2024-11-23 16:06:48, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_066308238 3519 bp mRNA linear PLN 10-JUL-2024 DEFINITION PREDICTED: Oryza sativa Japonica Group protein argonaute 12 (LOC107275269), mRNA. ACCESSION XM_066308238 VERSION XM_066308238.1 DBLINK BioProject: PRJNA1123306 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089037) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_034140825.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/21/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3519 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" gene 1..3519 /gene="LOC107275269" /note="protein argonaute 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 39 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107275269" CDS 46..3177 /gene="LOC107275269" /codon_start=1 /product="protein argonaute 12" /protein_id="XP_066164335.1" /db_xref="GeneID:107275269" /translation="
MSSRGGGGGGRRGGRGGGGGREGGGGGGGGGGRGGQGRGDLGVVGERQGGGRGAGERGGRHDAPRGRGGVAVGAGAGRQQQQPFHAPAPPSGGGGRGGVQVQPNAAARRPVGGGRGGVGVPAPAPAVAVGALCGEMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAPPPATLPPSSSKAVTFPARPDVGTIGRRCRVRANHFLVQVADKDIYHYDVVITPESTYRERNRSIINKLVALHKQFLDGRLPVYDGRKSIYTAGPLPFKTKDFVVKHINPLRGNQREEEYKVTIKQASKTDLYSLKQFLVGRQRELPQDTIQALDIALRECPTYRYVSISRSFFSQSFGHGGEIGSGTECWRGYYQSLRPTQMGLSLNIDISATAFYKAQPVMDFAVQYLNIRDVSRRLSDQDRIKLKKALKGVQIVATHWKEKSIRYKITGIPSAPMNELMFDLDGNRISVVQYFKKQYNYSLKHVNWPCLQAGSDSRPKYLPMEVCSILEGQRYSKKLNEHQVTNILRMTCERPAQRESSIIEIVNTNSYGNDDCAKEFGIKVANQLAVVDARVLPTPRLKYHDSGREKVCNPSVGQWNMINKRMVNGGCINHWTCLSFASRMHVNDIRMFCEDLVGMCNNIGMQMNTRPCVDIIQGQQRNIEGAIRNIHRQSSEKLDQQDLTGQQLQLLIVILTEISGSYGRIKRICETEVGVITQCCAPKSLQKGGKQYLENLALKMNVKVGGRNTVLEDALHKKIPILTDRPTIVFGADVTHPSPGEDASPSIAAVVASMDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSRIIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDMMDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDEHSDQGSSSSVTTRTDRSTKPLPEIKENVKRFMFYC"
misc_feature 628..3174 /gene="LOC107275269" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" polyA_site 3519 /gene="LOC107275269" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ccgcttcgcctttaccccccccccccctcctcctcctcaatcatcatgtcttcgcgcggcggcggcggcggaggccgccgcggtgggcgaggcggcggtggtgggcgggaaggaggcggaggtggaggtggaggtggcgggaggggtggccagggtaggggcgatctcggcgtcgtcggcgagcggcaaggcggtggtcgaggggcgggtgagcgcggaggccgtcacgacgcgccgcgcggccgtggcggcgtcgctgtgggcgccggggctgggcggcagcagcagcagccattccacgccccggccccgccatctggcggcggcggacgaggcggcgtgcaggtgcagcccaatgcggcggcgcgtcgacccgtaggcggcgggcgcggcggcgtcggagtgccggcgcctgcgccggcggttgcggtgggggctctgtgcggcgagatgaaggggaagatggttgtgtcgggtggagcgccgccagcaggccagggttcgtcgttggcggcggcgcagggcacggacaatgtcaagagagagccatctcaggtcgccgcaccggcgcccgcgcccccgcccgcgacgctgccgccgtcgtcgagcaaggcggtgaccttcccggcgcgtccggacgtcggcacgatcgggaggcggtgccgcgtccgcgccaaccatttcctggtgcaagtcgcggacaaggacatctaccactacgacgtggtgatcactccagaatcaacttatcgtgagagaaatagatcaataatcaacaaacttgttgcgttgcacaaacaattcttggatggtaggttacctgtctatgatggaagaaagagcatatatactgcaggtccactacctttcaaaaccaaagactttgttgtcaagcacattaatcctttgaggggtaaccaacgggaggaggaatacaaggtgaccataaagcaagcctccaaaacagatctgtacagccttaagcagtttttggttggaaggcagagggagttgccacaggacactattcaagctcttgacattgctcttagggaatgccctacctacaggtatgtatctatctcaaggtcatttttctcccaatcatttgggcatggtggcgagattggtagtggtacagagtgttggagggggtattaccaaagtctgcgccccacgcagatgggactgtcgctaaatatcgatatttctgcaacagcattttacaaggcccagccagtgatggactttgcagttcagtatttgaacatccgagatgtttcaaggcgcttgtctgatcaagatcgtattaaactgaaaaaggccctaaaaggagtccaaattgtggcaactcactggaaagagaaatccatacgttacaagatcactggaataccctcagctccaatgaatgaattgatgtttgatctagatggaaacaggatatcagtcgtccaatactttaagaaacagtacaattactccttaaaacatgttaattggccatgccttcaagctggcagtgatagcagaccaaaatatttgcctatggaggtctgcagtatacttgaaggacaacggtattcgaagaagctaaatgagcatcaagttacaaacattctaaggatgacatgtgaacgacccgcacaaagggagagcagtatcatagagattgttaatacgaactcttatggcaatgatgattgtgcaaaagaatttggcatcaaagtcgctaaccaacttgccgtggttgatgcccgtgtactgcctacccctaggcttaaatatcatgactctggaagagaaaaagtatgtaatccttccgttggacaatggaacatgattaacaagaggatggtaaatggaggatgtatcaaccattggacctgcctatcttttgcttctcggatgcatgtaaatgacattaggatgttttgtgaagacctggttggcatgtgcaataatattggcatgcaaatgaatacgagaccatgtgtggatatcatacaaggacagcaacgcaacatcgagggtgcaatcagaaatatccataggcaatcttcagaaaagcttgaccagcaagacctgacagggcagcaacttcagttattaattgtaatattgactgaaattagtggttcttatggaaggataaaacgaatttgtgaaacagaggttggtgtgataactcaatgctgtgcacccaagagtcttcagaaaggtgggaaacagtatcttgaaaatctggccctaaaaatgaatgttaaggtcggggggcgaaatacagtacttgaagatgcgttgcacaagaaaataccaattctgacagatcgtcctacgatagtgtttggagcggatgttacacatccatctcctggggaggatgcttctccatccattgcagcggttgttgcatccatggattggccagaagttacaaagtacaaatgcttggtatctacacaaagtcatagggaagaaatcatatctaatctttacacagaagtgaaagatccattgaagggaattattagaggtggaatgattagggagttgctcaggtctttctaccaagaaactggacagaaacctagccggattatattttatcgagatggtatcagcgagggacagtttagccaagtgttgctttatgaaatggatgcaattcgcaaggcatgtgctagtttgcaggagggctaccttcctccagttacatttgttgttgtccagaaaaggcatcacacccgcctatttccagaaaatcgtcgagatatgatggatagaagcggaaatatccttcctggaactgttgttgacacaatgatctgccatccgagtgagtttgacttttacctctgtagccattctggtatcaaggggacgagccgtccaacacattatcatgttcttttagatgaaaatgggttcaaggctgatacgctgcaaaccctaacctacaatcttagctacacctatgcccgatgcacccgagcagtctccatagttcctccagcatactatgcgcatctgggagccttccgagcacgctactacatggaggacgagcattctgatcagggctcttcttcctccgtaacgacgcgaacggatcgatcgacgaagccgcttcctgaaatcaaggagaatgttaagcggttcatgttctactgctgaaggggttaagtttgatcctgttgaatagaagctcatgttctacaactcaagtgttgggtcttttgcaagaactgtctgtaacttttgcgggtgttagatgtctctagtggttgtgcaagtgcgaaaaccccctccccaaacagtctgggatgatgggttttacttagcatattgtgtttagtaaaaactcgtatctgcactctactaggtaccttcctgtctgtctagtctggtagtctggagaaggaagttactgctatgtggtacttggctgtattttgctgaaactcctttgtgtttggctgaatttccgaagttatgtcaaggccaagttatgtgatc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]