LOCUS       NM_001109415            1088 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus claudin 34E (Cldn34e), mRNA.
ACCESSION   NM_001109415 XM_001057406 XM_006256958
VERSION     NM_001109415.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Aug 30, 2022 this sequence version replaced
            XM_006256958.4, NM_001109415.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32576.1,
                                           SRR26360181.72218.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               JAXUCZ010000021.1  45627195-45627344   c
            151-214             JAXUCZ010000021.1  45623905-45623968   c
            215-1088            JAXUCZ010000021.1  45620496-45621369   c
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq21"
     gene            1..1088
                     /gene="Cldn34e"
                     /note="claudin 34E"
                     /db_xref="GeneID:680489"
                     /db_xref="RGD:1591711"
     exon            1..150
                     /gene="Cldn34e"
                     /inference="alignment:Splign:2.1.0"
     exon            151..214
                     /gene="Cldn34e"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    183..185
                     /gene="Cldn34e"
                     /note="upstream in-frame stop codon"
     exon            215..1088
                     /gene="Cldn34e"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..875
                     /gene="Cldn34e"
                     /codon_start=1
                     /product="uncharacterized protein LOC680489"
                     /protein_id="NP_001102885.1"
                     /db_xref="GeneID:680489"
                     /db_xref="RGD:1591711"
                     /translation="

MLLLSKSANCQVGGFALASIAWVLCSISTGLPQWRVWYLNETMFTKPTTAFVGIWRVCIYHENSKPGSVRVCHEYTYHDSFIPLDVRIIQHLLLISNMLGLIGTVTTIFALRNVYTEKVQKNDTYNPFIISAILNIIASISILLAVLFNYFSVIHKAGIAFPPSFHMPLYPSDQRIGIANVVASLCALMFLGSGIILISYTSPTEKQVFPEI"

ORIGIN      

tccagtaatatgccaagtgctcacaggtgactgtgaagccagacccaaggcttgaaggacacgtgaggggagctgtgttctcatctgaccctctgctacattgttctaccacattgccgatcactgattcacttgaagaaaacatatcaggttatcatcctggttcctaattgtcctctgtttgacatgtgataagtgaagaagcttgctttagttgtctcgtgtttgctgtcaccatgttgttactcagcaaaagtgccaactgccaagtcggaggttttgctttggcatccatagcatgggttctctgcagcatctccacaggtcttccacagtggcgagtctggtatttaaatgaaacaatgttcaccaagcctaccacagcctttgtaggaatatggagagtctgcatttaccacgaaaacagcaaacctggcagtgtcagagtgtgccatgaatacacctaccatgacagctttatccctttggatgttcgtatcattcaacacttattactgatctccaacatgctcgggttgattggaacagtcaccaccatttttgctcttcgaaatgtgtatacagagaaagtacagaagaatgacacttacaatccattcatcatttcagcaattctcaacatcattgccagtatctctatcctccttgctgtcttattcaattacttctctgtcattcacaaagcaggaattgccttcccaccatctttccatatgccgttatacccatctgatcagagaattggaattgctaatgtagtggcaagtctatgtgctctcatgtttttaggcagtggcattattttaatttcttacacttctcccacggaaaagcaagtgtttcctgagatttgaaaatacatttacagctaacatcactgtgaaacccccaggagttatagcatgtattttgaagacgtttacataaattttccaaggactcaaaaccacattccaagaacctatgaccaaagatggccaagatggccttctcttttctgtctactttgtttcattatcttatttgttggcttctaaacttttactaaataaaatcttattcatgca

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