LOCUS       XM_066305523           13452 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group uncharacterized protein
            (LOC136351219), transcript variant X2, mRNA.
ACCESSION   XM_066305523
VERSION     XM_066305523.1
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089045) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13452
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="11"
     gene            1..13452
                     /gene="LOC136351219"
                     /note="uncharacterized LOC136351219; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9 long
                     SRA reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:136351219"
     CDS             1..3168
                     /gene="LOC136351219"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_066161620.1"
                     /db_xref="GeneID:136351219"
                     /translation="

MARGSALLDGSVLPPSRIVSKRQAGLPRRFMPEPATGREIVMLGEGHPAPDYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHLTPNAVMTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPSVVGGCYFQPRGPVLNRYIPCVLRKKWDDWKSDWFYTPLADEARLRLPSQPPAQASSWRAPVDLGDGYDAVLDRLAGLRSQGLTGAMVYGDYLRRRIAPLQRRARGAWEYTGSEDYMRTHQGVRWDWAPEDFKIVVQRVLNLSSVEASLIPQGVLPLCSDPDRASILTIMQAIGASEERAPRGHEGAGGSRRGEQSTPRGGRASGPRDGGPGSSRPADARGKRKQGGSPPPSPPRGGGAARASSRRPEGATPTSQPEGERKKKWLRKMGETEPSRGNLISPPRWSFNRPPRSETPSRSSHHSKAGQPEVEDPAAAEARRRESDRREAADRLREAEEAAREAARARQAEETAWEEAARARQAEEAAREEAARARQDEAMATSEAARDEAAGASLGPSPLGDAQATTSGAAGDEAAGVSLGPTPSGDAQDQPGPEDIPESGTFIGGPSRAASSPRRLFPIPSVAPLSAEPLLQALAAANTTVLDGLSAQVEALQAERAELDAAWARVEEGRRSVEAMVEVGRKAHRRHVSELEARKKVLAEIAKEMEEERGAALIATAVMNEAQDTLRLQYGSWEAELGKKLDAAQGVLDAAAARERRAAETEVASRRREETLEARAMALEERACAVERDLADREAAVAIREATLAEHEAACAEEESALRLREDALTKRERALEGAEAASQRLAESLSLREAAQEEQARRNLEGARAERAVLNQRAAELEARAKELDARARSGGAAAGESDLAARLAAAEHTIADLQGALDSSAGEVEALRLAGEVGPGMLRDAVSHLDRAGRQVGLWGGRTVKYAANQGGLAQRLSEMAGTLQRLPEELERTIKLSSRDLAQGAVELVLASYQVRNPDFSPWTALDEFPPWTEDGARAQVRDAADHIVQSFEGSAPRLAFALNSDEEDDDGGVGGNGDEAGDPGASD"

     misc_feature    169..369
                     /gene="LOC136351219"
                     /note="Putative gypsy type transposon; Region:
                     Transposase_28; pfam04195"
                     /db_xref="CDD:461222"
     misc_feature    922..>1791
                     /gene="LOC136351219"
                     /note="transcriptional regulator ICP4; Provisional;
                     Region: PHA03307"
                     /db_xref="CDD:223039"
     misc_feature    <1828..>2955
                     /gene="LOC136351219"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     polyA_site      13452
                     /gene="LOC136351219"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atggcacggggctctgctctgcttgacggtagcgtgctgccgccttcccgcattgtgagcaagaggcaggccgggctgccgcgccgcttcatgccggaacctgccaccggccgggagatagtcatgctgggcgagggacacccggcgccagactacccggggcggtccgtcttcttcctcccttttgcaatggcagggctggttccgccattttcttctttcttcatggatgttctggagttttacgatctccagatggcgcacctcacccccaatgcggtaatgacattggccatcttcgcgcacttgtgcgagatgttcatcggagtgcgcccatcccttcggctgttccggtggttcttcaccgtccagtcggtgtcgccgccgtcggtggttggtggctgctacttccagccgcgggggccggtgctgaaccgctacatcccctgcgtcctccgcaagaagtgggatgactggaagagcgactggttctacacccccctcgcagacgaagcgcgcctccgacttccgagccagcccccggcgcaggcctccagctggcgggctccggttgatctgggagatggctatgacgccgtcctcgaccgcctggcgggcctgcgatcccaggggctcacaggggccatggtgtacggcgactaccttcgtcgtcggatcgcgccgctccagcgacgcgcccggggcgcttgggagtacaccgggtccgaagactacatgaggacccatcagggagtcagatgggactgggctcctgaggacttcaagatagtagtccaacgggtgctgaatctcagctccgtggaggcatccctcattccccaaggagtcctccccctctgtagcgatccagaccgcgcctccatcctgaccattatgcaggcgatcggggcgtcggaggagcgggctcctcgaggccacgagggcgcgggcgggagccgcaggggggaacaatctaccccgagagggggtcgtgcttctgggccccgcgacgggggcccggggagcagccgccctgccgacgcccgggggaagaggaagcagggaggatcccctcccccatctcctccccgagggggcggggcggcgcgtgccagcagcaggcgcccggagggagccacgccgacgtcgcagcccgagggggagcgaaagaagaagtggctccgcaagatgggggagacagaaccatctcggggaaacctcatttcccctccaaggtggtcgtttaaccgaccccctcgcagtgagaccccgtcgcgttcctcccaccattccaaggccggccagcccgaagtcgaggatccggcggccgcagaggcccggaggcgggaatctgaccggcgagaagccgcagatcgcctacgggaagccgaggaggccgctcgggaggccgcccgggctcgccaggctgaagaaaccgcttgggaggaggccgcccgagctcgccaggccgaggaagccgctcgggaggaggccgcccgggctcgccaggacgaggcgatggcgacttccgaggcagctcgcgacgaggccgcgggcgcgtcgcttgggccctctcccttgggcgacgctcaggcgacgacttccggggcagctggcgacgaggccgcgggcgtatcgcttgggcccaccccctcgggcgacgctcaggaccaaccaggtccggaggacatccccgagtccggcacgttcatcggtgggccgagccgcgcggcatcctctccgaggcggcttttccccataccttctgttgccccactgagcgcggagccccttctgcaggccttggccgccgccaacaccacggtgttggacgggttaagtgcccaggtggaggccctgcaagcagagcgggcggagctcgacgccgcgtgggcgcgtgtcgaagaggggcgacgctcggtggaggccatggtggaggtgggccgtaaggctcaccgccggcacgtctcggagcttgaagcccgtaagaaggtgctggcggagatcgccaaggagatggaggaggagcggggggctgccctcatcgccaccgccgtgatgaacgaggcgcaggacaccctccgccttcaatacgggagctgggaggcagagctagggaagaagctcgacgccgcccaaggggtccttgacgctgccgctgcccgagaacggcgggcagcggagaccgaggtggcatcccggcggcgcgaagaaacccttgaggcccgcgccatggcgctggaagagcgtgcctgcgccgtggagagggacctggcggaccgcgaggccgccgttgccatccgggaggcaacgctggcggagcacgaggccgcctgcgccgaagaagagtccgcactccgcctccgcgaggacgcgctcactaagcgggagcgagctctcgagggggccgaggccgcgtcgcaacggctggcggaaagcctgtccctccgcgaggcagcgcaggaggagcaggcgcgccgtaatctagaaggtgcccgcgccgagagggccgtactgaaccagcgggccgctgagctcgaggcgcgggcgaaggagctggacgcgagggcgcgcagcggcggggcggccgcgggcgaaagcgacttagccgcccgcctcgcagctgccgaacacaccatcgccgatctgcagggcgcgctagactcgtccgccggggaggtcgaggccctccgcttggcaggcgaggtagggcccggcatgcttcgggacgccgtctcccatctagatcgcgccggccggcaggtgggcctctggggcgggcggactgtgaagtacgccgccaaccaggggggcctcgcccagcgcctctcggagatggccggaactcttcaacgtctccccgaggagctcgagaggacgatcaagttatcctcgagggacctcgcccaaggagcggtggagcttgtactggcgagctaccaggtcaggaatcccgacttctctccatggacagcgctggacgagttccctccctggaccgaggacggcgcgcgcgcacaggtccgggacgctgccgaccacatcgtccagagcttcgagggttcggcccctcggcttgcgtttgccctcaactccgacgaggaggacgatgacggcggagtgggcggcaatggcgacgaggctggcgacccgggcgcgtcggattgagcccctaggcccctgccaatcttcagttttcttcttttcttttttctaaggccttcggtcctcttttttgtataaattaacttaatctgcaatcaaaaatgaagaaattttttgtgtcaatttcattttgctatgtgtatgagatgaggatgatatgtgacgtggtccttttgtgtcttagcttgattaagggctcgtgcccaggtcccagtcctcaaaaggcacgggtcggggctagtgcctggggagatccacgtgtctagactggccaggccgggaacgtggtgaccgagggttatgggtgacccgattgtgggtttttgccgattcccccccggagttcaccacgccccggggcacggctcggttctgggccccgtttggcgattttagccgacccgagcctccgagggcaggattgagcacgagtgacctatttcaagttaagattcttcaaaaggaaacaacagtacagatacagcctttaggagattgaaaatgcttttattgaaatacagatataagagaaataagagtatgcatatgtggtagcccccggccaaccctgcacgcccgaggggggtgcggggttggcccgagcccgaaacctgacacctgatcctccttaggggtagaagcgacgaaggtgttcgatgttccatgggttaggcagctctgtgccgtagcccgtggccagccgaacggagcctggccgggggacgccgatcactcgatacggaccctcccacattggtgagagcttgctcaatccagcacgcgtttggacgcggcgtaggacgaggtcgtcgacgcagagtgatcgggcccagacgtggcgctgatggtagcgccgcaggctctgttggtagcgcgcggctcggagggccgcgcgccgccttcgctcctctaagtaatcgaggtcatctctgcgaagctgatcttgatcagcctcgcagtacatggtggcccgaggggacctcagggtgagctcggatgggagaaccgcttccgcgccgtagacgaggaagaaaggcgtttccccggttgctcggcttggtgtggtttggtttgcccagagcaccgctggcaactcctcgatccacgaattgccgtgcttcttgaggatgttgaaggtcttggttttaagggctctgaggatttctgcattggcgcgctccacttggccattgcttctggggtgggcaggtgaggcgaagcagagcttgatgcccatgtcttcgcagtagtcaccgaaaagctcactagtgaattgggtgccgttatccgtaataatacggttaggcactccaaaccgggctgtgatgcccttaatgaatttaagtgcggagtgcttatcaatcttgatgaccggataagcctcgggccacttagtgaatttgtcgattgcgacatacaggtactcaaacccacccagggcccgcctaaacggtcccaggatatcgagcccccagacagcaaatggccatgaaagaggtatgttctgcagggcctgggccggctgattgattcgcttggcgtggaattgacacgctctacaccgccggaccagatccactgcatcattgagagcggtcggccaatagaaaacttgacgaaagcctttaccaaccaaggtgcgcgaggcggagtgggctccgcattcgccttcatggatatcgttgagaagctcaacgccttgttcccgaggaatgcacttcaggaggattccattagccgcgcgccgatagagggtcccttctaccagcacgtagcgtttggaaatgcgctggacgcgttcactcccttcgcgatcctcgggtagagtcttatct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