2024-11-23 11:26:05, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_066311757 666 bp mRNA linear PLN 10-JUL-2024 DEFINITION PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC136357034), mRNA. ACCESSION XM_066311757 VERSION XM_066311757.1 DBLINK BioProject: PRJNA1123306 KEYWORDS RefSeq; includes ab initio. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089040) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_034140825.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/21/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..666 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="6" gene 1..666 /gene="LOC136357034" /note="uncharacterized LOC136357034; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:136357034" CDS 1..666 /gene="LOC136357034" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_066167854.1" /db_xref="GeneID:136357034" /translation="
MNRAEGQPITWAEFTEAFKKTHIPAGVVALKKREFRALKQKGRTVTEYLYEFNRLARYAPEDVRTDEERQEKFLEGLKDELSVMLISHDYEDFQELVDKAIRLEDKKNRMDNRQEQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNCYEPGHFVKECPKPKRQQPQGQVNNIVLTGANAVPVASQGIQLSHQFQSSSSFL"
misc_feature <7..237 /gene="LOC136357034" /note="Retrotransposon gag protein; Region: Retrotrans_gag; pfam03732" /db_xref="CDD:367628" misc_feature 397..>537 /gene="LOC136357034" /note="Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: AIR1; COG5082" /db_xref="CDD:227414" misc_feature 487..540 /gene="LOC136357034" /note="Zinc knuckle; Region: zf-CCHC; pfam00098" /db_xref="CDD:395050" ORIGIN
atgaatagagcagaaggacaaccaatcacttgggcggagttcactgaggcattcaagaagacacacatacctgcaggtgttgttgctttgaagaagcgtgagttccgggcacttaagcaaaagggtcgtaccgtgacggaatatctttatgagttcaatcgtctagctcgctatgctccagaagatgtgcgtactgacgaggaaaggcaggagaagtttttggaaggcttaaaggatgagctgtcagttatgttgatctctcatgactatgaggattttcaggagttggttgataaagcaattcgactggaagacaagaagaacaggatggacaatcgtcaagaacagtcacaacagttgggcatcagtggtgagatcaactcagagactaatgcaagcaatgaagacaatgatgagcaagctactcaatcagtgtcatttcagcaggatcagtctcaagaagataacagtaatggaagggagcatcgggtgtgtttcaattgttatgagccaggtcacttcgtaaaagagtgtccgaagccgaagcgtcaacagccacaaggccaagtcaacaacattgtcctcacaggagcaaatgcagtgccggttgcgtctcaagggatacagctcagccatcagttccaaagcagcagtagctttctttaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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