikaluk,D.E., Tahbaz,N., Hendricks,L.C., DiMattia,G.E., Hansen,D., Pilgrim,D. and Hobman,T.C. TITLE GERp95, a membrane-associated protein that belongs to a family of proteins involved in stem cell differentiation JOURNAL Mol Biol Cell 10 (10), 3357-3372 (1999) PUBMED 10512872 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ010000007.1. On Apr 3, 2024 this sequence version replaced NM_001408918.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR26643284.10386.1, SRR26643429.27712.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-168 JAXUCZ010000007.1 106993957-106994124 c 169-364 JAXUCZ010000007.1 106955776-106955971 c 365-485 JAXUCZ010000007.1 106946999-106947119 c 486-667 JAXUCZ010000007.1 106941929-106942110 c 668-804 JAXUCZ010000007.1 106939753-106939889 c 805-939 JAXUCZ010000007.1 106938407-106938541 c 940-1027 JAXUCZ010000007.1 106937912-106937999 c 1028-1175 JAXUCZ010000007.1 106936748-106936895 c 1176-1295 JAXUCZ010000007.1 106935730-106935849 c 1296-1418 JAXUCZ010000007.1 106935478-106935600 c 1419-1552 JAXUCZ010000007.1 106934681-106934814 c 1553-1737 JAXUCZ010000007.1 106932588-106932772 c 1738-1897 JAXUCZ010000007.1 106930876-106931035 c 1898-1988 JAXUCZ010000007.1 106927301-106927391 c 1989-2183 JAXUCZ010000007.1 106924875-106925069 c 2184-2318 JAXUCZ010000007.1 106922740-106922874 c 2319-2420 JAXUCZ010000007.1 106919674-106919775 c 2421-2620 JAXUCZ010000007.1 106918409-106918608 c 2621-13671 JAXUCZ010000007.1 106907209-106918259 c FEATURES Location/Qualifiers source 1..13671 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="7" /map="7q34" gene 1..13671 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="argonaute RISC catalytic component 2" /db_xref="GeneID:59117" /db_xref="RGD:621255" exon 1..168 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /inference="alignment:Splign:2.1.0" misc_feature 21..23 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="upstream in-frame stop codon" CDS 147..2729 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /EC_number="3.1.26.n2" /note="golgi ER protein 95 kDa; argonaute2; argonaute 2, RISC catalytic component; eukaryotic translation initiation factor 2C 2" /codon_start=1 /product="protein argonaute-2" /protein_id="NP_001395847.1" /db_xref="GeneID:59117" /db_xref="RGD:621255" /translation="
MYSGAGPVLASPAPTTSPIPGYAFKPPPRPDFGTTGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA"
misc_feature 165..2723
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="protein argonaute; Provisional; Region: PLN03202"
/db_xref="CDD:215631"
misc_feature 1080..1097
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with guide RNA. /evidence=ECO:0000250"
misc_feature 1308..1310
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from
UniProtKB/Swiss-Prot (Q9QZ81.2); phosphorylation site"
misc_feature 1323..2600
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="PIWI domain, Argonaute-like subfamily. Argonaute is
the central component of the RNA-induced silencing complex
(RISC) and related complexes. The PIWI domain is the
C-terminal portion of Argonaute and consists of two
subdomains, one of which provides the...; Region:
Piwi_ago-like; cd04657"
/db_xref="CDD:240015"
misc_feature 1719..1847
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with guide RNA. /evidence=ECO:0000250"
misc_feature order(1734..1736,1746..1748,1782..1793,1800..1802,
1824..1826,1833..1835,1845..1847,1857..1859)
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="5' RNA guide strand anchoring site [active]"
/db_xref="CDD:240015"
misc_feature 1908..1919
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with GW182 family members.
/evidence=ECO:0000255"
misc_feature order(1938..1940,1944..1946,2154..2156,2568..2570)
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="active site"
/db_xref="CDD:240015"
misc_feature 2097..2129
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with GW182 family members.
/evidence=ECO:0000255"
misc_feature 2247..2249
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="4-hydroxyproline.
/evidence=ECO:0000255|HAMAP-Rule:MF_03031; propagated from
UniProtKB/Swiss-Prot (Q9QZ81.2); hydroxylation site"
misc_feature 2274..2279
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with guide RNA. /evidence=ECO:0000250"
misc_feature 2406..2432
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with guide RNA. /evidence=ECO:0000250"
misc_feature 2517..2585
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2);
Region: Interaction with guide RNA. /evidence=ECO:0000250"
misc_feature 2619..2621
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from
UniProtKB/Swiss-Prot (Q9QZ81.2); phosphorylation site"
misc_feature 2631..2633
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from
UniProtKB/Swiss-Prot (Q9QZ81.2); phosphorylation site"
misc_feature 2640..2642
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from
UniProtKB/Swiss-Prot (Q9QZ81.2); phosphorylation site"
misc_feature 2649..2651
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from
UniProtKB/Swiss-Prot (Q9QZ81.2); phosphorylation site"
exon 169..364
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 365..485
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 486..667
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 668..804
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 805..939
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 940..1027
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1028..1175
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1176..1295
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1296..1418
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1419..1552
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1553..1737
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1738..1897
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1898..1988
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 1989..2183
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 2184..2318
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 2319..2420
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 2421..2620
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
exon 2621..13671
/gene="Ago2"
/gene_synonym="eIF2C 2; Eif2c2"
/inference="alignment:Splign:2.1.0"
ORIGIN
gccgccccggccgcgtcgggtaaacctgttctgcgaggcggccgcgccggggcggatcgagcggccggcgggtcctcgcggctcgcggcgtcggggcccgtggagcgcgcggccggccctcggccgcggccctcggcagcgccaccatgtactcgggagccggccccgttcttgcgtctcctgctccgacaacatcacccatcccaggatatgccttcaagcctccacctcggccggatttcggcaccaccgggagaacaatcaaactacaggccaatttctttgaaatggacatccccaaaattgacatctatcactatgaattggacatcaaacctgagaaatgccctcggagagtgaacagggaaatagtggagcacatggtccagcactttaaaacccagatcttcggggaccggaagccagtgtttgatggacggaagaatctgtacacagctatgccccttccaattggcagggacaaggtggaactggaggtcacgctgccaggagaaggcaaagatcgcatctttaaggtatccatcaagtgggtatcctgcgtgagcttgcaggcgttacacgatgcactttcggggcggctgcccagcgtccccttcgagacgatccaggccctggacgttgtcatgaggcacttgccatccatgaggtacacccctgttggccgttccttcttcactgcatcggaaggctgttccaaccctctgggagggggcagagaagtgtggtttggcttccatcagtccgtccgaccttctctttggaaaatgatgctgaacatcgatgtatcagcaacagcattttacaaggcacagccagtgatcgagtttgtttgtgaagtgttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaattaaaggtctaaaggtggagataacgcactgtggtcagatgaagaggaaataccgtgtctgcaatgtgacccggcggcctgccagtcaccaaacgttcccactgcagcaggagagtgggcagacagtggagtgtacagtggctcagtacttcaaggacaggcacaagctggttctgcgctacccccacctcccatgtttacaagttggacaagagcagaaacacacctaccttcctttggaggtctgtaacatagttgctggacagagatgtataaaaaaattaacagacaatcagacctcaaccatgatcagagcaactgccaggtcagcgcccgatcggcaagaggagatcagcaaattgatgcgaagtgcaagtttcaatacagacccgtatgttcgtgaatttgggatcatggtgaaagatgagatgacagatgtgacagggcgggttctgcagccgccctccatcctctacgggggcaggaacaaagcgattgccacccctgtccagggtgtgtgggacatgagaaacaagcagttccacacgggcatcgagatcaaggtgtgggccatcgcctgctttgcaccccagcgccagtgtacagaagtccatctcaagtccttcacagagcaactgaggaagatctcaagagatgctgggatgcctatccagggtcagccctgcttctgtaaatacgcacagggggcagacagtgtggaacccatgttccgacacctgaagaacacatacgctggtctccagctggtggtggttatcctgcctggcaagactcctgtgtacgcggaagtcaagcgtgtgggagacacggtgctgggcatggccacgcagtgtgtccagatgaagaacgtgcagaggaccacgccacagaccctatccaatctctgcttaaagatcaatgtcaaactgggaggagtcaacaacatcctgctgccacagggcaggcctccagtgttccagcagcctgtcatcttcctgggagccgatgtcacccacccaccagctggggatgggaagaaaccttcaattgctgccgtcgtgggcagcatggacgcacaccccaaccgctactgtgccaccgtgcgcgtacagcagcaccgacaggagatcatccaggacctggctgctatggtgcgagagctgctcattcagttctacaaatctacacgcttcaagcccacccgcatcatcttctaccgagacggcgtctctgagggccagttccagcaggttcttcaccatgagctcctggccatcagagaggcctgcataaagctggagaaggactatcagccagggatcacattcatcgtggtgcagaagcggcaccacacacgtctcttctgcacagacaagaatgagcgggttggaaagagtgggaacatcccagcaggcacaaccgtcgacacaaagatcacccacccaactgagtttgacttctacctgtgcagtcatgctggcatccaggggacaagccgtccttcccactaccacgtgctctgggatgacaatcgtttctcttctgatgagcttcagattctgacctaccagctgtgtcacacctacgtgcgctgcacacgctctgtgtcaattcctgcgccagcttactatgcccacctggtggccttccgagccaggtaccacctggtggataaagaacatgacagcgctgaaggaagccatacctctgggcagagcaacgggcgagatcaccaggcgctggccaaggcggtccaggtccaccaggacacactgcgcaccatgtactttgcttgacatgttgtattgtttagcgattgtgtaccaagttggattcacacgagaccagctacactcagaccaacagatgcccagcccttccgtgacagccagcatcgaacatgagacgtctttggttttattagatcctccattttccagaatgccttccgtcccagatttcagacttggattttgagctacaggcctgtatgagacccccattgtaggaaacgtggtttgccaaacctataagctgctcactgagagtctcgtttcctaaaagcaaaaaacaacaaaatgtcctaaaaccagtctatgaactctcagggctttaaaacattttaatttatttggtcattcgatttacttgtttttaacacctgattctcaatgaaatcgatgggctcaaactagctgtgaaggctctgagcgggaaagcagcaccattaccattggggttttaaagcctggccctagaagttgtcaccagtgttgagtgctaagggctgccatgtaccctgcagccccagggcactcggctgctaggtatccacagtgtccctcgctggccactgcctgccctcgaggcctgagtgaaggcatagtggccaaggggatggtcacgtgtgtttagggcagtgacaagtttgagagattggcagacaagtgccattttgataaaaatttatttaaaaagagaaaaaagacaatatactgacagtctaatcataagatttgtcctgtaggactgtgacatttattttccaaagtttctaaagaatacgggtctgtggtgatagatacagtacaatcctttttcactgttatgtctttaatgtaagagaagaatatatgtatctggtttgcagtattaatgtggtaggtagatgctgtttcccttttgttgacgaggggcgcttcttgtgacctgcttcacgtaccaggagctgtggagcctggagacagtccacctcttgtggcttttagtgcttaagtagaggaatatgcacctggcttcacgtaacagcgatgcctccttcttccctccccacccccagtgtggactgtgtagcctgtacctctgggaaggacagtgtgcttgccagtaatctgccgtcctccctgcctcgtccgtgtgtgtcgctcagctgatgaagcacaagtggaatttatttattctcccatggctgggaaacaagttcacgtaagcgtgcactgctctcagctatgtgcagttatggaaggtgggtttcataggatctatgcactgaagtggagagagagctgctcacagtggctctgccggcatgggattggcaggtaggactggaacatgccgaggagctgacggtgggcaaggccagcagggaaggcacggacttgctctgggtgtggcttgcttctgggccccaatgtgggtttgccagcctagagaccattgaactgaggggccactacgagtggctctgcaaatggcagcagccacctctgagtatgtgtcctgtggggctttttgtgcttgtaccgaagctgcgtgagcatccggtccgttccacagacaagttcccggaaggagacgagccttctcttctgtgctgctttgtgctctgtgggttttttctgcccctgctgacggccctcatcccccagctctgcgtcatttacctctgaccctgcggtggggggagggtgcccaccctctcccccagctgtggcacctcatgctagaggacacagtaccacctttaccccttcacccgtctgcactggggctggtgggaagggcgggcgcagtcacctgggaagtcacgccctcagcaggtgtgcgtctgtgtatgcatgtgggtgtcttactaatgacagtagtctcttcttgctgtgtctttagaaatcttttaaagtgacagacccctagtctaagaagcactgggactgcctgctatcccattggcaagtggcactttctcaaactgtttccgaaaggatataaaaacactcagctcacctaacatggtcaggctggagaactggttaaactagtgaacttttagaatctgagatggttttcagccattcttagaaccatgggttcctaaggtgtggcttcagccccttgccacgggatcttagtcatgcaagtgagtttttagagtgcagagtctcaggcctgctgccagcttcttggacctggcccttgcagccagctgggtatctgtgtttgaggccacccccacccacccaccaccatggctctgtgggctttcttaggccgtcccccatgatgccaggggaacaggaaggaagccctatgagagctctcacacggaggaacacttgtgggctggggggaaaatctgagctggaagttttgttttgatcatcttgaaggataagttttcttttctgatgggccaaagtacttgcagaaaggactttctgtagtagcccatgcttacttgtgacacttttaatatgaaatgtacccccagaccaaatgtcctaattgagttagatgcacatcgtccacgtgtctgatggcgcagagcttgtgaatggctatagttccagtttctcaggtaaataattgttcccccaacttctgccctccccttattatcaccattcattctgagaccgtgtgagacctcagtgtggtagcagttcagctaccttctgcaggcgccagcttttttttttttttttttgccgcacctgtacccaagactggtgacaggtgccgttatctcctgaggtgacacctggccaagtttgaagactgcccacgtgctagctgtgttcccaaccccactgttaagtaaggtgtgccttgctttaagcaaactgaatgtgattatgttgttgtgctctgtatccatttggaaggaaaactaggacgtgcctgtctctttaagagaggctacccaattagactctctcacagtggcactcttcctagtacaatgtaagatactcactcttaaaaacccatcatgacttccattcctttaccactgtgtacaccatgcagcaggtcgtgtcccctcccttctccccccatgctgatgaagcgatgggaaactctagggagacatcgaggccccattctgtagattagcccttagtgatactagcaaaactcctaccctcgtcactgcgtgttataagcctagattgtcctagtccccactgattctgaaaccgagcacacctgtacttctggagagcggctgtttggttttggcttcattctcccatttggggaaatcctcacatgcacacttgataccactttgggtctgctctgccttctccagatttggcctcttggccactcctcacacccacccgcttgctggcctccaggccacagggcactgccagtggggagactgctagctccgtgctgtctgcagctggcccaacacctgtattcctgatgtttacctgttactgagcgcttgatagaaagacagcccctgcagtggggttgggtgggtttttgggtttttttctttccgttgtcttgtattttgttgtttttaaatgcaaatgttgtatttatttttttttcctctcctgctctggtttgacttagctgactggctatcccaatgcatgtggtacctgatggacatggtagagactatttccccccacttttatatatgacccaatgtttaccttcaggcttgctaatgctttatttttggaagccacagatgtagtttttctggatgaattgtttttcctatagatgcagcagtatgcttttgcattgatctgcagggtgatttgaattttatttttacaagcagtttttcaatcaaattctatatttgatacaatgtgttaagggtagaccagcccccgagtcatgcagctggggacccctgagtgtccaggaggccttagggctgggtggcttctcttggtcgtccctgtggtggtagcactggtcagtcacaggagccttcagggtcctttagcgtagccctgacctcttgggttgttacaaggattttttccatgggcattttgctacgcagacagtggacaatccggtggccccagacaagccataagcaacctttctgtgacctctccctgactcatctttcacacccatgggataaggaatgtgcccgagtagacgcgacactccttggtgttcatacgcctcacttgtgaatacagacatttgtttatgttctaagcccttccctgcagtacccatgctggctggctcactatagacagagcacatgcaactcttgtcatgagcgccctgttgtaagcatgctgactcctgtaagttgcactgagtgttgacagttttctttcttgtgtccaactccctatctgctgtactcatttgaagtgattgtaaacagattcacagtggcaagagtgatgtagatgtgggacattgcctcacttctgcgattcccaacacacatttcagtattaatatgctagagtgtgcggactgggctctattctctcgagcattgtgggctagccttgtctctcactctgaccagaagttctccccctctatacaggacagcatgctcttcgagacctgaaggcttgaatgttaactaacatattagttaggagtctttgtgacactttggtctgtttaatttaattttcttgtgatctgcaaggcctgccccccaaagcatgtcaatctcgttctgtgtggtctttgtgagcttggacagcatatgaatagcccagtcggtgttaacaggccattgcagcattcgtgggccagccttcaacttaaagctgtgatcactgctttgtcagactgtcatttgtggtccatccatgggagacctgaagcctggtgcagcccttcatgccttgtgagcctgctgggatcgaagtacgtgttctgtttagccccacatgaactgtctgtggtcagggtacccagtgtctgaaacaaaaggaattatcacactcaaaccaccgagagagagagagagagagagagagagagagagagagagagagagagagagagaggtgagtgttgtgagtgtgtgtgagtgtgagagtatgagtgtcagtgccattgcagagccctcaccttgtgtctttggatttgttcagccattttatttgtctcaagttgaatgtatcggcttagccaaatcactacagaaggtggtttctaaaaccttttagacagatgcataaaagctacctctgacttctcatagatttgtgtttgctctgaagcatcatcgctatccacactgaatatagccaaaatatcgcctgaataaactgagttgtgaacgcctctgttcggttccggcttgaaaacgtgtgtgccatactgtgacctggggcggcggctctcctcagcaccacccagctacaagattctagcatccaagaggctggtggagggggcttctctgcatggggagcacacaccctccacgctggtgggcgtggctgtgcagagccacccgtggctgagcctggggatagtctgttcctgcctggttttgctttcctatttaataatgtaagaaggcatctttaaccctgctttgcttatgaatggattgaaagtggcttccctgctctctcctccctttttatacactataaactcataaaggtgcttaaacaccgactcttgtgcagataatgtatttaagcagttgcatggattcatggattcagatagcgcaggcatagctgaccttgggacccttgtgaaagtgaaggacggaaggctccgtgctccgtttggaaggagcagtggactctgcttgaggagaagttccctctagtcttggcagtgcaggtctaacttaacagatttgtcatggggacccaccgcctctgaccagctgtcctgtggttgtccactttgctgtccagaaggtcatccttttacaccatggttccacctgtatcccctcgggctccctcctcctaaagtttccttgggaagtcagcatacgatcctagatccctccattagttgggttagggaagcctgaggggcagatggaccgtgtcatgaggcaggtgcctgggtactggctgggcagggcagggcactcttctctaggttatctctgtgccctaacccccaccccgttgtagtattgcgtgggtgggggttgacatcttccattctttcgacttggacagctcagtacccctagaatccctcacatatatttctctgtgtggagaaccggaggcatggagggttacttaggactctgatttggctgggatttgaaaatcccaggaagcaaagggtgctacatatgttatgcttagggtgacacccaggtgtggtggtgtaagccacagcctcagggcaccagcacagaggcaggcagcctccccactcaagaggcttgtgaaggataccaaaccagcaggagccctggccactgcagtgttcagctaacacttctttctactggtggaagtgagaacactgaaaccttccaaaggcctggcagttctagtttctccattcctgagggctaaaaggctgaacgagctcctgctttgcttagagctgcctttatttgaattcatttagaggtaaagcatctttaaggaccgtatctcttccctgtgccaccagccagtaggtggcggaggcccttttcattcagttctcctgcatcttcaagctctgggacatcagtgaggtcacaagagcacccacagcagccatcagcagagtgagtactcaaacgggacagaaagcagaaactgtacaggttgtaatggccactccaggttgtgacacatcctgcacagcaggtggcctcagcccgcccttcctcttgaaagtctgttttcggtgtcccttcagaatcatgctgggctggttgttaggtgaccctacctagaagctccgcgagccctcactctttcttgcagactgtgatgccaccttgtagcctgcggctgtggaaacacagtcctatcctgggttctctgtgccctgaagtgcagttgcacctctgctggggtttggtcaggcactggcaaaggctacttgctggccttgtgtttgctgcccctcagcgagaccgtgtgttctagtggaagtagacttagagggaattggaatcatgtctttgtgaatcgagtgtgaagtcctcgggcctaaggtgctacttggtcctaatgttttggagtgcttttctgttgttgttactccattgttacttactctgtcctatgacactgggggagactgctcgcttgggtgtggtgtcgcttac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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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