LOCUS       NM_001195277           10116 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 178B (Tmem178b), mRNA.
ACCESSION   NM_001195277 XM_001053868 XM_002726348
VERSION     NM_001195277.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 10116)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Mar 29, 2024 this sequence version replaced NM_001195277.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments, including zebrafish
            NP_001002396.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1316252.1,
                                           SRR26643298.22665.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-422               JAXUCZ010000004.1  69626188-69626609
            423-536             JAXUCZ010000004.1  69746605-69746718
            537-674             JAXUCZ010000004.1  69955058-69955195
            675-10116           JAXUCZ010000004.1  69992959-70002400
FEATURES             Location/Qualifiers
     source          1..10116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q23"
     gene            1..10116
                     /gene="Tmem178b"
                     /note="transmembrane protein 178B"
                     /db_xref="GeneID:679651"
                     /db_xref="RGD:1585938"
     exon            1..422
                     /gene="Tmem178b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    23..25
                     /gene="Tmem178b"
                     /note="upstream in-frame stop codon"
     CDS             41..925
                     /gene="Tmem178b"
                     /codon_start=1
                     /product="transmembrane protein 178B"
                     /protein_id="NP_001182206.1"
                     /db_xref="GeneID:679651"
                     /db_xref="RGD:1585938"
                     /translation="

MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNNNNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALHLRRMTAGFMGMAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRYLYGLPDDISHGYGWSMFCAWGGLGLTLISGFFCTLAPSVQPVPRTNCPKSRPENGTVC"

     misc_feature    338..838
                     /gene="Tmem178b"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            423..536
                     /gene="Tmem178b"
                     /inference="alignment:Splign:2.1.0"
     exon            537..674
                     /gene="Tmem178b"
                     /inference="alignment:Splign:2.1.0"
     exon            675..10116
                     /gene="Tmem178b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcggcggatcatgcccatggtgtagccgccaagcggaggcatggctgccggaaggttactgctctataccgggctttcgctagcgctctgcgccctcggcatgctggctgtggccatctgctccgaccactggtacgagacggacgccaggaagcacagggacaggtgcaaggccttcaacacccgccgggtcgaccccggtttcatttacaacaacaacaacaacttgcctctgcgcgcgagccgttcgcgcctggaccgctgggagggcaaactcctccgggcccggaatcgccggcagctgttcgccatgagccccgcggatgagtgcagccggcaatacaactccaccaacatgggcctctggaggaagtgccaccggcagggcttcgacccggagatcgccgccctcatacggaaaggagagattgagagatgcacgtacatcaagtaccactactcctcagcgaccatccccaggaacctcacattcaacatcacgaagaccattcgccaggatgagtggcatgccctgcatctgcgtagaatgacagctggcttcatgggcatggcggtggccatcatcctctttggctggatcatcggtgtcctgggctgctgctgggaccgaggccttatgcagtatgtggctgggcttctcttcctcatgggaggaaccttctgcatcatttcactgtgcacctgtgtggctgggatcaactttgagctatcacgttacccacgctacctatacggactcccggatgacatcagccacggttatggatggtctatgttctgtgcatgggggggcctgggcctcacactaatctcgggattcttctgtaccttggccccctctgtccaacctgtcccgaggaccaactgccctaaatccagaccagagaatgggacagtgtgctaaaaaacaaagacaaaaaaacaaacccatacctatatatatatataaatatatatataatatacatatataaaatgaaacgcaatcaagatgatgccagtgccaaggtagagttgagttggctcaggcacctgcatctcaccagactttgtgttgcctcatgtccaagatggaaaaagtgtccccatcctgtggctctctcatccgtttttgactttggcttcatgatttcttcaagacagagtgaaggccaccacaggcatcttgatccttgtcactcgtacggatgtggtggtgagctggaagggacaaaggcagtggtctaaagcgacacagatacaaagaaggacgtgccacactctgggccaacaggagaggacaccaccaccaccccagccatcatatcatgggggaaactcagtcccttgagttcatagaatgtaaccacatctttgaggccattttcagatccacttctctgctcttcctgttctgagctccttcccaacccaccagcgacacagcacaagtggaagagaaaacagactgagaaggaagttttctctttgcggccaaacctttggacgatgctttagaggtgggaaggggagagaagatgctgagaggcaagatccacatcaactaaaggacatttcaatggatgctcagaaaacccagtcttaccttccagctgccttacacccagttaaacaagaggccaccctgtcctcccctgcctgcactctctgggcagattggagcctttgagtaatgctgtgatgtgtgcgtgtatgtatgtgtgtgggtgggtgggtgtgtgtgcacacacatgcatgtgtgcacatgcatataggtattgggtggttacctttttcttttccactctgtgaatggaactatcatattactctgttgtctctcttactactgttgtttttgacccattatagaggccccaagaaccgggaattatcttgaggggcaggccttcaggggtgccaatgcagcagctgcagatccctggagagagacaaaagtgtgtgtgtgagtgtgtgtgtgcgtgtgtgtgcatgtccacgcacgtgtgcatgcacacgtggtagatagttcgtgagtgtgggattttattgtttgtgttgcatattttttctattatttttggtacagctgaaattcccagagggcaaaccaagaacaaaactactgggccagagaaccctgtggtacctcacagtatggttctggaactccgcaagatttagtccactaagtttggaagttcaagacacagctgggcacaaaagtcctaagagaagagggggaaacatacagttcaggagagaaaaggaatattgcctctggttgctgatgtgcgagtacatataacaaacaagaccttcactccccactgtgggggctgtcctttgtcactggatgtctgctcctcttctaggggcaagccctgtacagaggagaggaaatgagtcacatgcagaaagagcacctccaagtcccatgggctcaagtttgtatgatattatgtaaatgaatggagaactcttgactctttccgttctcgtccctctcctcttgatcttcaaggccatgaatcccaaaatagcgatctatcttagaggctagcacccaaactgaggtgccatccaaacgggcaaggccgtccaggtatctcaggcttgcctgagcaaatttgcactgggtgctggcgagtgaagaagtcagccagagctgtgaatgccacagggcagaaacagctcatggttaccttggggaccctgctggtgccaagtgtccctggggaggcaaggagagaatcctgagctggcacaaccatggtcagccatgcagaaggggagctcagctgctgcagaacagatctgctttggaaactttgccaaccactcggcagccttccgcaactctgtgctctgtcacagctctctgtttccaacctctttccctcccagactcctcacctactaacagcttccctcccctctctccatctaccaggctgtaggtcctgttcttctcatctgctcttttgatcacccctcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtcatcgtgtatctatatacaggtacaggtgtggatgcatttctcaagaccccctcagaagggccctggtgagattctgcagcagagttagcatgtgagcacccagagcgtaggagaaccagatgatcaggggcaaactggtatcaggaaatgctgctggcttccaattgagtttatttttaatttatctatttacatcaaatgctgctccccctccttgtccccctcatagagatcttcccccattgagatttttaagtccattttaaagacaaagggtatattctatgataagggaaatcacttttaaaaaaaactcaatttttttttaattgacaggtttttttctttgaaaagctagatttttctcttaaggtgaaagatataccgaagtttgagggaataaatgaaagtctctcagattgagagatcttttgttctccttctagatatcttgagctgagcagggataagcaggaaggtatccatgaacacccacttggggtacttttctgtgactgaacgctaattccagctgccttccatttgcaaaaagacagaggaagctaagccaaatgggacattttgttagtcactatttaaactcttcttgaaaaaacttgcttgacatacttgttcacagacctctcatttatgcattatttttaaaaaaattcacactcatcttaaacagatcatctgctctatccaattgcccaacaccatgatgaactttcagtaaaactcactggcttcctttgaaacacaagcattcttgaaacattggatggactcccaggaaggagacagactttctgggctcaactcctcaactgagcatgagcagagcaggaccttagagtaactctttccctattacaactggacagggtcaggtacagatgtggattctgatcctacttagcaacagaacaagctcaggtacctaatcaggagagaagtctcctcactgctcgcagatagcaatctccgtccagggggtctgactcctctaccacaggggattgagcactggttaaaactagcccctctggtgtagtttctgggactttctggctgtgagatggctagggaatgcataaaggagaaggaggtgtcttgggttgtcacactctctaggtcagactccactaactccaaatcatagactccaaccttttgacaggagcctggttcctaccccagtcaagttccaatagctgtgtgtatacaaggtgtgtggttgcacaagctgtgggctctgtgcaaacctacagcgtgaggccactctcaacactcatttcttttgctctctcctagattggagatttgggaaagttgggacctaactggggcaaaatacaatttcctgttttcattggaggaattatggctcctcttctacctaccttctttctgcgactttccttatgatccattcttcgtgacagataactttgtagggactcaagacacttcaggcacctctccttctttgccacggcctgaggtctcacaggaggtatgtggatcatgaacataagaaaaaatatctgttctagctttagtcaccggacagcctttcagcagctcccctttctcacctctagggatcataaaagcatagttacagcatttccccagagccagataagtcttctttggcctcaggtccttcagtggtagcctgggcccagacactgtgctggtgtattctccctcacagggatttctacccaagcatgtcacctttcctcaataggaaagggtaccccgagactttgcatctccttagacatccatatacatgataagaggcctaattagaaaggaccagctatgtaatattcagaataataaggtccaactcattgctcagagcatttgatgtcaactgtcttcggctgggaacgtttattcactgatttttcaatcatgtaggggaagaaacagactcagacaccctctgtctttatgtggaatactggttgcttctcatcgttagagagaatcttctggaaaggtctctgctgcttctgacctgatatgccccagtgaacacatccatccctctccagggaaacatgatgagtcagaagacctggtttcatagagaatgacagtaagccttactgctatcttctagcccatacagaccgaggaagggggcagatttctttttaaagcaagaccaacagagaaggtgcatcccaatgattctggtgcctctcagggtgcttgacttctgggcttatgtttatcacctctccctccatgctgctaagccacaaaacatttcgttgacattggtcctagtccttagactaggttattaccagctagtgagctttcctccctgaggaatacatgctcattatagaaaaactaggggaaaatcatgcaaacgactgaaagacttgtcccttaccatggacccattcataagggtcagacctcagaaactcttcaatgagtgcttgtcactgggtaaatagatggggccagaatgacatacaaaccagaaaggcagcgaggagacatttgaaagctcacaccagagctatatagatccctctccttctctctcccactctctctctctctcccctacttctttttttttttcaggtgccatctcaatctaatcatgggtataaattcactgaggccagagaaactcactaattaagctacacttgtaaaatgtagcaatggctgaacatttcacttcactctgtactaaaacgatttgtgactctgggcactgtgtcttctccatacttgaacttcctcatctacaaaatgaggacagcgataacgctttacctcatggtatattaagggtgacaaataaattgcaaagcaatttgcaaacacgaagaagtgtctatgaatcatgtgctgttcaaattacccattatcggcagtgcagccacgacaatggaatggttccatcaaggctctgccaagaggctaatgtagagtgggagaggccatcttggttgctgaacttgagtgtagctatccaacagaagcacatgggattcacttctttcagccctccagagaaatggcctccttcatagtctttccccattgccagactcactttctttattccaaggccagtcttgcaaagttcacgctcatttcctgcgtgttaccagaagtaacgatatggagatatcatgtggaggacaagagtgtagatgactcatatagttcactttgaaagcaggcatggagttaaggctgtttgttttaacagttctgttatcattcctcgctgtacacactcatgttggggagcaaagtcagagtcttgaagcttctagagctctctcacatttagagtgaagataagtatggtaaaaggaagggcccacttcctcttgtcagctataaaactggtgacttcatcaatagcccctcagttctggtaggaggtcgtgagtgtcgtatcaagtcgggacacgcccctgtatgatcttgcttggatcctaaatttgaaaggagaaaatgattgatttccccaaaagaatttccatgcctttcttctttcctgtgtgcactgagatgttctacagagcaagtccttgctctctctatgactagagtgtagtcgataataagggtaatggcacacccacaagggtgggtcgttcacagccaacaaacagaaaactgggccccaacctatgagttgcccagttacacagctcaacctggcatctccctgacaaatgccaggatattattcctacctaaggcctgttatgactccctagggaaacaacccagtgtcctccattgctctcccttggaccccaaacttttcctttcttctctgggtggtccgtaggcccatttccatttgtatgtgccagtatgtctgtgtcgtgagtgtgatggtgcctttcacacagagatttcacagaaccactctcatgccctacccggcctgcccccccatccccacccccactgcccatggtgtgactgttttgctattcaagactctctgtaaaaaaatgtacaaataaaagtaaaagctgaaaattaaggggaggggaattgcatcttcttaaatgctgtaatgtagccctcggttttctgagggtctgtgaggactgccctagaatcctgactctgggggcacttgaagggagggaacgcctgtcacagatttttctggttgttttcctgatggtcgcttctgcttgcttggtattctctgttctgaagacttttgcctttaaagttaagtaggtctccccccacccccaaataaaagcatatcatccaagttagaatagtgaaggtcaaggccggtgtcaactccaagacatggcctggggtgatattagtgattttgttaatagctcacctggaaccttgggtgaatcttgtgacctcactgtgtatccatgtcctctcagcctcacaggaagcagggtgacattggggacacatgtaacacccagtctccctgtccattctgctgctatttgtgcccatgctggctgccgtatgctgactgagctgaggcagttcaggagaagctctctccctgttgctctggccctaagctgactcgcctcagaaagtaacctcaagccagcagccagtttgagtgcagagtccaaagcctttgatctaccttttcagtctcagatgccttttcccacccactttgatgatctcatcttgctctctgctgacagagctttgcctcacaggactggggtaggagaaagaccatcaaaggtgatggtgtgagtgaatcgctttaccaactgtggctggctcaacgaatgtggcttactgcataaagaagctcaggctgcccaggggacgctataaaatggggaggggaaaaaagaaggtggttctggggatggggtggaggttgtgggtagaagatgtggttagataaacttagaggttaatgaagaaatgtttgtgcttccaaaagcccctcagaaacatccccaaggcagtaaccctggcaggatccaggacatggataatcctggagtacaagaggctgctagggaggagtggttgcccaagagagatacacaaatttggcctgtgctagcacccttacactcatggttacaggcccttcagtctaacacttcctcattcctaatggagcttggtgaccctccttgagaattgtataaggaaggacttagaccaccgctgtccaataaaatttgatacaagttgtgtatgaaatttgaattattctactacctgggtttaaaagcaccaacaaaacaggtgatattaatttcaatgctatatttgaacccagtagatcaaaagatattagcacttcaatgtggaaccagtgtaaaagtcactggcatgttttatgttctgtctatttcaagtaaaatcttctaaacccaaggtgacttttaccctgagaaaacctctccaactggatcagccacaccttgagtgctcaaaagctgcaccaggcttttgtgaccatctaggagaacagacttaagtcttttcagagcctgagcagggtgcccattgccagtgagtcacacactgtggtggatttccttgtgggaacaaagacaaaggctggatttgctgaatagaagctgagctatgaccatgatgctggctcacttttagaagctctactttacctgtgtagtaaggggagagagtcactgctgtgaaccaaccacatgttatgcctgcctcaagagctatcagtgctctccttggacatggccctgatgatctaagtcctaggaagaaagcaggccatggcctttggctgcaggagagtcagccgcggcccaccctatccatgtagatgtcttatatctcatgataagggatagacagacctccctgttgctaagaataaacacctctcccatcttttaatatctggtggagtctcctgctaaaagcatctcactgatatttggagctgtttgattcatcctctaattgctttaattttttttttaaatcttgagtattgaaaaggggatatgggaaaagaatagcaggcagaccgggtctcctatgaggtagcagagacaagtcctatccttagactaggactaagaccaccatttcctacctctcctttctgcttagagatcttccttagatctaaataagcctcttctctgtgtgtgagaaagacaggtagtgagatcttagggcatagaacagaataaatataagcaaccggccccaccaatcatgtcaaagatccagtatgataaggcttgattcacttaaaatataatattctgagccctatgctgtcaaacaggagaaagggagctggtgagtacatcgagtatgtggtcattagaaagggaccagggcctacaaaacgctcaaacacctggcgtgttgagggtctgccagattattgctcagtcaatataaatttatttaccttcactctaatttgcatagtgctttctgattgattagatacagtgtggtgtataccgcaggattctaacaagactctctcctcttggaggtagcaattcctgtggttattggtgctaaaataagattaaatattatgttaatttgttctaatacaatttgaataaatgtattgtttaatcttaacaagaatgctacatcttatcagatctattgtactgtctgtttcttctcataattaattaattacaggaaaggtgatccaaaccagatctcgaaactcttgtgatactctgagaggaacttaccagggaagtgggagggggaatgaaaagggaaattgccaggttcctgtgactttgaaaggaccgaggaagcagagagcgagcatttggggacttcactgaaactgactgcatcttgcaattttctttttcgaattggcagaaatattgttatttccatcgattgaagaaaaaaagtgtctggtaattaattaaatgacttgttcatggaaaacaataaaaataaataatctgtcagttgtggaatgtaaactgattaaacaattaaataaagaagaccatgttgtgtgttttaaaagcc

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