GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-23 07:07:38, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Oryza sativa Japonica Group disease resistance protein PIK6-NP-like (LOC107281440), mRNA. (4204 bp)
of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107281440" CDS 135..434 /gene="LOC107281440" /codon_start=1 /product="disease resistance protein PIK6-NP-like" /protein_id="XP_015643813.1" /db_xref="GeneID:107281440" /translation="MAETVLSMARSLVGSAISKAASAAANETSLLLGVEKDIWYIKDELKTMQAFLRAAEVMKKKDELLKVWAEQIRDLSYDIEDSLMNLKSILKAKPYFVSW" misc_feature 210..>383 /gene="LOC107281440" /note="Coiled-coil domain of the potato virux X resistance protein and similar proteins; Region: RX-CC_like; cd14798" /db_xref="CDD:271353" polyA_site 4204 /gene="LOC107281440" /experiment="COORDINATES...
AA_position 42
XM_015788327.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group disease resistance protein PIK6-NP-like (LOC107281202), mRNA. (518 bp)
relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: disease resistance protein PIK6-NP-like" /protein_id="XP_015642059.2" /db_xref="GeneID:107281202" /translation="MAETVLSMARSLVGSAISKATSAAAHEASLLLGVQKDIWYIKDELKTMQAFLRAAEVMKKKDELLKVWAEQIRDLSYDIEDALTNSRSILRAKICFIRW" misc_feature 134..>349 /gene="LOC107281202" /note="Rx N-terminal domain; Region: Rx_N; pfam18052" /db_xref="CDD:436239" ORIGIN //...
AA_position 42
XM_015786573.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group MADS-box transcription factor 30-like (LOC4341786), transcript variant 1, mRNA. (1272 bp)
LOC_Os06g45650" /codon_start=1 /product="MADS-box transcription factor 30" /protein_id="NP_001408621.1" /db_xref="GeneID:4341786" /translation="MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMVTKILLLNVITIMILAAMISITHARIALDDCMQLGYIVIKQENSWRFWFI" misc_feature 224..436 /gene="LOC4341786" /gene_synonym="MADS30; OsMADS30" /note="MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS...
AA_position 143
Synonym: MADS30; OsMADS30
NM_001421692.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4340777), mRNA. (1111 bp)
to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: putative disease resistance RPP13-like protein 3" /protein_id="XP_015643907.2" /db_xref="GeneID:4340777" /translation="MAAETVVSMAMSVLGSAVGKAASAAADEATLLLGIQKEIWYIKDELKTIQAFLRAAEVTKKKDDLLKVWAEQVRDLSYNIEDCLDEFKVHVESQSLAKQLMKLGERHRIAVQIRNLKSRIEEVSNRNTRYSLIKPISSITTEDERDSYLEDARNQSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDXMDHRCMELDS" misc_feature 167..454 /gene="LOC4340777" /note...
AA_position 43
XM_015788421.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group dehydration-responsive element-binding protein 2A-like (LOC4324418), mRNA. (1428 bp)
product="dehydration-responsive element-binding protein 2A" /protein_id="NP_001415037.1" /db_xref="GeneID:4324418" /translation="MERGEGRRGDCSVQVRKKRTRRKSDGPDSIAETIKWWKEQNQKLQEENSSRKAPAKGSKKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNFADNSTDANSGCTSAPSLMMSNGPATIPSDEKDELESPPFIVANGPAVLYQPDKKDVLERVVPEVQDVKTEGSNGLKRVCQERKNMEVCESEGIVLHKEVNISYDYFNVHEVVEMIIVELSADQKTEVHEEYQEGDDGFSLFSY" misc_feature 400..624 /gene="LOC4324418" /gene_synonym="DREB2A; ERF40; OsDREB2A; OsJ_000494" /note="propagated from UniProtKB/Swiss-Prot (Q0JQF7.1); Region: Disordered. /evidence=ECO:0000256|SAM:...
AA_position 162
Synonym: DREB2A; ERF40; OsDREB2A; OsJ_000494
NM_001428108.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4346387), mRNA. (640 bp)
misc_feature 1 /gene="LOC4346387" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 131..358 /gene="LOC4346387" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_015612568.1" /db_xref="GeneID:4346387" /translation="MSSTNTTSNDPKTTKDELAPPAPTAAEHGGGKDAVTKTVQTVEVKESVGQEPVLKPTKVVHQIPADQAKDAPKQD" polyA_site 640 /gene="LOC4346387" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 15
XM_015757082.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group monodehydroascorbate reductase (NADH) (LOC4330468), mRNA. (1918 bp)
reductase 1, peroxisomal-like; monodehydroascorbate reductase 1(NADH)" /codon_start=1 /product="monodehydroascorbate reductase (NADH) 1, peroxisomal" /protein_id="NP_001404045.1" /db_xref="GeneID:4330468" /translation="MGRAFEYVILGGGVAAGYAALEFVRRNGGASSQELCIISDEHFAPYERPALSKGYLLPQDAPRLPAFHTCVGSKDELLTEEWYNEHGIVLVLGTRVISADVRQKTLLTSSGETISYKTLIVATGARAVKLEEFGVSGSDARNVCYLRNVEDADKLVGVMRSCPGGNAVVVGGGYIGMECAAALVTNNIKVTMVFPKKHCMGRLFTPKIAEFYESYYASRGVTFVKEAAVTSMQISAGKVTAVNLGNGRRLPADMVVVGVGARANTGLFDGQLVMENGGIKVNGRMQASDASVYAVGDVAAFPVKLFGGDVRRLEHVDCARRTARHAVAAMLEGTGSVGHIDYLPFFYSRVFSLSWQFYGDNAGEAVHFGDLAPPGDGDGAA...
AA_position 74
Synonym: 49D11.20b; MDAR1; MDHAR1; OsJ_35955; OsMDAR1; OsMDHAR1
NM_001417116.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group thioredoxin H-type (LOC4339267), mRNA. (714 bp)
note="transcription start site" CDS 146..511 /gene="LOC4339267" /codon_start=1 /product="thioredoxin H-type" /protein_id="XP_015640796.1" /db_xref="GeneID:4339267" /translation="MAAASAAAQAEGTVIAIHSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKDELASKLELHMAM" misc_feature 221..493 /gene="LOC4339267" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...
AA_position 108
XM_015785310.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9270848), transcript variant X6, mRNA. (1773 bp)
LOC9270848" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 1224..1589 /gene="LOC9270848" /codon_start=1 /product="uncharacterized protein isoform X5" /protein_id="XP_066167764.1" /db_xref="GeneID:9270848" /translation="MNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRWDAAHARAFKLQENNDAYMLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNDGGSEGKVILV" ORIGIN //...
AA_position 35
XM_066311667.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group sm-like protein LSM1B (LOC4335963), mRNA. (872 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 225..614 /gene="LOC4335963" /codon_start=1 /product="sm-like protein LSM1B" /protein_id="XP_015633580.1" /db_xref="GeneID:4335963" /translation="MSSWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGSMRKRMEFLDFD" misc_feature 261..473 /gene="LOC4335963" /note="Like-Sm protein 1; Region: LSm1; cd01728" /db_xref="CDD:212475" misc_feature order(270..272,279..284,297..299,303..311,318..320, 324..326,339..350,357..362,366..368,429..467) /gene="LOC4335963" /note="putative...
AA_position 87
XM_015778094.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9270848), transcript variant X5, mRNA. (1800 bp)
LOC9270848" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 1224..1616 /gene="LOC9270848" /codon_start=1 /product="uncharacterized protein isoform X4" /protein_id="XP_066167762.1" /db_xref="GeneID:9270848" /translation="MNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRWDAAHARAFKLQENNDAYMLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGFRLFTEAKDGGSEGKVILV" ORIGIN //...
AA_position 35
XM_066311665.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9270848), transcript variant X4, mRNA. (1804 bp)
LOC9270848" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 1224..1616 /gene="LOC9270848" /codon_start=1 /product="uncharacterized protein isoform X4" /protein_id="XP_066167758.1" /db_xref="GeneID:9270848" /translation="MNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRWDAAHARAFKLQENNDAYMLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGFRLFTEAKDGGSEGKVILV" ORIGIN //...
AA_position 35
XM_066311661.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group thioredoxin H2-2-like (LOC4334453), mRNA. (775 bp)
OsTrx10; OsTrxh2-2" /note="LOC_Os03g58630; OSJNBa0052F07.8" /codon_start=1 /product="thioredoxin H2-2" /protein_id="NP_001405766.1" /db_xref="GeneID:4334453" /translation="MGSFFSTMFTPPPAADDGGDSRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAVFFKIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFI" misc_feature 108..167 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="propagated from UniProtKB/Swiss-Prot (Q851R5.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 237..485 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="...
AA_position 118
Synonym: OsJ_12982; OsTrx10; OsTrxh2-2
NM_001418837.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group thioredoxin H2-1-like (LOC4342618), mRNA. (1329 bp)
note="OSJNBb0003E08.27; putative thioredoxin; LOC_Os07g09310" /codon_start=1 /product="thioredoxin H2-1" /protein_id="NP_001408957.1" /db_xref="GeneID:4342618" /translation="MGGAFSTSKPKPAAGEEGGESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVAFLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTINTLRTATTT" misc_feature 651..710 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="propagated from UniProtKB/Swiss-Prot (Q6Z4I3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 756..1025 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /...
AA_position 117
Synonym: OsJ_23401; OsTrx24; OsTrxh2-1
NM_001422028.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9270848), transcript variant X3, mRNA. (2038 bp)
LOC9270848" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 1224..1643 /gene="LOC9270848" /codon_start=1 /product="uncharacterized protein isoform X3" /protein_id="XP_066167754.1" /db_xref="GeneID:9270848" /translation="MNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGKRWWFRGEGNSCMKQRLHILLMTILARSVLPWVPWSLIICLILSMLV" polyA_site 2038 /gene="LOC9270848" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 35
XM_066311657.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9270848), transcript variant X2, mRNA. (1789 bp)
LOC9270848" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 1224..1646 /gene="LOC9270848" /codon_start=1 /product="uncharacterized protein isoform X2" /protein_id="XP_066167752.1" /db_xref="GeneID:9270848" /translation="MNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRWDAAHARAFKLQENNDAYMLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGKRWWFRGEGNSCMKQRLHILLMTILASYS" ORIGIN //...
AA_position 35
XM_066311655.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4324432), mRNA. (2984 bp)
COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 38..508 /gene="LOC4324432" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_025876550.1" /db_xref="GeneID:4324432" /translation="MRRDAAAVPTAAVASPPISVEAVVIDVEGDPAVPAGAACRICHLVPEGGVGPGSEVIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTTTQRESTCWRTQPFCNFLLACLLIAFMLPWFLRVNMF" misc_feature 146..>505 /gene="LOC4324432" /note="E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]; Region: SSM4; COG5183" /db_xref="CDD:227510" misc_feature 152..310 /...
AA_position 64
XM_026020765.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9270848), transcript variant X1, mRNA. (1849 bp)
LOC9270848" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 1224..1700 /gene="LOC9270848" /codon_start=1 /product="uncharacterized protein isoform X1" /protein_id="XP_066167751.1" /db_xref="GeneID:9270848" /translation="MNFGADTSRELGARSSEKAARWIRTMESALKPPRKDELVSCSHTRWQAFRWDAAHARAFKLQENNDAYMLSRCSNRMHSIGWTVFSSVHNDPMASDVIAPSPWTIFDCKNGKRWWFRGEGNSCMKQRLHILLMTILARSVLPWVPWSLIICLILSMLV" ORIGIN //...
AA_position 35
XM_066311654.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group heptahelical transmembrane protein ADIPOR3-like (LOC4332161), mRNA. (2110 bp)
protein ADIPOR3" /codon_start=1 /product="heptahelical transmembrane protein ADIPOR3" /protein_id="NP_001404370.1" /db_xref="GeneID:4332161" /translation="MAAAAGEEVEAARWAEAEDERKEGLYGLVEYRALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVPNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPSLSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKWRDVQGC" misc_feature 753..815 /gene="LOC4332161" /...
AA_position 142
Synonym: ADIPOR3; OJ1175C11.13
NM_001417441.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC136351087), mRNA. (1032 bp)
samples with support for all annotated introns" /db_xref="GeneID:136351087" CDS 365..847 /gene="LOC136351087" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066162738.1" /db_xref="GeneID:136351087" /translation="MSLEPASPSADSGVTSLTSTANNVAVVVRGGDSDDSDDSDSSDGVGYDSDDLMDDMMDDIFEQFIEKDELLDRIGARLVAPLLPAATRAQRRQVLEQREQARAAREELRRGVARSRELTRKIRRLKRMANADVSGYPAARREAHERETRRLAREIFGSDA" ORIGIN //...
AA_position 67
XM_066306641.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group auxin-binding protein 4 (LOC107277066), mRNA. (694 bp)
LOC107277066" /codon_start=1 /product="auxin-binding protein 4" /protein_id="XP_025877817.1" /db_xref="GeneID:107277066" /translation="MCHQSWLERVLTVSGVCSDNSVVKDIRQMPQGTLAHGMKEVEVCLQTFGPGQRTPIHRHSCEEVFVVLKGKGTLFLGSSSMKYPGQPQEIPVFQNSTFTIPVNDPHQVWNSDEHEDLQVIVVISRPPIKVFFYDDWNMPHTAAKLQFPIFWDEECLIAPKDEL" misc_feature 224..631 /gene="LOC107277066" /note="auxin-binding protein 1, cupin domain; Region: cupin_ABP1; cd02220" /db_xref="CDD:380349" misc_feature order(227..241,275..286,290..292,347..349,353..355, 359..361,383..385,389..391,431..433,437..442,446..460, 521..523,527..529,533..538) /gene="...
AA_position 160
XM_026022032.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4346979), mRNA. (796 bp)
" /note="transcription start site" CDS 18..512 /gene="LOC4346979" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_015610774.1" /db_xref="GeneID:4346979" /translation="MASSSLLRSAGGALRRWIPRRLFPSTSYRVWFGRRQSGYEQAFAESPRRRHLGSDCGGSTDDNQKRYSMDELLKCKRQLEKNKEGAFRPADIPDHESKKDELYRKMRSTFDKLCHCLDEQEHILREIEDQVDNDEKFDQVKQYLVAIPSFVCIGLILDRMHMFG" polyA_site 796 /gene="LOC4346979" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 99
XM_015755288.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group uncharacterized LOC4343647 (LOC4343647), transcript variant 1, mRNA. (711 bp)
is encoded by transcript variant 1; Os07g0568900" /codon_start=1 /product="uncharacterized LOC4343647 isoform 1" /protein_id="NP_001390049.1" /db_xref="GeneID:4343647" /translation="MHLRFVPFPAIAVGGASLRFLADNTRAVGGSGRRRCSDVVAFSSSEKGPGPGSGEEREPRAEEALRRLAELDSQLEGLSEPRERPPAPPLPPDPYMDRDMITGRGSKDELPEFSPTYVTFSTLALVILTIFTNVVFNLYIKPSVDGVDQPVRIERVPMVNPADQQFK" exon 309..711 /gene="LOC4343647" /gene_synonym="OJ1019_E02.7" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 711) AUTHORS Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA,...
AA_position 107
Synonym: OJ1019_E02.7
NM_001403120.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC136351494), mRNA. (803 bp)
reads" /db_xref="GeneID:136351494" CDS 87..620 /gene="LOC136351494" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066159762.1" /db_xref="GeneID:136351494" /translation="MASAISRAAARLPLLRLSSQALLPTQIARFRSEFVQPNKPTADGIKLAQAVCDTEMNLASILLVQKSLDEKLAQHKLLSNVSLFEDKEVSQRSEEHSKQLTVQDIQMKKDELLSDIRRVEILEGTLRSLQKTRFQSQDNNICAQRLKGSEDGFTLCYSPLDFVSSAGFFYVM" polyA_site 803 /gene="LOC136351494" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 109
XM_066303665.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein LOWER TEMPERATURE 1 (LOC4352144), mRNA. (866 bp)
LOC4352144" /codon_start=1 /product="protein LOWER TEMPERATURE 1" /protein_id="XP_015618673.1" /db_xref="GeneID:4352144" /translation="MGADRKSSSPAGKPAEAARAGSLLAGLPSRGNFVADSIASSMGGLPVYVCLHDTAPPEGQVIDTDTTNILIRSLQLSKQKNEAKDVGSRTPGESSKGKRSASRLLDGKNPSKRANTGSTAGSSAHGELGSVFSEQTLQSFTVEKLRILLKERGLSPKGKKDELIARLIESSE" misc_feature 264..440 /gene="LOC4352144" /note="Det1 complexing ubiquitin ligase; Region: DDA1; pfam10172" /db_xref="CDD:401980" misc_feature 390..>716 /gene="LOC4352144" /note="poly [ADP-ribose] polymerase; Provisional; Region: PLN03124" /db_xref="CDD:215591" misc_feature 609..707 /gene="...
AA_position 166
XM_015763187.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4330520), mRNA. (1032 bp)
misc_feature 1 /gene="LOC4330520" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 127..678 /gene="LOC4330520" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_015626789.1" /db_xref="GeneID:4330520" /translation="MATILENIQKARFLPTRPLKDELPTFQKESHLMGLRKRLSSFSDKIQPISSASAEWAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFATDLEMNEEEVAALGRGSRGSWGHILYKMRSGVRRLVTSHSLPTTHRSASAQCKPAATFNYTQSFHSGQTAMAY" polyA_site 1032 /gene="LOC4330520" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 20
XM_015771303.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group ADP-ribosylation factor-like protein 5 (LOC4350802), mRNA. (1047 bp)
CDS 220..774 /gene="LOC4350802" /note="Os11g0586900" /codon_start=1 /product="ADP-ribosylation factor-like protein 5" /protein_id="NP_001412609.1" /db_xref="GeneID:4350802" /translation="MGAWMSRVWFLMFPAKEYKIVVVGLDNAGKTTTLYKLHLGEAVTAAPTIGSNVEEVVFKNIRFEVWDLGGQESLRTSWATYYRGTHAVIVVIDSTDRARINIIKDELFRLLQHGDLEGAVVLVFANKQDLKDAMSPAEITDALSLHSIKNHDWHIQASCAITGEGLYDGLGWIAQKVAGKATTS" misc_feature 232..747 /gene="LOC4350802" /note="Arf-like 5 (Arl5) and 8 (Arl8) GTPases; Region: Arl5_Arl8; cd04153" /db_xref="CDD:133353" misc_feature 289..312 /gene="LOC4350802" /note="G1 box; other site" /db_xref="CDD...
AA_position 104
NM_001425680.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4334723), mRNA. (935 bp)
note="transcription start site" CDS 187..741 /gene="LOC4334723" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_015628199.1" /db_xref="GeneID:4334723" /translation="MAALRYAARKICGRALQRPRVVYPAVTSPALEAERRLLPMLIRGEMPHISYTRHFSSSATPQPPLANNNKSISGHRLPCPNPAADAKVHNNIDPASLETLVQEKKDELFRLLLQMDLHNGSCEKSAEENKAILRLLRQFRAETRDNGTLSGADTKNLANRYVLPVSIILSGIIIVAQGHFISHL" polyA_site 935 /gene="LOC4334723" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 105
XM_015772713.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group psbQ-like protein 3, chloroplastic (LOC4336434), mRNA. (914 bp)
codon_start=1 /product="psbQ-like protein 3, chloroplastic" /protein_id="XP_015636182.1" /db_xref="GeneID:4336434" /translation="MALQLAAQALSAILLSGAQPSSRRATPPGNGQRSRRPPATGRRRLAASLLASQLLLLPAAATSVAGAFEFDLRITVPEQSGEEAEAVVKLHARNLVRVKGLIDARSWRELQAALRSSAANLKQDLYAIIQASPASRRPELRRLYSDLFNSVTSLDYAARDKDELRVQEYYSNMITSLDEIFSKIM" misc_feature 138..689 /gene="LOC4336434" /note="PSII-Q subunit; Region: PLN02956" /db_xref="CDD:215515" polyA_site 914 /gene="LOC4336434" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 161
XM_015780696.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group 60S ribosomal protein L9-like (LOC4347422), mRNA. (995 bp)
ribosomal protein L9" /codon_start=1 /product="large ribosomal subunit protein uL6" /protein_id="NP_001390775.1" /db_xref="GeneID:4347422" /translation="MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITEDA" misc_feature 115..684 /gene="LOC4347422" /gene_synonym="OsJ_29817; RPL9; YK426" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" exon 478..600 /gene="LOC4347422" /gene_synonym="OsJ_29817; RPL9; YK426" /inference="...
AA_position 140
Synonym: OsJ_29817; RPL9; YK426
NM_001403846.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group large ribosomal subunit protein uL6-like (LOC4327999), mRNA. (915 bp)
gene="LOC4327999" /codon_start=1 /product="large ribosomal subunit protein uL6-like" /protein_id="XP_015625200.1" /db_xref="GeneID:4327999" /translation="MKTILASETMEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITEDQ" misc_feature 56..631 /gene="LOC4327999" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" polyA_site 915 /gene="LOC4327999" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 142
XM_015769714.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group IAA-amino acid hydrolase ILR1-like 8 (LOC4342839), mRNA. (1636 bp)
codon_start=1 /product="iAA-amino acid hydrolase ILR1-like 8" /protein_id="NP_001409004.1" /db_xref="GeneID:4342839" /translation="MLTSMAPPNASARLLLLVVVLFAHLPTTTTAASPALKALGEDLLAAAGAAGFAGWLSGLRRRIHQRPELAFQEVRTSELVRAELDAIGVPYAWPVARTGVVATIDGGAGAGPVVALRADMDALPLQELVDWEFKSQEKGKMHACGHDAHVTMLLGAAKLLQSRKDELKGTIKLVFQPAEEGHAGAYHVLESGLLDDVSVIFGLHVIPNLPVGVVASRPGPFMSAAARFAATFTGKGGHAGVPHDAVDPVVAVSSAVLSLQQLVSRETDPLEAAVVSITILKGGDAYNVIPESASLGGTFRSMTDEGLAYLMKRIREIIEAQAGVNRCAAAVDFLEEELRPYPATVNDDGMYGHAKAVAEAMLGEANVRVAARSMGGEDFAFYARRSPGAFFFIGVGNETTMGPAAAVRPVHSPHFVLDERALPVGAALHAAVAIEYLNKHDCS" misc_feature 260..1405 /...
AA_position 169
Synonym: ILL8
NM_001422075.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group probable xyloglucan 6-xylosyltransferase 1 (LOC4332564), mRNA. (2145 bp)
PFVNDVKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFWAKLPLLRALLLAHPEIEFLWWMDSDAMFSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWGILVDRYEEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQILQMYGFTHKSLGSRKVKRIRNETSNPLDVKDELGLLHPAFKAMKTTST" sig_peptide 501..629 /gene="LOC4332564" /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 510..1823 /gene="LOC4332564" /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1" /note="xyloglucan 6-xylosyltransferase;...
AA_position 430
Synonym: OsJ_27597; OsXXT1; SRH2; XXT1
NM_001417595.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group auxin-binding protein 4 (LOC4352396), mRNA. (925 bp)
auxin-binding protein 4" /protein_id="XP_015620272.1" /db_xref="GeneID:4352396" /translation="METRTGPTAAGGHGAHLAGAGRGALLLALVVVSAAAFLPVAESSCPRDNSLVKDVSKMYQSNYGREGFSHITIAGALAHGMKEVEVWLQTFGPGQRTPIHRHSCEEVFVVLKGKGTLLLGSSSMKYPGQPQEIPVFQNSTFSVPVNDPHQVWNSDEHEDLQVLVIISRPPVKIFTYDDWSVPHTAAKLKFPYFWDEDCLPAPKDEL" misc_feature 188..640 /gene="LOC4352396" /note="auxin-binding protein 1, cupin domain; Region: cupin_ABP1; cd02220" /db_xref="CDD:380349" misc_feature order(191..205,257..259,281..292,296..298,353..355, 359..361,365..367,389..391,395..397,437..439,443..448, 452..466,527..529,533..535,539..544) /...
AA_position 203
XM_015764786.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group probable monogalactosyldiacylglycerol synthase 2, chloroplastic (LOC4345212), mRNA; nuclear gene for chloroplast product. (1946 bp)
xref="GeneID:4345212" /translation="MVISVATPRRSIRDAVLGGVLGAGGRQLYQPLRCAFYDGAAGGGLTAALSEDGAEGGVPLPCGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDMERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLWVLKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYGLPIRPSFCRAVLDKDELRKELDMDPDLPAVLLMGGGEGMGPVEETARALSDELYDPVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNALKLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFSYSI" transit_peptide 119..244 /gene="LOC4345212" /gene_synonym="MGD2; OsJ_025729; OsMGD2" /note="...
AA_position 262
Synonym: MGD2; OsJ_025729; OsMGD2
NM_001417276.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4339869), mRNA. (1403 bp)
misc_feature 1 /gene="LOC4339869" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 403..1050 /gene="LOC4339869" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_015640973.1" /db_xref="GeneID:4339869" /translation="MDKAGGNQGGKVLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKREEQQRLDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVDAYPSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTDCEAPLYQEALAQSDIHPGPIAIVSPLQKRREDPFTIQGEAVAAASSATESESGQWNQQ" misc_feature 669 /gene="LOC4339869" /note="Uncharacterized conserved protein, contains a C-terminal ATPase...
AA_position 22
XM_015785487.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC136357035), mRNA. (666 bp)
includes similarity to: 2 Proteins" /db_xref="GeneID:136357035" CDS 1..666 /gene="LOC136357035" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066167855.1" /db_xref="GeneID:136357035" /translation="MNRAEGQPITWAEFTEAFKKTHIPAGVVALKKREFRALKQKGRTVTEYLYEFNRLARYAPEDVRTDEERQEKFLEGLKDELSVMLISHDYEDFQELVDKAIRLEDKKNRMDNRQEQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNCYEPGHFVKECPKPKRQQPQGQVNNIVLTGANAVPVASQGIQLSHQFQSSSSFL" misc_feature 537 /gene="LOC136357035" /note="Arginine methyltransferase-interacting protein, contains RING Zn-finger...
AA_position 78
XM_066311758.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC136357034), mRNA. (666 bp)
includes similarity to: 2 Proteins" /db_xref="GeneID:136357034" CDS 1..666 /gene="LOC136357034" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066167854.1" /db_xref="GeneID:136357034" /translation="MNRAEGQPITWAEFTEAFKKTHIPAGVVALKKREFRALKQKGRTVTEYLYEFNRLARYAPEDVRTDEERQEKFLEGLKDELSVMLISHDYEDFQELVDKAIRLEDKKNRMDNRQEQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNCYEPGHFVKECPKPKRQQPQGQVNNIVLTGANAVPVASQGIQLSHQFQSSSSFL" misc_feature 537 /gene="LOC136357034" /note="Arginine methyltransferase-interacting protein, contains RING Zn-finger...
AA_position 78
XM_066311757.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable plastid-lipid-associated protein 11, chloroplastic (LOC4336599), transcript variant X6, mRNA. (1739 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 34..699 /gene="LOC4336599" /codon_start=1 /product="probable plastid-lipid-associated protein 11, chloroplastic" /protein_id="XP_066165335.1" /db_xref="GeneID:4336599" /translation="MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG" misc_feature 172..669 /gene="LOC4336599" /note="Region: PAP_fibrillin; pfam04755" /db_xref="CDD:309752" polyA_site 1739 /gene="...
AA_position 47
XM_066309238.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable plastid-lipid-associated protein 11, chloroplastic (LOC4336599), transcript variant X5, mRNA. (2346 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 34..699 /gene="LOC4336599" /codon_start=1 /product="probable plastid-lipid-associated protein 11, chloroplastic" /protein_id="XP_015633745.1" /db_xref="GeneID:4336599" /translation="MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG" misc_feature 172..669 /gene="LOC4336599" /note="Region: PAP_fibrillin; pfam04755" /db_xref="CDD:309752" polyA_site 2346 /gene="...
AA_position 47
XM_015778259.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable plastid-lipid-associated protein 11, chloroplastic (LOC4336599), transcript variant X4, mRNA. (1794 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 34..699 /gene="LOC4336599" /codon_start=1 /product="probable plastid-lipid-associated protein 11, chloroplastic" /protein_id="XP_066165334.1" /db_xref="GeneID:4336599" /translation="MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG" misc_feature 172..669 /gene="LOC4336599" /note="Region: PAP_fibrillin; pfam04755" /db_xref="CDD:309752" polyA_site 1794 /gene="...
AA_position 47
XM_066309237.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable plastid-lipid-associated protein 11, chloroplastic (LOC4336599), transcript variant X3, mRNA. (2401 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 34..699 /gene="LOC4336599" /codon_start=1 /product="probable plastid-lipid-associated protein 11, chloroplastic" /protein_id="XP_015633744.1" /db_xref="GeneID:4336599" /translation="MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG" misc_feature 172..669 /gene="LOC4336599" /note="Region: PAP_fibrillin; pfam04755" /db_xref="CDD:309752" polyA_site 2401 /gene="...
AA_position 47
XM_015778258.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable plastid-lipid-associated protein 11, chloroplastic (LOC4336599), transcript variant X2, mRNA. (1791 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 34..699 /gene="LOC4336599" /codon_start=1 /product="probable plastid-lipid-associated protein 11, chloroplastic" /protein_id="XP_015633743.1" /db_xref="GeneID:4336599" /translation="MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG" misc_feature 172..669 /gene="LOC4336599" /note="Region: PAP_fibrillin; pfam04755" /db_xref="CDD:309752" polyA_site 1791 /gene="...
AA_position 47
XM_015778257.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable plastid-lipid-associated protein 11, chloroplastic (LOC4336599), transcript variant X1, mRNA. (2398 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 34..699 /gene="LOC4336599" /codon_start=1 /product="probable plastid-lipid-associated protein 11, chloroplastic" /protein_id="XP_015633742.1" /db_xref="GeneID:4336599" /translation="MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG" misc_feature 172..669 /gene="LOC4336599" /note="Region: PAP_fibrillin; pfam04755" /db_xref="CDD:309752" polyA_site 2398 /gene="...
AA_position 47
XM_015778256.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group peroxygenase (LOC4332103), transcript variant X2, mRNA. (936 bp)
gene="LOC4332103" /codon_start=1 /product="peroxygenase isoform X2" /protein_id="XP_066165132.1" /db_xref="GeneID:4332103" /translation="MATLLLIACLPTRRPHLSLRQRSYKLAPRITMAPPSSDPSLETVAPHAAVTGERKLNPNLQEQLPKPWLRAIGCGYPVSIAGAILINLVLSYPTQPGWMPSPLFSIHIKNIHKGKHGSDSEAYDTEGRFDPSKFDAIFSKYGRTHPNALTKDELNSMIKANRNMYDFIGWITSAGEWMLLYSVAKDKEGLLQRETVRGAFDGSLFERLQDSKKSA" misc_feature 304..729 /gene="LOC4332103" /note="Caleosin related protein; Region: Caleosin; pfam05042" /db_xref="CDD:428275" polyA_site 936 /gene="LOC4332103" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 157
XM_066309035.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4328003), mRNA. (672 bp)
using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:4328003" CDS 1..672 /gene="LOC4328003" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066163263.1" /db_xref="GeneID:4328003" /translation="MEKAAANQAGKVLKKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKKREEQQRLDEEGAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGADIYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFIAAQAVSSLQIGGDSSDITSPSQGATVVNRMLGATNRLNLYREI" ORIGIN //...
AA_position 22
XM_066307166.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group endoglucanase 17-like (LOC4340679), mRNA. (2025 bp)
id="NP_001408457.1" /db_xref="GeneID:4340679" /translation="MAAAGGAVLLLVLATATSVTGQHDYSDALHKSILFFEGQRSGRLPPDQRLRWRRDSALNDGATAGVDLTGGYYDAGDNVKFGFPMAFTATLMSWGLIDFGRSFGAHAAEAREAVRWATDYLMKATATPNTVYVQVGDAFRDHSCWERPEDMDTPRTVYKVDPSHPGSDVAAETAAALAAASIVFRDADPDYSNRLLDRAIQVFEFADKYRGPYSSSLHAAVCPCYCDYSGYKDELLWGAAWLHKASRRREYRDYIKRNEVVLGASEAINEFGWDNKHAGINVLISKEVLMGKDEYFQSFRVNADNFICTLLPGISNHPQIQYSPGGLLFKVGNSNMQHVTSLSFLLLAYSNYLSHANVRVPCGTSSASPVQLRRVAKRQVDYILGDNPLRMSYMVGYGSRYPLRIHHRGSSLPSVAAHPAQIGCKAGATYYASAAPNPNLLVGAVVGGPSNTSDAFPDARAVFQQSEPTTYINAPLLGLLAYFSAHPNLAQSDLLYD" misc_feature 60..1529 /gene="...
AA_position 232
Synonym: GLU13; OsGLU13; OsJ_020012
NM_001421528.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable complex I intermediate-associated protein 30 (LOC4324734), transcript variant X2, mRNA. (1126 bp)
COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 194..883 /gene="LOC4324734" /codon_start=1 /product="probable complex I intermediate-associated protein 30" /protein_id="XP_015622935.1" /db_xref="GeneID:4324734" /translation="MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTIAMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKIPLDSYLPTWRGNVIEAKMEMNPARVVGMSLSVNAEGGVPGAKTGPGDFRLEVDWIKALRTL" misc_feature 296..853 /gene="LOC4324734" /note="Complex I intermediate-associated protein 30 (CIA30); Region:...
AA_position 40
XM_015767449.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group probable complex I intermediate-associated protein 30 (LOC4324734), transcript variant X1, mRNA. (1112 bp)
COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 180..869 /gene="LOC4324734" /codon_start=1 /product="probable complex I intermediate-associated protein 30" /protein_id="XP_015622930.1" /db_xref="GeneID:4324734" /translation="MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTIAMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKIPLDSYLPTWRGNVIEAKMEMNPARVVGMSLSVNAEGGVPGAKTGPGDFRLEVDWIKALRTL" misc_feature 282..839 /gene="LOC4324734" /note="Complex I intermediate-associated protein 30 (CIA30); Region:...
AA_position 40
XM_015767444.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4341082), transcript variant X5, mRNA. (1377 bp)
gene="LOC4341082" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 339..1043 /gene="LOC4341082" /codon_start=1 /product="uncharacterized protein isoform X2" /protein_id="XP_066167629.1" /db_xref="GeneID:4341082" /translation="MEISGPGGGSNHTHLTERGEILEDAHDKKDELRAEDLELKLNEPFLNFMRLRLIPQWGQGFTSECQLKTAQDQLEWHSQIKPTRLPVLALHIGNKKFARTNECDIFVKFFYHKKSVIFQMSKDKLCRKVDIPFDDITSFCFVFGQQSDILTIEVKSSLIPLSAAKPLPGKFLDWKVDYSKDDEYYFPESKSLWVEAEKGSLEKTYAKLKYTNPHLTCLFTDAGEQGETSARHAT" polyA_site 1377 /gene="LOC4341082" /experiment="COORDINATES: polyA evidence [ECO:0006239]"...
AA_position 29
XM_066311532.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/en/os/aa%3aKDEL
lang : en | div : | spe : os | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.202 | 0.202 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.377 | 0.175 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.383 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]