LOCUS       NM_001395021            2483 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 120 like 2 (Zfp120l2), mRNA.
ACCESSION   NM_001395021 XM_039084897
VERSION     NM_001395021.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On May 26, 2021 this sequence version replaced XM_039084897.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               JAXUCZ010000009.1  121516799-121516943
            146-272             JAXUCZ010000009.1  121531316-121531442
            273-333             JAXUCZ010000009.1  121531632-121531692
            334-2483            JAXUCZ010000009.1  121532835-121534984
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q38"
     gene            1..2483
                     /gene="Zfp120l2"
                     /note="zinc finger protein 120 like 2"
                     /db_xref="GeneID:102551714"
                     /db_xref="RGD:7659002"
     exon            1..145
                     /gene="Zfp120l2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    53..55
                     /gene="Zfp120l2"
                     /note="upstream in-frame stop codon"
     CDS             143..2122
                     /gene="Zfp120l2"
                     /note="zinc finger protein 431-like; zinc finger protein
                     709-like; zinc finger protein 120-like"
                     /codon_start=1
                     /product="zinc finger protein 120 like 2"
                     /protein_id="NP_001381950.1"
                     /db_xref="GeneID:102551714"
                     /db_xref="RGD:7659002"
                     /translation="

MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLSAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQRSHLQRHNRTRTGEKLYESKPRDKAFTYDSQLQNLERIHTGEKPYKCNQCGKAFERHCNLGRHKLIHTGRKSYKCNQCGKAFSQNSHLQTHNSTHSREELYKCKQCGKSFTCRNELQSHKRIHTGEKSYECNQCGKAFKSHLYLQVHKRIHTGEKPYVCDQCGKDFVVQRDLKRHKRTHTGEKPYKCDQCGKAFASHRYLQVHKRIHTREKLYECDQCGKAFAQLGHLQVHGITHTGEKPYECDQCGKAFASHSYLQVHKRIHTGEKPYVCDWCGKAFASHSYLQVHKRIHTGENLHECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRIHTGEKPYKCNECGKAFVWIGNLRTHKVLHTGEKPYKCNECGKAFACSTSLRTHKAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYQCNECGKAFVFDASLRKHRAIHTGVKPYECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKKTHTY"

     misc_feature    152..274
                     /gene="Zfp120l2"
                     /note="KRAB box; Region: KRAB; pfam01352"
                     /db_xref="CDD:460171"
     misc_feature    359..1603
                     /gene="Zfp120l2"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    374..517
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    539..601
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    623..685
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    707..769
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(722..724,728..730,734..736,740..745,752..757,
                     764..766,806..808,812..814,824..829,836..841,848..850,
                     890..892,896..898,902..904,908..913,920..925,932..934)
                     /gene="Zfp120l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    791..853
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    875..937
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    959..1021
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1043..1105
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1058..1060,1064..1066,1070..1072,1076..1081,
                     1088..1093,1100..1102,1142..1144,1148..1150,1160..1165,
                     1172..1177,1184..1186,1226..1228,1232..1234,1238..1240,
                     1244..1249,1256..1261,1268..1270)
                     /gene="Zfp120l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1115..2113
                     /gene="Zfp120l2"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1127..1189
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1211..1273
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1295..1357
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1379..1441
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1394..1396,1400..1402,1406..1408,1412..1417,
                     1424..1429,1436..1438,1478..1480,1484..1486,1496..1501,
                     1508..1513,1520..1522,1562..1564,1568..1570,1574..1576,
                     1580..1585,1592..1597,1604..1606)
                     /gene="Zfp120l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1463..1525
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1547..1609
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1631..1693
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1715..1777
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1799..1861
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1883..1945
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1898..1900,1904..1906,1910..1912,1916..1921,
                     1928..1933,1940..1942,1982..1984,1988..1990,2000..2005,
                     2012..2017,2024..2026,2066..2068,2072..2074,2078..2080,
                     2084..2089,2096..2101,2108..2110)
                     /gene="Zfp120l2"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1967..2029
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2051..2113
                     /gene="Zfp120l2"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     exon            146..272
                     /gene="Zfp120l2"
                     /inference="alignment:Splign:2.1.0"
     exon            273..333
                     /gene="Zfp120l2"
                     /inference="alignment:Splign:2.1.0"
     exon            334..2483
                     /gene="Zfp120l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaagagaaggcgggcttttccgggtgccttggtgtagtattcgcttagtagttaagcagtcttaaatggtcctggctgctgtgttctgtgtcctgtgtttggattctgtgaggcatattcaggcaagctccgaagttgcgacatggatgcattgacctatgatgatgtacatgtgaacttcacccgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcagtgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaaggcatggaaggcatgaaagatgtcatactggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacgtagtcatctccaaagacataataggacacgtactggagagaaactctatgaaagtaagccacgtgataaagcctttacatacgattctcagcttcaaaatcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcattgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagccttttcacaaaacagtcatctccaaacacataatagtacacattctagagaggaactctataaatgtaagcaatgtggtaaatcctttacatgccgtaatgaacttcaaagtcataaaaggattcatactggagagaaatcctatgaatgcaatcagtgtggtaaagcctttaaatctcatctttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagagatcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtgatcaatgtggtaaagcctttgcatctcatcgttatctccaagtacataaaagaatacatactcgagagaagctctatgaatgtgatcaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgattggtgtggtaaagcctttgcatctcatagttatctgcaagtacataaaagaatacatactggagaaaatctccatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctgcaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataagagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggattggtaatctccgaacacataaagtactacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtagcactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttaccaatgtaatgaatgtggtaaagcctttgtatttgatgctagtctccgaaaacatagagcaatacatactggagtgaaaccttatgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaaaaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttattgtgatattcaaaggtatggtggttaaaatatacgtggcccatggcaagtggcattgttatgaggtatggcctttttggagtagatgtggcctttgaggaagtatgtcactgtgtgtgtgtgtgtgggcggggctttcagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttctaaga

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