2024-09-29 10:28:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_026025509 2009 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), mRNA. ACCESSION XM_026025509 VERSION XM_026025509.1 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq; corrected model. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029260.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-236 AP014961.1 2174907-2175142 237-590 AP014961.1 2175634-2175987 591-651 AP014961.1 2176104-2176164 652-746 AP014961.1 2176274-2176368 747-859 AP014961.1 2176470-2176582 860-1133 AP014961.1 2176676-2176949 1134-1247 AP014961.1 2177321-2177434 1248-1312 AP014961.1 2177567-2177631 1313-1454 AP014961.1 2177723-2177864 1455-1574 AP014961.1 2177945-2178064 1575-1663 AP014961.1 2178551-2178639 1664-1745 AP014961.1 2178747-2178828 1746-1746 "N" 1-1 1747-1772 AP014961.1 2178829-2178854 1773-1773 "N" 1-1 1774-2009 AP014961.1 2178855-2179090 FEATURES Location/Qualifiers source 1..2009 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="5" gene 1..2009 /gene="LOC4337744" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns" /db_xref="GeneID:4337744" CDS 258..1805 /gene="LOC4337744" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons" /codon_start=1 /product="LOW QUALITY PROTEIN: aspartic proteinase" /protein_id="XP_025881294.1" /db_xref="GeneID:4337744" /translation="
MAKRHLLLVTTCLWALSCALLLHASSDGFLRVNLNKKRLDKEDLTAAKLAQQGNRLLKTGSSDSDPVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDASSGGELVFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSAXKSVCRSLFXITEISLYIS"
misc_feature 456..1739 /gene="LOC4337744" /note="Phytepsin, a plant homolog of mammalian lysosomal pepsins; Region: phytepsin; cd06098" /db_xref="CDD:133162" misc_feature order(474..476,483..491,495..497,726..731,777..779, 795..797,912..914,939..956,966..968) /gene="LOC4337744" /note="propeptide binding site [active]" /db_xref="CDD:133162" misc_feature order(540..551,1101..1112) /gene="LOC4337744" /note="catalytic motif [active]" /db_xref="CDD:133162" misc_feature order(540..542,1101..1103) /gene="LOC4337744" /note="catalytic residue [active]" /db_xref="CDD:133162" misc_feature 663..695 /gene="LOC4337744" /note="Active site flap [active]" /db_xref="CDD:133162" misc_feature 1185..1286 /gene="LOC4337744" /note="Saposin-like type B, region 2; Region: SapB_2; pfam03489" /db_xref="CDD:460945" misc_feature 1359..1472 /gene="LOC4337744" /note="Saposin-like type B, region 1; Region: SapB_1; pfam05184" /db_xref="CDD:461575" ORIGIN
gaggttgctgtatttatcgtctttgtcctcatctttctttcttgctttcctctaccttgactttggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgagaacgattgattactttgctggctgctcttagctactactacaactgttttgtcttaatcggttgattacatctcatatttcatcggtttagctcgctctgtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattcttcagtaaggataatgtgttggttggagaccttgtagtgaaaaaccagaagttcattgaggcaacacgcgaaacaagcgttacctttatcatcggaaagtttgatggaattcttggtcttggctaccctgaaatctctgttgggaaagctcctccgatttggcagagcatgcaggagcaggaactgcttgcagatgatgtcttctcgttttggctgaaccgagacccggatgcatcctctggtggtgagctcgtctttggtggcatggatccgaagcattataagggggatcacacctacgtccctgtttcccgcaaaggctactggcagtttaacatgggggatctccttattgatggccactcaactggcttctgtgcaaaaggctgtgctgctattgtcgactccggaacttccttgcttgctggtccaacagctatagttgctcaggtgaaccatgctattggggctgaaggaatcatcagcacggaatgcaaagaagtggttagcgagtatggagagatgatcctcaacttgctcatagcacagacagatccgcagaaagtatgcagccaggttggtctgtgtatgtttgacggtaaacgctcagtaagcaatgggattgaatctgttgtcgacaaagaaaacttgggttctgatgctatgtgttcagtttgtgagatggctgttgtgtggatagagaaccagctacgcgaaaataaaacgaaggagctgatattgaattatgctaatcagttatgtgagcgtctaccaagccccaatggagaatcaactgtcagctgccatcaaatctcgaagatgcctaatcttgcattcaccattgcaaacaagacatttattcttacaccagagcagtacatcgtgaaactggagcaaggagggcaaaccgtctgcatcagcgggttcatggcgttcgacatacctccaccacgcggtcctctttggattcttggagatgtcttcatgggtgcttatcatacggttttcgacttcggcaaagacaggatcgggttcgctaaatctgcantgaagagtgtatgtagatcactcttcnagatcacggagattagcctgtatatttcataagctgaaaccaaacatgtatggttttatgatatatagtagctagtacacggacaaacctctttggttgcttctttctgaagaaaaaagaagaacagacatggatgtatgatctacctgatgtgtataaattgaatgatgcagtctgagaaataatcctctgatcatattgtggattctgaaatatatccgagtttcttttttcaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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